Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Forward (+)

17000496 .. 17009156

Gene Structure 8661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00013820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCAAGTGGCTTTAGAGCGACGTTATTGCAAGACGAGTGCTAACTCAAGACTTCTTCGGTCAAGACGAGGAACTTTGAATTCAAGGTCCGGGGGCAATCCCTTACCAAGTAAGGCAAGAAGTCCTTTTCCGGAAGGCAGAGAAAAGAACCTTGTGACGAGGTTGGTGCTCTCCTCGTCCACATCGTTTGATCAAGAAGTCAGGTCAAGGGATGCCCCGACGACTGCACCCCACGATGATGGCACGCTTGCCCATTCAAAAGAGACAGGTGATGGTGGTTTGAAAGGGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.5

Weight (kDa)

10.53

Isoelectric Point (pI)

66.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	79, 84, 258, 283
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	2 cut(s)	233, 266
BcgI	CGANNNNNNTGC	4 cut(s)	9, 43, 148, 182
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	130
BseAI	TCCGGA	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	90, 131
BsmAI	GTCTC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	190
BspEI	TCCGGA	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	245, 249
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	245, 249
Cfr13I	GGNCC	1 cut(s)	87
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviJI	RGCY	1 cut(s)	11
CviKI_1	RGCY	1 cut(s)	11
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	79
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FbaI	TGATCA	1 cut(s)	190
FokI	GGATG	1 cut(s)	224
HapII	CCGG	2 cut(s)	90, 131
HpaII	CCGG	2 cut(s)	90, 131
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188III	TCNNGA	4 cut(s)	48, 63, 131, 194
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	2 cut(s)	24, 223
HpyAV	CCTTC	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	3 cut(s)	4, 30, 227
HpySE526I	ACGT	1 cut(s)	22
Kpn2I	TCCGGA	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	4 cut(s)	103, 144, 187, 252
LweI	GCATC	1 cut(s)	202
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	79
MnlI	CCTC	3 cut(s)	62, 153, 184
MroI	TCCGGA	1 cut(s)	130
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	2 cut(s)	90, 131
MspR9I	CCNGG	1 cut(s)	91
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	2 cut(s)	64, 182
PspPI	GGNCC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	6 cut(s)	25, 89, 153, 164, 206, 271
SfaNI	GCATC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	89
TaiI	ACGT	1 cut(s)	25
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	87
XapI	RAATTY	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.