Rroxscaffold_5G00357860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002038
Physical Location & Seq
Reverse (-)
37746157 .. 37753177
7021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357860.1

Sequence Viewer

Length: 354 bp
ATGATCACCATTGAGAGCTATGAGATAACAAGAGAGACTGTGAAAGAGTTCGAAGTTTGGAGAAGAAAGAGGGAGAAAGTCGGGTCACGGGACTACCCCAACGACCGCACCCCGCGGTGCGGCACGCCCGCGCAACTACTCACTCAAAAGAGACTTGTTTGCACACCAGCTGGTTTTGGAGCCAAACAACATTACCATCGATTCAAGACTACACAAATGATCGAGGACAAGCGACTTCAAGACTACGAGTATCCAAAAGCATTGTCAAGGATATGGCATCAAATAAAATTCCATGACCTACCATTTCGTCAAACAACCCTGGGGCTTTTCCGCATTGACCTATATGGCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

14.08

Weight (kDa)

9.73

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 115, 131
AciI CCGC 6 cut(s) 106, 113, 115, 120, 129, 331
AcsI RAATTY 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 2 cut(s) 205, 239
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 2 cut(s) 18, 170
AluI AGCT 2 cut(s) 18, 170
Alw26I GTCTC 2 cut(s) 29, 145
ApoI RAATTY 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 133
AsuII TTCGAA 1 cut(s) 51
BccI CCATC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 320
BciVI GTATCC 1 cut(s) 261
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 29, 145
BfuI GTATCC 1 cut(s) 261
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 1 cut(s) 286
Bpu14I TTCGAA 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 199
BsaJI CCNNGG 3 cut(s) 113, 318, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 199
BseDI CCNNGG 3 cut(s) 113, 318, 319
BseLI CCNNNNNNNGG 1 cut(s) 119
Bsh1236I CGCG 2 cut(s) 115, 131
Bsh1285I CGRYCG 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 29, 145
BsmFI GGGAC 1 cut(s) 104
Bsp119I TTCGAA 1 cut(s) 51
Bsp143I GATC 2 cut(s) 3, 219
BspACI CCGC 6 cut(s) 106, 113, 115, 120, 129, 331
BspDI ATCGAT 1 cut(s) 199
BspFNI CGCG 2 cut(s) 115, 131
BspLI GGNNCC 1 cut(s) 181
BspT104I TTCGAA 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 113, 318, 319
BssMI GATC 2 cut(s) 3, 219
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 40
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 125, 129
BstDSI CCRYGG 1 cut(s) 113
BstFNI CGCG 2 cut(s) 115, 131
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 2 cut(s) 6, 222
BstMAI GTCTC 2 cut(s) 29, 145
BstMBI GATC 2 cut(s) 3, 219
BstMCI CGRYCG 1 cut(s) 106
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 318
BstUI CGCG 2 cut(s) 115, 131
Bsu15I ATCGAT 1 cut(s) 199
BsuI GTATCC 1 cut(s) 261
BsuTUI ATCGAT 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 125, 129
CfoI GCGC 1 cut(s) 133
Cfr42I CCGCGG 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 199
CviAII CATG 1 cut(s) 293
CviJI RGCY 4 cut(s) 18, 170, 182, 325
CviKI_1 RGCY 4 cut(s) 18, 170, 182, 325
DpnI GATC 2 cut(s) 5, 221
DpnII GATC 2 cut(s) 3, 219
EcoRII CCWGG 1 cut(s) 318
FaeI CATG 1 cut(s) 296
FaiI YATR 6 cut(s) 21, 274, 294, 343, 345, 352
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 292
FauI CCCGC 2 cut(s) 120, 136
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
GlaI GCGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 296
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 205, 239
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 162
Hsp92II CATG 1 cut(s) 296
HspAI GCGC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 3
KspI CCGCGG 1 cut(s) 116
Kzo9I GATC 2 cut(s) 3, 219
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 4 cut(s) 156, 180, 305, 332
LweI GCATC 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 84
MalI GATC 2 cut(s) 5, 221
MboI GATC 2 cut(s) 3, 219
MboII GAAGA 1 cut(s) 75
MluCI AATT 1 cut(s) 287
MnlI CCTC 2 cut(s) 63, 217
MroXI GAANNNNTTC 1 cut(s) 47
MspA1I CMGCKG 2 cut(s) 115, 170
MspR9I CCNGG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 2 cut(s) 115, 131
NdeII GATC 2 cut(s) 3, 219
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 84
NspV TTCGAA 1 cut(s) 51
PasI CCCWGGG 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 170
SacII CCGCGG 1 cut(s) 116
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 3, 219
ScrFI CCNGG 1 cut(s) 320
SetI ASST 4 cut(s) 20, 172, 300, 342
SfaNI GCATC 1 cut(s) 286
Sfr303I CCGCGG 1 cut(s) 116
SfuI TTCGAA 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 116
Sse9I AATT 1 cut(s) 287
SsiI CCGC 6 cut(s) 106, 113, 115, 120, 129, 331
StyD4I CCNGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 3 cut(s) 51, 199, 222
TasI AATT 1 cut(s) 287
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 201
TseFI GTSAC 1 cut(s) 84
Tsp45I GTSAC 1 cut(s) 84
XapI RAATTY 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.