Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Reverse (-)

16667350 .. 16677051

Gene Structure 9702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGATCGGCCGGATGGATCGTGCTCGACGTACAAAGGTTGGTCCGAAAACGAAAGCCTCTCTTGAACGCAGTCATCAAGTGCAGTTTGGACATAATTTCCAAGCAAAAAAAGCGCAGCCATCAAACCCAGATATCCGTCTTCGTGGAAGGTTGAAGAGATACTTGGAAATGAGGCGTGCTGATGGAGGGATGACCTTGGACAAGCTTATGTGCTTTGCCTGCATTTCCGCAATTCGATGTTCAGTGATACACAGACTTGGAAGCTTAAGAGATTGTGCTCCAAGCCAAGTTACCTCCGCTCTTGTAACCCTTGGGACGTCTGGGATCCTTACAACGTTTAGGTATGGTGACTGCGATTGCTGGGTTGAGGCCACGACTCTGAAGTTCTTTAGAGAGCACAATGGCACAAAGACAACGCTTGTCGACGCGTTTCACCAACGAGCAACACTCGGGAGAAACCGCGACGCTCCCATCTTGTGCTGCTGGTCCACATCAAGCAAGCTTGTATACCACAACCTCTGGGTGGTATTAGGTTCAACTCATGCTGAAACTTATCACAAATTCCAGCAAATTAAGAAAAAACAAAAAAACAATCCACAAGAAGCAAAGAAGTCCTTTTTCGGAAGGCGAGAAAAGAGCCTCGTGAAGAGGTTGGTGCTCTCCTCGTCCACGTCGCTTGATTCAAGAAGTCGTGTCAATGGACTCCCCGACGACCGCACCCCACGGTGTTGGCACGCCTGCGCACAAGCTCAAAAGAGACAGCTTTGCAAGCCCACAGGTTTTGGAGCCAAACATTTTGGCACGCCAAGGTGGGACCACACTAGAGTCTTTTGTATTCACCATCATTGGGATGCCAGGGAAATATCTTTACCGAAGGAACTCCTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

33.86

Weight (kDa)

10.26

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	320
Acc16I	TGCGCA	1 cut(s)	742
AccBSI	CCGCTC	1 cut(s)	299
AccI	GTMKAC	2 cut(s)	423, 507
AccII	CGCG	2 cut(s)	428, 462
AciI	CCGC	4 cut(s)	228, 297, 460, 715
AclI	AACGTT	1 cut(s)	335
AclWI	GGATC	3 cut(s)	24, 319, 332
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	523, 847
AflII	CTTAAG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	4 cut(s)	65, 154, 537, 684
AjiI	CACGTC	1 cut(s)	672
AjnI	CCWGG	1 cut(s)	854
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	5 cut(s)	205, 264, 502, 749, 763
AluI	AGCT	5 cut(s)	205, 264, 502, 749, 763
Alw21I	GWGCWC	4 cut(s)	25, 280, 399, 660
Alw26I	GTCTC	1 cut(s)	751
AlwI	GGATC	3 cut(s)	24, 319, 332
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	7, 369
ApeKI	GCWGC	2 cut(s)	115, 480
ApoI	RAATTY	1 cut(s)	560
AspLEI	GCGC	2 cut(s)	115, 743
AspS9I	GGNCC	3 cut(s)	41, 486, 814
AsuHPI	GGTGA	3 cut(s)	359, 425, 830
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	3 cut(s)	41, 486, 814
BamHI	GGATCC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	4 cut(s)	25, 280, 399, 660
BbvI	GCAGC	2 cut(s)	127, 467
BccI	CCATC	5 cut(s)	7, 127, 176, 479, 849
BciT130I	CCWGG	1 cut(s)	856
BcoDI	GTCTC	1 cut(s)	751
BfaI	CTAG	1 cut(s)	822
BfrI	CTTAAG	1 cut(s)	265
BisI	GCNGC	2 cut(s)	116, 481
BlsI	GCNGC	2 cut(s)	117, 482
Bme1390I	CCNGG	1 cut(s)	856
Bme18I	GGWCC	3 cut(s)	41, 486, 814
BmeT110I	CYCGRG	1 cut(s)	449
BmgBI	CACGTC	1 cut(s)	672
BmgT120I	GGNCC	3 cut(s)	41, 486, 814
BmiI	GGNNCC	3 cut(s)	326, 787, 815
BmrFI	CCNGG	1 cut(s)	856
BmsI	GCATC	1 cut(s)	841
BpiI	GAAGAC	1 cut(s)	131
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	5 cut(s)	195, 310, 722, 806, 855
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 847
BseBI	CCWGG	1 cut(s)	856
BseDI	CCNNGG	5 cut(s)	195, 310, 722, 806, 855
BseGI	GGATG	3 cut(s)	18, 195, 856
BseLI	CCNNNNNNNGG	2 cut(s)	523, 847
BseRI	GAGGAG	1 cut(s)	652
BseX3I	CGGCCG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	127, 467
BseYI	CCCAGC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	2 cut(s)	428, 462
Bsh1285I	CGRYCG	2 cut(s)	10, 715
BshFI	GGCC	2 cut(s)	9, 371
BsiEI	CGRYCG	2 cut(s)	10, 715
BsiHKAI	GWGCWC	4 cut(s)	25, 280, 399, 660
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	2 cut(s)	328, 827
BslI	CCNNNNNNNGG	2 cut(s)	523, 847
BsmAI	GTCTC	1 cut(s)	751
BsmFI	GGGAC	2 cut(s)	328, 827
BsnI	GGCC	2 cut(s)	9, 371
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	4 cut(s)	25, 280, 399, 660
Bsp143I	GATC	3 cut(s)	3, 16, 324
BspACI	CCGC	4 cut(s)	228, 297, 460, 715
BspANI	GGCC	2 cut(s)	9, 371
BspFNI	CGCG	2 cut(s)	428, 462
BspLI	GGNNCC	3 cut(s)	326, 787, 815
BspPI	GGATC	3 cut(s)	24, 319, 332
BspTI	CTTAAG	1 cut(s)	265
BsrBI	CCGCTC	1 cut(s)	299
BssECI	CCNNGG	5 cut(s)	195, 310, 722, 806, 855
BssMI	GATC	3 cut(s)	3, 16, 324
BssNAI	GTATAC	1 cut(s)	508
BssNI	GRCGYC	1 cut(s)	317
BssSI	CACGAG	1 cut(s)	641
BssT1I	CCWWGG	3 cut(s)	195, 310, 806
Bst1107I	GTATAC	1 cut(s)	508
Bst2BI	CACGAG	1 cut(s)	641
Bst2UI	CCWGG	1 cut(s)	856
Bst4CI	ACNGT	1 cut(s)	726
Bst6I	CTCTTC	2 cut(s)	149, 641
BstACI	GRCGYC	1 cut(s)	317
BstAFI	CTTAAG	1 cut(s)	265
BstC8I	GCNNGC	7 cut(s)	177, 220, 500, 735, 739, 770, 803
BstDSI	CCRYGG	1 cut(s)	722
BstF5I	GGATG	3 cut(s)	18, 195, 856
BstFNI	CGCG	2 cut(s)	428, 462
BstHHI	GCGC	2 cut(s)	115, 743
BstKTI	GATC	3 cut(s)	6, 19, 327
BstMAI	GTCTC	1 cut(s)	751
BstMBI	GATC	3 cut(s)	3, 16, 324
BstMCI	CGRYCG	2 cut(s)	10, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 219, 769
BstNI	CCWGG	1 cut(s)	856
BstSCI	CCNGG	1 cut(s)	854
BstUI	CGCG	2 cut(s)	428, 462
BstV1I	GCAGC	2 cut(s)	127, 467
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	324
BstXI	CCANNNNNNTGG	1 cut(s)	729
BstYI	RGATCY	1 cut(s)	324
BstZ17I	GTATAC	1 cut(s)	508
BstZI	CGGCCG	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	9, 371
BtgI	CCRYGG	1 cut(s)	722
BtrI	CACGTC	1 cut(s)	672
BtsCI	GGATG	3 cut(s)	18, 195, 856
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	7 cut(s)	177, 220, 500, 735, 739, 770, 803
CfoI	GCGC	2 cut(s)	115, 743
Cfr13I	GGNCC	3 cut(s)	41, 486, 814
CseI	GACGC	2 cut(s)	434, 473
Csp6I	GTAC	1 cut(s)	30
CspCI	CAANNNNNGTGG	4 cut(s)	658, 693, 763, 798
CviAII	CATG	1 cut(s)	542
CviQI	GTAC	1 cut(s)	30
DpnI	GATC	3 cut(s)	5, 18, 326
DpnII	GATC	3 cut(s)	3, 16, 324
EaeI	YGGCCR	1 cut(s)	7
EagI	CGGCCG	1 cut(s)	7
Eam1104I	CTCTTC	2 cut(s)	149, 641
EarI	CTCTTC	2 cut(s)	149, 641
EclXI	CGGCCG	1 cut(s)	7
Eco130I	CCWWGG	3 cut(s)	195, 310, 806
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	3 cut(s)	41, 486, 814
Eco52I	CGGCCG	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	854
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	195, 310, 806
ErhI	CCWWGG	3 cut(s)	195, 310, 806
FaeI	CATG	1 cut(s)	545
FaiI	YATR	5 cut(s)	93, 209, 345, 508, 543
FalI	AAGNNNNNCTT	6 cut(s)	45, 77, 146, 178, 599, 631
FaqI	GGGAC	2 cut(s)	328, 827
FatI	CATG	1 cut(s)	541
FblI	GTMKAC	2 cut(s)	423, 507
Fnu4HI	GCNGC	2 cut(s)	116, 481
FokI	GGATG	3 cut(s)	25, 202, 863
Fsp4HI	GCNGC	2 cut(s)	116, 481
FspBI	CTAG	1 cut(s)	822
FspI	TGCGCA	1 cut(s)	742
GlaI	GCGC	2 cut(s)	114, 742
GluI	GCNGC	2 cut(s)	116, 481
GsaI	CCCAGC	1 cut(s)	364
HaeIII	GGCC	2 cut(s)	9, 371
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	2 cut(s)	434, 473
HhaI	GCGC	2 cut(s)	115, 743
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	545
Hin6I	GCGC	2 cut(s)	113, 741
HinP1I	GCGC	2 cut(s)	113, 741
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	3 cut(s)	203, 262, 500
HinfI	GANTC	4 cut(s)	376, 680, 702, 825
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	3 cut(s)	359, 425, 830
Hpy166II	GTNNAC	4 cut(s)	424, 489, 508, 669
Hpy188I	TCNGA	3 cut(s)	45, 381, 623
Hpy188III	TCNNGA	4 cut(s)	62, 451, 643, 684
Hpy8I	GTNNAC	4 cut(s)	424, 489, 508, 669
Hpy99I	CGWCG	5 cut(s)	30, 428, 467, 676, 713
HpyAV	CCTTC	3 cut(s)	141, 618, 868
HpyCH4III	ACNGT	1 cut(s)	726
HpyCH4IV	ACGT	4 cut(s)	28, 317, 335, 671
HpyCH4V	TGCA	3 cut(s)	82, 222, 768
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 219, 769
HpySE526I	ACGT	4 cut(s)	28, 317, 335, 671
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	545
HspAI	GCGC	2 cut(s)	113, 741
Kzo9I	GATC	3 cut(s)	3, 16, 324
LmnI	GCTCC	3 cut(s)	283, 472, 785
Lsp1109I	GCAGC	2 cut(s)	127, 467
LweI	GCATC	1 cut(s)	841
MaeI	CTAG	1 cut(s)	822
MaeII	ACGT	4 cut(s)	28, 317, 335, 671
MaeIII	GTNAC	3 cut(s)	289, 304, 347
MalI	GATC	3 cut(s)	5, 18, 326
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	3 cut(s)	3, 16, 324
MboII	GAAGA	3 cut(s)	131, 166, 658
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	4 cut(s)	25, 280, 399, 660
MluCI	AATT	4 cut(s)	94, 231, 560, 570
MluI	ACGCGT	1 cut(s)	426
MlyI	GAGTC	3 cut(s)	370, 696, 834
MnlI	CCTC	9 cut(s)	67, 165, 179, 304, 361, 527, 642, 650, 673
MseI	TTAA	2 cut(s)	266, 573
MslI	CAYNNNNRTG	1 cut(s)	849
MspCI	CTTAAG	1 cut(s)	265
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	856
MvaI	CCWGG	1 cut(s)	856
MvnI	CGCG	2 cut(s)	428, 462
MwoI	GCNNNNNNNGC	3 cut(s)	110, 219, 769
NdeII	GATC	3 cut(s)	3, 16, 324
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	3 cut(s)	326, 787, 815
NmuCI	GTSAC	1 cut(s)	347
NsbI	TGCGCA	1 cut(s)	742
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	680
PkrI	GCNGC	2 cut(s)	117, 482
PleI	GAGTC	3 cut(s)	370, 696, 833
PpsI	GAGTC	3 cut(s)	370, 696, 833
Psp1406I	AACGTT	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	854
PspFI	CCCAGC	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	854
PspN4I	GGNNCC	3 cut(s)	326, 787, 815
PspPI	GGNCC	3 cut(s)	41, 486, 814
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	849
SalI	GTCGAC	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	266, 573
SatI	GCNGC	2 cut(s)	116, 481
Sau3AI	GATC	3 cut(s)	3, 16, 324
Sau96I	GGNCC	3 cut(s)	41, 486, 814
SchI	GAGTC	3 cut(s)	370, 696, 834
ScrFI	CCNGG	1 cut(s)	856
SduI	GDGCHC	4 cut(s)	25, 280, 399, 660
SfaNI	GCATC	1 cut(s)	841
SinI	GGWCC	3 cut(s)	41, 486, 814
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	4 cut(s)	94, 231, 560, 570
SsiI	CCGC	4 cut(s)	228, 297, 460, 715
SspMI	CTAG	1 cut(s)	822
StyD4I	CCNGG	1 cut(s)	854
StyI	CCWWGG	3 cut(s)	195, 310, 806
TaaI	ACNGT	1 cut(s)	726
TaiI	ACGT	4 cut(s)	31, 320, 338, 674
TaqI	TCGA	3 cut(s)	25, 235, 423
TasI	AATT	4 cut(s)	94, 231, 560, 570
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	2 cut(s)	266, 573
Tru9I	TTAA	2 cut(s)	266, 573
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	2 cut(s)	115, 480
Tsp45I	GTSAC	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	249
Vha464I	CTTAAG	1 cut(s)	265
VpaK11BI	GGWCC	3 cut(s)	41, 486, 814
XapI	RAATTY	1 cut(s)	560
XmiI	GTMKAC	2 cut(s)	423, 507
XspI	CTAG	1 cut(s)	822
ZraI	GACGTC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.