Rroxscaffold_6G00410760

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002038
Physical Location & Seq
Forward (+)
33167850 .. 33168416
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410760.1

Sequence Viewer

Length: 345 bp
ATGACGCAAGAGATCACACCACAAACCCTTATCCTTAAGGCAAGAAGTCCTTTTCCGAAAGGCATAGAAAAGAACCTGGTGACGAGGTTGGTGCTCTCCTCGTCCACGGTGTTTGATTCGAAGTCGATCAAGGGACACTCCGACGACCGCACCCTACGAGAGACAATGGCTATCAACAAAGTTTCCTTTCAACTTCTTTCACTCGTTTTACTACTTTTCTTTACCAAACCTTTTGTCCTTGAAGCCACATTGATCAACTCCCATGTTGTGAATTTGACTGCGGCTTGCATTAAGGAGGAGAATAAGGCCCTCCTTAAATTCAAACTAGGCCTTAAAGATCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

114

Amino Acids

12.74

Weight (kDa)

9.72

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 148, 281
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 2 cut(s) 271, 317
AflII CTTAAG 1 cut(s) 35
AgsI TTSAA 3 cut(s) 191, 242, 322
AjnI CCWGG 1 cut(s) 75
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 332
AoxI GGCC 2 cut(s) 306, 328
ApoI RAATTY 2 cut(s) 271, 317
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 96
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 1 cut(s) 77
BclI TGATCA 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 326
BfrI CTTAAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 77
Bpu14I TTCGAA 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 105
BseRI GAGGAG 2 cut(s) 88, 311
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 308, 330
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 96
BslFI GGGAC 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 147
BsnI GGCC 2 cut(s) 308, 330
Bsp119I TTCGAA 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 4 cut(s) 12, 126, 252, 337
BspACI CCGC 2 cut(s) 148, 281
BspANI GGCC 2 cut(s) 308, 330
BspPI GGATC 1 cut(s) 332
BspT104I TTCGAA 1 cut(s) 119
BspTI CTTAAG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 4 cut(s) 12, 126, 252, 337
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 109
BstAFI CTTAAG 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 286
BstDSI CCRYGG 1 cut(s) 105
BstKTI GATC 4 cut(s) 15, 129, 255, 340
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 4 cut(s) 12, 126, 252, 337
BstMCI CGRYCG 1 cut(s) 148
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 2 cut(s) 308, 330
BtgI CCRYGG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 307
CseI GACGC 1 cut(s) 13
CsiI ACCWGGT 1 cut(s) 75
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 1 cut(s) 263
CviJI RGCY 5 cut(s) 170, 245, 284, 308, 330
CviKI_1 RGCY 5 cut(s) 170, 245, 284, 308, 330
DpnI GATC 4 cut(s) 14, 128, 254, 339
DpnII GATC 4 cut(s) 12, 126, 252, 337
Eco147I AGGCCT 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 266
FaiI YATR 2 cut(s) 65, 264
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FaqI GGGAC 1 cut(s) 147
FatI CATG 1 cut(s) 262
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 282
HaeIII GGCC 2 cut(s) 308, 330
HgaI GACGC 1 cut(s) 13
Hin1II CATG 1 cut(s) 266
HinfI GANTC 1 cut(s) 116
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 57, 142
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 288
Hsp92II CATG 1 cut(s) 266
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 4 cut(s) 12, 126, 252, 337
LpnPI CCDG 2 cut(s) 62, 89
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 14, 128, 254, 339
MboI GATC 4 cut(s) 12, 126, 252, 337
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 2 cut(s) 271, 317
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 78, 109, 289, 320
MseI TTAA 4 cut(s) 36, 291, 315, 333
MspCI CTTAAG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
NdeII GATC 4 cut(s) 12, 126, 252, 337
NlaIII CATG 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 79
NspV TTCGAA 1 cut(s) 119
PceI AGGCCT 1 cut(s) 330
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspPI GGNCC 1 cut(s) 307
PsuI RGATCY 1 cut(s) 337
SaqAI TTAA 4 cut(s) 36, 291, 315, 333
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 4 cut(s) 12, 126, 252, 337
Sau96I GGNCC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 96
SetI ASST 3 cut(s) 78, 89, 232
SexAI ACCWGGT 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 2 cut(s) 271, 317
SseBI AGGCCT 1 cut(s) 330
SsiI CCGC 2 cut(s) 148, 281
SspMI CTAG 1 cut(s) 326
StuI AGGCCT 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 119, 125
TasI AATT 2 cut(s) 271, 317
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 4 cut(s) 36, 291, 315, 333
Tru9I TTAA 4 cut(s) 36, 291, 315, 333
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 330
Vha464I CTTAAG 1 cut(s) 35
XapI RAATTY 2 cut(s) 271, 317
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.