Rroxscaffold_2G00143180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002038
Physical Location & Seq
Forward (+)
81200247 .. 81200656
410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143180.1

Sequence Viewer

Length: 258 bp
ATGGACGTGGTACAATTCAGAAGCATGCAATCACGGTTAATTGTGATTATCCTCTCTCGATTGCATACCGCGGGCTACGAAGTTTCCGCGAAGGCAATTGAGATGTGCATACCCTACCGCATTCAAGAGGAGGATTATATCCAGGACTCCCAAAGTAGCCTATATATAGAGGCTAAAGACGATACGAAAAAGCCTCTCTCTCGGCAATCAATCCCGCCGATTACAAAGCCTCCCGGAGCAAACCCTCAACCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.69

Weight (kDa)

7.87

Isoelectric Point (pI)

64.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 71, 89
AciI CCGC 5 cut(s) 69, 71, 87, 118, 215
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 1 cut(s) 125
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 1 cut(s) 234
Bme1390I CCNGG 2 cut(s) 143, 234
BmgBI CACGTC 1 cut(s) 7
BmrFI CCNGG 2 cut(s) 143, 234
BpuMI CCSGG 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 143
Bsh1236I CGCG 2 cut(s) 71, 89
BsiSI CCGG 1 cut(s) 234
BsmI GAATGC 1 cut(s) 120
BspACI CCGC 5 cut(s) 69, 71, 87, 118, 215
BspFNI CGCG 2 cut(s) 71, 89
BssECI CCNNGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 26, 73
BstDSI CCRYGG 1 cut(s) 69
BstFNI CGCG 2 cut(s) 71, 89
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 141, 232
BstUI CGCG 2 cut(s) 71, 89
BtgI CCRYGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 7
Cac8I GCNNGC 2 cut(s) 26, 73
Cfr42I CCGCGG 1 cut(s) 72
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 25
CviJI RGCY 5 cut(s) 75, 159, 173, 193, 229
CviKI_1 RGCY 5 cut(s) 75, 159, 173, 193, 229
CviQI GTAC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 141
FaeI CATG 1 cut(s) 28
FaiI YATR 7 cut(s) 26, 66, 110, 138, 163, 165, 167
FatI CATG 1 cut(s) 24
FauI CCCGC 2 cut(s) 64, 222
HapII CCGG 1 cut(s) 234
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 234
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 2 cut(s) 57, 125
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 3 cut(s) 28, 64, 108
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 1 cut(s) 28
KspI CCGCGG 1 cut(s) 72
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 3 cut(s) 128, 155, 247
MaeII ACGT 1 cut(s) 6
MfeI CAATTG 1 cut(s) 96
MluCI AATT 3 cut(s) 14, 39, 96
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 7 cut(s) 62, 121, 124, 163, 204, 240, 255
MseI TTAA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 143, 234
MunI CAATTG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 2 cut(s) 71, 89
NciI CCSGG 1 cut(s) 234
NlaIII CATG 1 cut(s) 28
NmeAIII GCCGAG 1 cut(s) 181
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PctI GAATGC 1 cut(s) 120
PfoI TCCNGGA 2 cut(s) 141, 232
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SacII CCGCGG 1 cut(s) 72
SaqAI TTAA 1 cut(s) 38
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 143, 234
SetI ASST 2 cut(s) 9, 253
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SphI GCATGC 1 cut(s) 28
Sse9I AATT 3 cut(s) 14, 39, 96
SsiI CCGC 5 cut(s) 69, 71, 87, 118, 215
StyD4I CCNGG 2 cut(s) 141, 232
TaaI ACNGT 1 cut(s) 36
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 58
TasI AATT 3 cut(s) 14, 39, 96
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
XceI RCATGY 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.