Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000435.1

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Forward (+)

288179 .. 289717

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000435.1_g000066.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgtgcaaaaccacagccaagtccaaaactgtatcatctggcagcccatggtacggtgcagaccgtgtcaagtacttgggcctattctttggtgaggctccatcatacctcaccggagagtttctcagggactacggttgggatactattgggctatcagcggatcccgagaccttttccgaaaaccgtgagcttgaggtcatccattccagatgggcgatgcttggggccttgggctgtgttttccccgaactcctggcccgcaacggagtcaagtttggcgaagctgttgggttcaagactgcagcccagatattcagtgaggggttaagcggcgaaatcagggacctctcgaaaaatcaatcaatcccagcgattacaaagcctccccggagcaaaccttcaaccttgttgaaacccggtgaccgccagtcagtcctagtctcctcgcgagccaactgtcagcctcaccagatcaacccggcgaccgtacttccagtcccagtctcctcgcgagccgactgccagtactactaccaccgatacactcagcgaagcaaggcgcttgaagaagaaatcaggtcgcgggactaccccaacgactgcaccccgcgggacttaggtcttgcggaatatccagaagcttttgctgagctcaaggtaaaggagctcaagaatggaagattagctatgttttccatgttcgggtttttagggtttttcgtacaagccattgttaccggaaagggaccaattgagaacctggctgaccacttagctgaccctgttaacaacaatgcttggtcgtatgccaccaactttgttcccagaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

278

Amino Acids

30.87

Weight (kDa)

8.5

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	451, 514, 586, 613
AciI	CCGC	8 cut(s)	161, 262, 333, 427, 586, 611, 613, 629
AclWI	GGATC	2 cut(s)	158, 171
AfaI	GTAC	5 cut(s)	53, 74, 492, 530, 726
AfiI	CCNNNNNNNGG	2 cut(s)	53, 705
AgsI	TTSAA	4 cut(s)	298, 405, 415, 569
AhdI	GACNNNNNGTC	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	255, 762
AluBI	AGCT	7 cut(s)	193, 287, 644, 655, 670, 689, 779
AluI	AGCT	7 cut(s)	193, 287, 644, 655, 670, 689, 779
Alw21I	GWGCWC	2 cut(s)	657, 672
Alw26I	GTCTC	3 cut(s)	164, 448, 511
AlwI	GGATC	2 cut(s)	158, 171
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	3 cut(s)	79, 228, 258
ApeKI	GCWGC	2 cut(s)	42, 305
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	5 cut(s)	79, 228, 259, 346, 749
AsuC2I	CCSGG	3 cut(s)	391, 420, 482
AsuHPI	GGTGA	4 cut(s)	103, 104, 434, 461
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	346, 749
BamHI	GGATCC	1 cut(s)	163
BanII	GRGCYC	2 cut(s)	657, 672
Bbv12I	GWGCWC	2 cut(s)	657, 672
BbvI	GCAGC	2 cut(s)	54, 317
BccI	CCATC	2 cut(s)	109, 207
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BciT130I	CCWGG	2 cut(s)	257, 764
BciVI	GTATCC	1 cut(s)	136
BcnI	CCSGG	3 cut(s)	391, 420, 482
BcoDI	GTCTC	3 cut(s)	164, 448, 511
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	566
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	3 cut(s)	43, 306, 334
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	3 cut(s)	44, 307, 335
BmcAI	AGTACT	2 cut(s)	74, 530
Bme1390I	CCNGG	5 cut(s)	257, 391, 420, 482, 764
Bme18I	GGWCC	2 cut(s)	346, 749
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	5 cut(s)	79, 228, 259, 346, 749
BmiI	GGNNCC	5 cut(s)	99, 165, 229, 347, 750
BmrFI	CCNGG	5 cut(s)	257, 391, 420, 482, 764
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	497
BoxI	GACNNNNGTC	1 cut(s)	621
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
Bpu1102I	GCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	3 cut(s)	215, 641, 656
BpuMI	CCSGG	3 cut(s)	391, 420, 482
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	4 cut(s)	47, 231, 389, 611
BsaWI	WCCGGW	2 cut(s)	113, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 705
Bse1I	ACTGG	4 cut(s)	430, 497, 503, 526
BseBI	CCWGG	2 cut(s)	257, 764
BseDI	CCNNGG	4 cut(s)	47, 231, 389, 611
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	53, 705
BseMII	CTCAG	3 cut(s)	139, 563, 642
BseNI	ACTGG	4 cut(s)	430, 497, 503, 526
BseRI	GAGGAG	2 cut(s)	436, 499
BseXI	GCAGC	2 cut(s)	54, 317
BseYI	CCCAGC	1 cut(s)	370
BsgI	GTGCAG	2 cut(s)	78, 589
Bsh1236I	CGCG	4 cut(s)	451, 514, 586, 613
Bsh1285I	CGRYCG	1 cut(s)	489
BshFI	GGCC	3 cut(s)	81, 230, 260
BsiEI	CGRYCG	1 cut(s)	489
BsiHKAI	GWGCWC	2 cut(s)	657, 672
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	5 cut(s)	114, 391, 420, 482, 741
BslFI	GGGAC	6 cut(s)	143, 359, 485, 602, 629, 762
BslI	CCNNNNNNNGG	2 cut(s)	53, 705
BsmAI	GTCTC	3 cut(s)	164, 448, 511
BsmFI	GGGAC	6 cut(s)	143, 359, 485, 602, 629, 762
BsnI	GGCC	3 cut(s)	81, 230, 260
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	657, 672
Bsp143I	GATC	2 cut(s)	163, 474
Bsp1720I	GCTNAGC	1 cut(s)	651
Bsp19I	CCATGG	1 cut(s)	47
Bsp68I	TCGCGA	2 cut(s)	451, 514
BspACI	CCGC	8 cut(s)	161, 262, 333, 427, 586, 611, 613, 629
BspANI	GGCC	3 cut(s)	81, 230, 260
BspCNI	CTCAG	3 cut(s)	138, 562, 643
BspFNI	CGCG	4 cut(s)	451, 514, 586, 613
BspLI	GGNNCC	5 cut(s)	99, 165, 229, 347, 750
BspMAI	CTGCAG	1 cut(s)	307
BspPI	GGATC	2 cut(s)	158, 171
BspTNI	GGTCTC	1 cut(s)	164
BsrI	ACTGG	4 cut(s)	430, 497, 503, 526
BssECI	CCNNGG	4 cut(s)	47, 231, 389, 611
BssMI	GATC	2 cut(s)	163, 474
BssT1I	CCWWGG	2 cut(s)	47, 231
Bst2UI	CCWGG	2 cut(s)	257, 764
Bst4CI	ACNGT	7 cut(s)	31, 56, 65, 137, 188, 461, 490
BstC8I	GCNNGC	3 cut(s)	262, 453, 516
BstDEI	CTNAG	5 cut(s)	125, 549, 619, 651, 775
BstDSI	CCRYGG	2 cut(s)	47, 611
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	4 cut(s)	451, 514, 586, 613
BstH2I	RGCGCY	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	2 cut(s)	166, 477
BstMAI	GTCTC	3 cut(s)	164, 448, 511
BstMBI	GATC	2 cut(s)	163, 474
BstMCI	CGRYCG	1 cut(s)	489
BstNI	CCWGG	2 cut(s)	257, 764
BstPAI	GACNNNNGTC	1 cut(s)	621
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	5 cut(s)	255, 389, 418, 480, 762
BstSFI	CTRYAG	1 cut(s)	303
BstUI	CGCG	4 cut(s)	451, 514, 586, 613
BstV1I	GCAGC	2 cut(s)	54, 317
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	81, 230, 260
BtgI	CCRYGG	2 cut(s)	47, 611
BtgZI	GCGATG	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	325
BtuMI	TCGCGA	2 cut(s)	451, 514
Cac8I	GCNNGC	3 cut(s)	262, 453, 516
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	5 cut(s)	79, 228, 259, 346, 749
Cfr42I	CCGCGG	1 cut(s)	614
Csp6I	GTAC	5 cut(s)	52, 73, 491, 529, 725
CspCI	CAANNNNNGTGG	2 cut(s)	802, 837
CviAII	CATG	2 cut(s)	48, 700
CviQI	GTAC	5 cut(s)	52, 73, 491, 529, 725
DdeI	CTNAG	5 cut(s)	125, 549, 619, 651, 775
DpnI	GATC	2 cut(s)	165, 476
DpnII	GATC	2 cut(s)	163, 474
DriI	GACNNNNNGTC	1 cut(s)	430
Eam1105I	GACNNNNNGTC	1 cut(s)	430
Ecl136II	GAGCTC	2 cut(s)	655, 670
Eco130I	CCWWGG	2 cut(s)	47, 231
Eco24I	GRGCYC	2 cut(s)	657, 672
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	2 cut(s)	346, 749
Eco53kI	GAGCTC	2 cut(s)	655, 670
Eco88I	CYCGRG	1 cut(s)	167
Eco91I	GGTNACC	1 cut(s)	422
EcoICRI	GAGCTC	2 cut(s)	655, 670
EcoO109I	RGGNCCY	2 cut(s)	228, 346
EcoO65I	GGTNACC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	255, 762
EcoT14I	CCWWGG	2 cut(s)	47, 231
EcoT38I	GRGCYC	2 cut(s)	657, 672
ErhI	CCWWGG	2 cut(s)	47, 231
FaeI	CATG	2 cut(s)	51, 703
FaiI	YATR	5 cut(s)	49, 106, 692, 701, 810
FaqI	GGGAC	6 cut(s)	143, 359, 485, 602, 629, 762
FatI	CATG	2 cut(s)	47, 699
FauI	CCCGC	4 cut(s)	269, 579, 606, 618
Fnu4HI	GCNGC	3 cut(s)	43, 306, 334
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	2 cut(s)	657, 672
Fsp4HI	GCNGC	3 cut(s)	43, 306, 334
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	3 cut(s)	43, 306, 334
GsaI	CCCAGC	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	566
HaeIII	GGCC	3 cut(s)	81, 230, 260
HapII	CCGG	5 cut(s)	114, 391, 420, 482, 741
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	2 cut(s)	51, 703
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	1 cut(s)	642
HinfI	GANTC	1 cut(s)	270
HpaI	GTTAAC	1 cut(s)	790
HpaII	CCGG	5 cut(s)	114, 391, 420, 482, 741
HphI	GGTGA	4 cut(s)	103, 104, 434, 461
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	8 cut(s)	167, 210, 298, 352, 450, 513, 638, 673
Hpy8I	GTNNAC	1 cut(s)	790
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	7 cut(s)	31, 56, 65, 137, 188, 461, 490
HpyCH4V	TGCA	4 cut(s)	6, 59, 305, 606
HpyF3I	CTNAG	5 cut(s)	125, 549, 619, 651, 775
Hsp92II	CATG	2 cut(s)	51, 703
HspAI	GCGC	1 cut(s)	563
KspAI	GTTAAC	1 cut(s)	790
KspI	CCGCGG	1 cut(s)	614
Kzo9I	GATC	2 cut(s)	163, 474
LmnI	GCTCC	3 cut(s)	103, 393, 667
Lsp1109I	GCAGC	2 cut(s)	54, 317
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	422, 736
MalI	GATC	2 cut(s)	165, 476
MboI	GATC	2 cut(s)	163, 474
MboII	GAAGA	3 cut(s)	581, 584, 693
MfeI	CAATTG	1 cut(s)	753
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	657, 672
MluCI	AATT	1 cut(s)	753
MlyI	GAGTC	1 cut(s)	279
MnlI	CCTC	9 cut(s)	88, 119, 190, 316, 359, 396, 457, 477, 520
MseI	TTAA	2 cut(s)	329, 789
MspA1I	CMGCKG	2 cut(s)	161, 613
MspI	CCGG	5 cut(s)	114, 391, 420, 482, 741
MspR9I	CCNGG	5 cut(s)	257, 391, 420, 482, 764
MunI	CAATTG	1 cut(s)	753
MvaI	CCWGG	2 cut(s)	257, 764
MvnI	CGCG	4 cut(s)	451, 514, 586, 613
NciI	CCSGG	3 cut(s)	391, 420, 482
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	163, 474
NlaIII	CATG	2 cut(s)	51, 703
NlaIV	GGNNCC	5 cut(s)	99, 165, 229, 347, 750
NmuCI	GTSAC	1 cut(s)	422
NruI	TCGCGA	2 cut(s)	451, 514
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	44, 307, 335
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PpuMI	RGGWCCY	1 cut(s)	346
PshAI	GACNNNNGTC	1 cut(s)	621
Psp124BI	GAGCTC	2 cut(s)	657, 672
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	255, 762
PspEI	GGTNACC	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	2 cut(s)	255, 762
PspN4I	GGNNCC	5 cut(s)	99, 165, 229, 347, 750
PspPI	GGNCC	5 cut(s)	79, 228, 259, 346, 749
PspPPI	RGGWCCY	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	65
RruI	TCGCGA	2 cut(s)	451, 514
RsaI	GTAC	5 cut(s)	53, 74, 492, 530, 726
RsaNI	GTAC	5 cut(s)	52, 73, 491, 529, 725
SacI	GAGCTC	2 cut(s)	657, 672
SacII	CCGCGG	1 cut(s)	614
SaqAI	TTAA	2 cut(s)	329, 789
SatI	GCNGC	3 cut(s)	43, 306, 334
Sau3AI	GATC	2 cut(s)	163, 474
Sau96I	GGNCC	5 cut(s)	79, 228, 259, 346, 749
ScaI	AGTACT	2 cut(s)	74, 530
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	5 cut(s)	257, 391, 420, 482, 764
SduI	GDGCHC	2 cut(s)	657, 672
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	303
Sfr303I	CCGCGG	1 cut(s)	614
SgrBI	CCGCGG	1 cut(s)	614
SinI	GGWCC	2 cut(s)	346, 749
SmlI	CTYRAG	3 cut(s)	194, 656, 671
SmoI	CTYRAG	3 cut(s)	194, 656, 671
Sse9I	AATT	1 cut(s)	753
SsiI	CCGC	8 cut(s)	161, 262, 333, 427, 586, 611, 613, 629
SspMI	CTAG	1 cut(s)	440
SstI	GAGCTC	2 cut(s)	657, 672
StyD4I	CCNGG	5 cut(s)	255, 389, 418, 480, 762
StyI	CCWWGG	2 cut(s)	47, 231
TaaI	ACNGT	7 cut(s)	31, 56, 65, 137, 188, 461, 490
TaqI	TCGA	1 cut(s)	353
TasI	AATT	1 cut(s)	753
TatI	WGTACW	2 cut(s)	72, 528
TauI	GCSGC	1 cut(s)	336
Tru1I	TTAA	2 cut(s)	329, 789
Tru9I	TTAA	2 cut(s)	329, 789
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	42, 305
Tsp45I	GTSAC	1 cut(s)	422
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	346, 749
XspI	CTAG	1 cut(s)	440
ZrmI	AGTACT	2 cut(s)	74, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.