Rroxscaffold_7G00170980

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
11382674 .. 11389043
6370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170980.1

Sequence Viewer

Length: 351 bp
ATGGAGGTTACAAATTGGGATGTTGCAAGCGAAAGTCCTTTTTCGAAAGGCAAAAGAAAGAGCCTTGTGACGAGGTTGGTGCTCTCTTCATCCACAACGCTTGAGAAAAAGTCATATCAAGTGACGCTCCGACGACCGCATCGCAAGGTGTTGGCACGATCCGCACTCAAAAGAGACAGCTTTGCTACCCATATCGGTTTTAGAGCCAAACAGGATGGGCCCGTTTTTGTAGGTGATTTTCGTTTGAATGGGTTTCAACTCCGTTTGAATGGTTATTGTTCTCTCCCATTGGGAGCTAGTGTTCAGTTTTTGAACAGTGTGTTGTTCCAAATTGTTCAGTTAGTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.06

Weight (kDa)

10.53

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 137, 162
AclWI GGATC 1 cut(s) 153
AgsI TTSAA 4 cut(s) 247, 257, 268, 313
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
AluBI AGCT 2 cut(s) 180, 296
AluI AGCT 2 cut(s) 180, 296
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 153
AoxI GGCC 1 cut(s) 218
ApaI GGGCCC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 218, 219
AsuHPI GGTGA 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 222
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 84
BccI CCATC 1 cut(s) 209
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 297
BmgT120I GGNCC 2 cut(s) 218, 219
BmiI GGNNCC 1 cut(s) 220
BmsI GCATC 1 cut(s) 148
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
BseGI GGATG 3 cut(s) 25, 89, 220
BseSI GKGCMC 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 220
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 168
BsnI GGCC 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 44
Bsp120I GGGCCC 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 84, 222
Bsp143I GATC 1 cut(s) 158
BspACI CCGC 2 cut(s) 137, 162
BspANI GGCC 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 1 cut(s) 153
BspT104I TTCGAA 1 cut(s) 44
BssMI GATC 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 28
BstF5I GGATG 3 cut(s) 25, 89, 220
BstKTI GATC 1 cut(s) 161
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 1 cut(s) 158
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstSLI GKGCMC 1 cut(s) 222
BsuRI GGCC 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 125
BtsCI GGATG 3 cut(s) 25, 89, 220
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 218, 219
CseI GACGC 1 cut(s) 133
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviJI RGCY 5 cut(s) 63, 180, 206, 220, 296
CviKI_1 RGCY 5 cut(s) 63, 180, 206, 220, 296
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 222
FaiI YATR 2 cut(s) 115, 192
FokI GGATG 3 cut(s) 32, 76, 227
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 220
HgaI GACGC 1 cut(s) 133
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 135
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 132, 293
LpnPI CCDG 1 cut(s) 197
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 7, 67, 121
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 1 cut(s) 78
MhlI GDGCHC 2 cut(s) 84, 222
MluCI AATT 2 cut(s) 13, 330
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 220
NmuCI GTSAC 2 cut(s) 67, 121
NspV TTCGAA 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 220
PspOMI GGGCCC 1 cut(s) 218
PspPI GGNCC 2 cut(s) 218, 219
Sau3AI GATC 1 cut(s) 158
Sau96I GGNCC 2 cut(s) 218, 219
SduI GDGCHC 2 cut(s) 84, 222
SetI ASST 6 cut(s) 9, 77, 150, 182, 235, 298
SfaNI GCATC 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 13, 330
SsiI CCGC 2 cut(s) 137, 162
SspMI CTAG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 317
TaqI TCGA 2 cut(s) 44, 345
TasI AATT 2 cut(s) 13, 330
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 2 cut(s) 67, 121
Tsp45I GTSAC 2 cut(s) 67, 121
TspDTI ATGAA 1 cut(s) 78
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 322
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.