Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Reverse (-)

29736770 .. 29738080

Gene Structure 1311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013316

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTCGCCGATGCCTGGGCTGCCTCGCCTCACCGTGCATCTTCATCATCGTCGCGATTCTTCTCTCACCTCTCCGATCACGATCATGAACCAGAAATCAGACAACCGCCGACAATTTCCAGATCTTGGTCGTCGGGATCCGAGGCCTAGACCAAGACGTGAAGGCAGTGGTGCTCGAATTGGCGCAGTAGAGAAACATAAGGGGAGCTTTCTCGTTGAAATTAGAGAGGGCTTCATTGAAATTAGAGAGGAGAGAGAGAAGATTGGCTTGCCGCCTCGTCCAAACGGCGTCACCGACGTCTTCACTACCGGAGAAGAGCAAAGAGCTGGTGAGTTGTGTGAAAGCCACTACAGTTCTGCAAGACAGGCACTTCAAGAGTCAATCAAGGATTTGGAAAATGGTAACTTCGACTCTGCAGGACGCAAGGCAAGTGATGCTACACAACAAGTTAAGATCTGTGGAAGTGAATTTGCGAGGTTCAGTGTCACTTATCCTCTAAACTTGGCAAAGAGGGAAGCGTTGCTAGTGCAACTGCGGGATATTGCTTCAAATATTATTTCTAGTCTTTTGGTTTTATTTTGGAACTTGTGTAGATACAAGGTTTACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

23.0

Weight (kDa)

9.57

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	300
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccII	CGCG	1 cut(s)	54
AciI	CCGC	3 cut(s)	106, 272, 535
AclWI	GGATC	2 cut(s)	131, 144
AcsI	RAATTY	1 cut(s)	467
AcyI	GRCGYC	2 cut(s)	288, 297
AfiI	CCNNNNNNNGG	2 cut(s)	14, 125
AgsI	TTSAA	4 cut(s)	218, 239, 374, 549
AjiI	CACGTC	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	2 cut(s)	207, 326
AluI	AGCT	2 cut(s)	207, 326
Alw21I	GWGCWC	1 cut(s)	175
AlwI	GGATC	2 cut(s)	131, 144
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	4 cut(s)	22, 58, 283, 341
BamHI	GGATCC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	6
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	15
BfaI	CTAG	3 cut(s)	147, 524, 561
BfmI	CTRYAG	2 cut(s)	349, 414
BglII	AGATCT	2 cut(s)	121, 453
BisI	GCNGC	2 cut(s)	20, 272
BlsI	GCNGC	2 cut(s)	21, 273
Bme1390I	CCNGG	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	2 cut(s)	46, 424
BpiI	GAAGAC	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	288, 297
BsaJI	CCNNGG	2 cut(s)	14, 140
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 125
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	14, 140
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	14, 125
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	6
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	14, 125
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	75, 81, 121, 136, 453
Bsp68I	TCGCGA	1 cut(s)	54
BspACI	CCGC	3 cut(s)	106, 272, 535
BspANI	GGCC	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	418
BspPI	GGATC	2 cut(s)	131, 144
BspQI	GCTCTTC	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	14, 140
BssMI	GATC	5 cut(s)	75, 81, 121, 136, 453
BssNI	GRCGYC	2 cut(s)	288, 297
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	34, 353
Bst6I	CTCTTC	1 cut(s)	309
BstACI	GRCGYC	2 cut(s)	288, 297
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	5 cut(s)	78, 84, 124, 139, 456
BstMBI	GATC	5 cut(s)	75, 81, 121, 136, 453
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 365, 434
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	2 cut(s)	349, 414
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	3 cut(s)	121, 136, 453
BstYI	RGATCY	3 cut(s)	121, 136, 453
BsuRI	GGCC	1 cut(s)	145
BtrI	CACGTC	1 cut(s)	158
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	172, 487
BtuMI	TCGCGA	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	269
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	1 cut(s)	185
CseI	GACGC	2 cut(s)	277, 429
CviAII	CATG	2 cut(s)	85, 609
CviJI	RGCY	7 cut(s)	19, 145, 207, 231, 267, 326, 345
CviKI_1	RGCY	7 cut(s)	19, 145, 207, 231, 267, 326, 345
DpnI	GATC	5 cut(s)	77, 83, 123, 138, 455
DpnII	GATC	5 cut(s)	75, 81, 121, 136, 453
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	88, 612
FaiI	YATR	3 cut(s)	86, 198, 610
FalI	AAGNNNNNCTT	4 cut(s)	191, 223, 251, 283
FatI	CATG	2 cut(s)	84, 608
FauI	CCCGC	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	20, 272
Fsp4HI	GCNGC	2 cut(s)	20, 272
FspBI	CTAG	3 cut(s)	147, 524, 561
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	20, 272
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	2 cut(s)	277, 429
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	2 cut(s)	288, 297
Hin1II	CATG	2 cut(s)	88, 612
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	3 cut(s)	56, 377, 410
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	4 cut(s)	22, 58, 283, 341
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	3 cut(s)	75, 100, 141
Hpy188III	TCNNGA	6 cut(s)	53, 79, 85, 119, 134, 374
Hpy8I	GTNNAC	1 cut(s)	604
Hpy99I	CGWCG	3 cut(s)	54, 135, 299
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	2 cut(s)	34, 353
HpyCH4IV	ACGT	2 cut(s)	157, 297
HpyCH4V	TGCA	4 cut(s)	37, 359, 416, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 365, 434
HpySE526I	ACGT	2 cut(s)	157, 297
Hsp92I	GRCGYC	2 cut(s)	288, 297
Hsp92II	CATG	2 cut(s)	88, 612
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	5 cut(s)	75, 81, 121, 136, 453
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	7 cut(s)	27, 104, 132, 312, 322, 350, 402
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	2 cut(s)	46, 424
MaeI	CTAG	3 cut(s)	147, 524, 561
MaeII	ACGT	2 cut(s)	157, 297
MaeIII	GTNAC	3 cut(s)	289, 401, 484
MalI	GATC	5 cut(s)	77, 83, 123, 138, 455
MboI	GATC	5 cut(s)	75, 81, 121, 136, 453
MboII	GAAGA	5 cut(s)	32, 51, 271, 292, 326
MflI	RGATCY	3 cut(s)	121, 136, 453
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	5 cut(s)	113, 177, 219, 240, 467
MlyI	GAGTC	2 cut(s)	386, 404
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	19, 365, 434
NdeII	GATC	5 cut(s)	75, 81, 121, 136, 453
NlaIII	CATG	2 cut(s)	88, 612
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	2 cut(s)	289, 484
NruI	TCGCGA	1 cut(s)	54
PagI	TCATGA	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	21, 273
PleI	GAGTC	2 cut(s)	385, 404
PpsI	GAGTC	2 cut(s)	385, 404
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	3 cut(s)	121, 136, 453
RruI	TCGCGA	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	2 cut(s)	20, 272
Sau3AI	GATC	5 cut(s)	75, 81, 121, 136, 453
SchI	GAGTC	2 cut(s)	386, 404
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	7 cut(s)	71, 160, 209, 300, 328, 479, 603
SfaNI	GCATC	2 cut(s)	46, 424
SfcI	CTRYAG	2 cut(s)	349, 414
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	5 cut(s)	113, 177, 219, 240, 467
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	3 cut(s)	106, 272, 535
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	3 cut(s)	147, 524, 561
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	34, 353
TaiI	ACGT	2 cut(s)	160, 300
TaqI	TCGA	2 cut(s)	175, 408
TasI	AATT	5 cut(s)	113, 177, 219, 240, 467
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	2 cut(s)	172, 487
TseFI	GTSAC	2 cut(s)	289, 484
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	2 cut(s)	289, 484
TspDTI	ATGAA	3 cut(s)	32, 101, 223
TspRI	CASTG	2 cut(s)	172, 487
Van91I	CCANNNNNTGG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	467
XspI	CTAG	3 cut(s)	147, 524, 561
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.