RLG00000011732

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
12250187 .. 12252742
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011732

Sequence Viewer

Length: 309 bp
ATGAACGTGGACGATTTTGCAGCCGCCGACGACCTTTGTAACTCACTGTGGAGGGTTGTGTTATCTCAACCACCAGATCAAGCAGAGAAACAGAAGGGGTGCTTTCTAGTTGAAATTGGAGAGCGCTTCGTTGAAATTGGAGAAGAGAGCGAGAAGATTGGCTTGCCGCCTCATCCAAACGACGTCATCGACGTCTTCACCGCCGGAGAAGAGCAAAGAGTAGCTGCGCTTCTGATATGGAATCATAGCAGATCTAGAGGGGTTGAGATGAAGTCGGGAATTTGTTTTGCGATGCTATTTGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.33

Weight (kDa)

4.56

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 186, 195
AciI CCGC 3 cut(s) 24, 167, 201
AcsI RAATTY 1 cut(s) 279
AcyI GRCGYC 2 cut(s) 183, 192
AfeI AGCGCT 1 cut(s) 125
AgsI TTSAA 2 cut(s) 113, 134
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Aor51HI AGCGCT 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 20, 224
ApoI RAATTY 1 cut(s) 279
AspLEI GCGC 2 cut(s) 126, 229
AsuHPI GGTGA 1 cut(s) 190
BarI GAAGNNNNNNTAC 2 cut(s) 213, 245
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 32, 211
BfaI CTAG 2 cut(s) 107, 255
BfoI RGCGCY 1 cut(s) 127
BglII AGATCT 1 cut(s) 251
BisI GCNGC 4 cut(s) 21, 24, 167, 225
BlsI GCNGC 4 cut(s) 22, 25, 168, 226
BmsI GCATC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 187
BsaHI GRCGYC 2 cut(s) 183, 192
BseGI GGATG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 32, 211
BsiSI CCGG 1 cut(s) 204
Bsp143I GATC 2 cut(s) 76, 251
BspACI CCGC 3 cut(s) 24, 167, 201
BspQI GCTCTTC 1 cut(s) 204
BssMI GATC 2 cut(s) 76, 251
BssNI GRCGYC 2 cut(s) 183, 192
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 2 cut(s) 138, 204
BstACI GRCGYC 2 cut(s) 183, 192
BstC8I GCNNGC 1 cut(s) 164
BstF5I GGATG 1 cut(s) 172
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 2 cut(s) 126, 229
BstKTI GATC 2 cut(s) 79, 254
BstMBI GATC 2 cut(s) 76, 251
BstV1I GCAGC 2 cut(s) 32, 211
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 251
BstYI RGATCY 1 cut(s) 251
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 164
CfoI GCGC 2 cut(s) 126, 229
CviJI RGCY 3 cut(s) 23, 162, 224
CviKI_1 RGCY 3 cut(s) 23, 162, 224
DpnI GATC 2 cut(s) 78, 253
DpnII GATC 2 cut(s) 76, 251
Eam1104I CTCTTC 2 cut(s) 138, 204
EarI CTCTTC 2 cut(s) 138, 204
Eco47III AGCGCT 1 cut(s) 125
FaiI YATR 2 cut(s) 238, 246
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 146, 178
Fnu4HI GCNGC 4 cut(s) 21, 24, 167, 225
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 4 cut(s) 21, 24, 167, 225
FspBI CTAG 2 cut(s) 107, 255
GlaI GCGC 2 cut(s) 125, 228
GluI GCNGC 4 cut(s) 21, 24, 167, 225
HaeII RGCGCY 1 cut(s) 127
HapII CCGG 1 cut(s) 204
HhaI GCGC 2 cut(s) 126, 229
Hin1I GRCGYC 2 cut(s) 183, 192
Hin6I GCGC 2 cut(s) 124, 227
HinP1I GCGC 2 cut(s) 124, 227
HinfI GANTC 1 cut(s) 241
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 255, 276
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 3 cut(s) 32, 185, 194
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 3 cut(s) 6, 183, 192
HpyCH4V TGCA 1 cut(s) 20
HpySE526I ACGT 3 cut(s) 6, 183, 192
Hsp92I GRCGYC 2 cut(s) 183, 192
HspAI GCGC 2 cut(s) 124, 227
Kzo9I GATC 2 cut(s) 76, 251
LguI GCTCTTC 1 cut(s) 204
LpnPI CCDG 2 cut(s) 87, 217
Lsp1109I GCAGC 2 cut(s) 32, 211
LweI GCATC 1 cut(s) 282
MaeI CTAG 2 cut(s) 107, 255
MaeII ACGT 3 cut(s) 6, 183, 192
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 78, 253
MboI GATC 2 cut(s) 76, 251
MboII GAAGA 4 cut(s) 155, 166, 187, 221
MflI RGATCY 1 cut(s) 251
MluCI AATT 4 cut(s) 114, 135, 279, 304
MnlI CCTC 3 cut(s) 45, 180, 251
MspI CCGG 1 cut(s) 204
NdeII GATC 2 cut(s) 76, 251
PciSI GCTCTTC 1 cut(s) 204
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 189
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 4 cut(s) 22, 25, 168, 226
PsuI RGATCY 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 204
SatI GCNGC 4 cut(s) 21, 24, 167, 225
Sau3AI GATC 2 cut(s) 76, 251
SetI ASST 5 cut(s) 9, 36, 186, 195, 226
SfaNI GCATC 1 cut(s) 282
SgeI CNNG 9 cut(s) 19, 86, 92, 119, 163, 175, 216, 267, 288
Sse9I AATT 4 cut(s) 114, 135, 279, 304
SsiI CCGC 3 cut(s) 24, 167, 201
SspMI CTAG 2 cut(s) 107, 255
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 3 cut(s) 9, 186, 195
TaqI TCGA 1 cut(s) 189
TasI AATT 4 cut(s) 114, 135, 279, 304
TauI GCSGC 2 cut(s) 26, 169
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 1 cut(s) 51
TseI GCWGC 2 cut(s) 20, 224
TspDTI ATGAA 2 cut(s) 17, 284
TspRI CASTG 1 cut(s) 51
XapI RAATTY 1 cut(s) 279
XbaI TCTAGA 1 cut(s) 254
XspI CTAG 2 cut(s) 107, 255
ZraI GACGTC 2 cut(s) 184, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.