Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007199.1

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Forward (+)

28070 .. 33152

Gene Structure 5083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007199.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgggaggtggaggacgggaaatgagggtcaatggaggattgattatcctagtctcctcgcgagccgactgtcagcttcaccagatcaacccggcgaccgtacttccagtcccagtctccccaggagccgactgcgagcacaaccgccactgttacttccagcgaagcaaggcgcttgaagaagaagtcaggtcaagggactaccccaacgactgcaccccgcggtgctggcacgcctgcgcaaccactcgcccaaaagagactgaacttgattttcgtgaaagcgctaagtgttttaagcgaattgaggaagcagtctcgagctcattctcctcctcctcacttgaagtcgccgccattgttaccctcatcgcctccttcatctacctcctcggcttctttggcatcgacttcgtccagtcctttatctcacgcgcctcctactacgatgacgccattgcgtcttactttctcgaattgaagctcggcgactgcaagagagcggcggagattcggcgtgagtggcttctcatcacaactcctcatctccgatcagtagttgcaaactttatggtgttttgtagagagttgtactctatcggtatgtggctagaggatagcttgagctcaggaaaaaaagtaccagaagatttgtaccatctgaaattggaatcagacaagtcttctagtgattacatttccagtgatgaagaaaccccaaaaccgaaaaagagaagatcctcctctcctgatgagttgtctcatattccgagtcccaaaacccctaaagctccaagtaaggatcgtgtcattgcagtcatccatgccctacaggccacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006287 GO:0006289 GO:0006302 GO:0006303 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016740 GO:0016772 GO:0016779 GO:0016829 GO:0016835 GO:0018130 GO:0019438 GO:0030145 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051575 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097510 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko03450 map03410 map03450

Pfam Domains

Protein Families

BRCT DNA_pol_B_palm DNA_pol_B_thumb DNA_pol_lambd_f HHH_8 LIM

Protein Analysis

280

Amino Acids

31.42

Weight (kDa)

6.71

Isoelectric Point (pI)

65.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	241
AccBSI	CCGCTC	1 cut(s)	503
AccII	CGCG	3 cut(s)	61, 223, 435
AciI	CCGC	6 cut(s)	145, 221, 223, 354, 503, 506
AclWI	GGATC	2 cut(s)	732, 810
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	4 cut(s)	102, 593, 642, 656
AfeI	AGCGCT	1 cut(s)	286
AgsI	TTSAA	3 cut(s)	179, 347, 481
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	6 cut(s)	76, 324, 484, 621, 627, 791
AluI	AGCT	6 cut(s)	76, 324, 484, 621, 627, 791
Alw21I	GWGCWC	3 cut(s)	141, 326, 629
Alw26I	GTCTC	5 cut(s)	58, 121, 254, 322, 765
AlwI	GGATC	2 cut(s)	732, 810
Ama87I	CYCGRG	1 cut(s)	319
Aor51HI	AGCGCT	1 cut(s)	286
AoxI	GGCC	1 cut(s)	834
AspLEI	GCGC	4 cut(s)	175, 242, 287, 437
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	319
BanII	GRGCYC	2 cut(s)	326, 629
BbsI	GAAGAC	1 cut(s)	675
Bbv12I	GWGCWC	3 cut(s)	141, 326, 629
BccI	CCATC	1 cut(s)	666
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	5 cut(s)	58, 121, 254, 322, 765
BfaI	CTAG	3 cut(s)	50, 611, 687
BfmI	CTRYAG	1 cut(s)	830
BfoI	RGCGCY	2 cut(s)	176, 288
BglI	GCCNNNNNGGC	1 cut(s)	833
BisI	GCNGC	2 cut(s)	354, 504
BlsI	GCNGC	2 cut(s)	355, 505
Bme1390I	CCNGG	2 cut(s)	92, 123
BmeT110I	CYCGRG	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	2 cut(s)	92, 123
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	414
BmuI	ACTGGG	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	675
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
Bpu10I	CCTNAGC	1 cut(s)	628
BpuEI	CTTGAG	1 cut(s)	643
BpuMI	CCSGG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	3 cut(s)	121, 221, 391
Bse1I	ACTGG	4 cut(s)	107, 113, 418, 702
Bse3DI	GCAATG	2 cut(s)	456, 810
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	121, 221, 391
BseGI	GGATG	1 cut(s)	819
BseMI	GCAATG	2 cut(s)	456, 810
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	4 cut(s)	107, 113, 418, 702
BseRI	GAGGAG	7 cut(s)	46, 322, 325, 328, 380, 531, 733
BsgI	GTGCAG	1 cut(s)	199
Bsh1236I	CGCG	3 cut(s)	61, 223, 435
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	836
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	3 cut(s)	141, 326, 629
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	3 cut(s)	95, 212, 759
BsmAI	GTCTC	5 cut(s)	58, 121, 254, 322, 765
BsmFI	GGGAC	3 cut(s)	95, 212, 759
BsnI	GGCC	1 cut(s)	836
BsoBI	CYCGRG	1 cut(s)	319
Bsp1286I	GDGCHC	3 cut(s)	141, 326, 629
Bsp143I	GATC	4 cut(s)	84, 551, 737, 802
Bsp68I	TCGCGA	1 cut(s)	61
BspACI	CCGC	6 cut(s)	145, 221, 223, 354, 503, 506
BspANI	GGCC	1 cut(s)	836
BspCNI	CTCAG	1 cut(s)	641
BspFNI	CGCG	3 cut(s)	61, 223, 435
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	2 cut(s)	732, 810
BsrBI	CCGCTC	1 cut(s)	503
BsrDI	GCAATG	2 cut(s)	456, 810
BsrI	ACTGG	4 cut(s)	107, 113, 418, 702
BssECI	CCNNGG	3 cut(s)	121, 221, 391
BssMI	GATC	4 cut(s)	84, 551, 737, 802
BssNI	GRCGYC	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	3 cut(s)	71, 100, 152
BstACI	GRCGYC	1 cut(s)	453
BstC8I	GCNNGC	5 cut(s)	63, 137, 230, 234, 238
BstDEI	CTNAG	2 cut(s)	288, 628
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	819
BstFNI	CGCG	3 cut(s)	61, 223, 435
BstH2I	RGCGCY	2 cut(s)	176, 288
BstHHI	GCGC	4 cut(s)	175, 242, 287, 437
BstKTI	GATC	4 cut(s)	87, 554, 740, 805
BstMAI	GTCTC	5 cut(s)	58, 121, 254, 322, 765
BstMBI	GATC	4 cut(s)	84, 551, 737, 802
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 402, 523, 833
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	90, 121
BstSFI	CTRYAG	1 cut(s)	830
BstUI	CGCG	3 cut(s)	61, 223, 435
BstV2I	GAAGAC	1 cut(s)	675
BstX2I	RGATCY	1 cut(s)	737
BstYI	RGATCY	1 cut(s)	737
BsuRI	GGCC	1 cut(s)	836
BtgI	CCRYGG	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	819
BtsIMutI	CAGTG	2 cut(s)	148, 709
BtuMI	TCGCGA	1 cut(s)	61
Cac8I	GCNNGC	5 cut(s)	63, 137, 230, 234, 238
CfoI	GCGC	4 cut(s)	175, 242, 287, 437
Cfr42I	CCGCGG	1 cut(s)	224
CseI	GACGC	2 cut(s)	450, 461
Csp6I	GTAC	4 cut(s)	101, 592, 641, 655
CviAII	CATG	1 cut(s)	824
CviQI	GTAC	4 cut(s)	101, 592, 641, 655
DdeI	CTNAG	2 cut(s)	288, 628
DpnI	GATC	4 cut(s)	86, 553, 739, 804
DpnII	GATC	4 cut(s)	84, 551, 737, 802
EciI	GGCGGA	1 cut(s)	521
Ecl136II	GAGCTC	2 cut(s)	324, 627
Eco24I	GRGCYC	2 cut(s)	326, 629
Eco47III	AGCGCT	1 cut(s)	286
Eco53kI	GAGCTC	2 cut(s)	324, 627
Eco88I	CYCGRG	1 cut(s)	319
EcoICRI	GAGCTC	2 cut(s)	324, 627
EcoRII	CCWGG	1 cut(s)	121
EcoT38I	GRGCYC	2 cut(s)	326, 629
FaeI	CATG	1 cut(s)	827
FaiI	YATR	4 cut(s)	572, 605, 765, 825
FaqI	GGGAC	3 cut(s)	95, 212, 759
FatI	CATG	1 cut(s)	823
FauI	CCCGC	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	354, 504
FokI	GGATG	1 cut(s)	806
FriOI	GRGCYC	2 cut(s)	326, 629
Fsp4HI	GCNGC	2 cut(s)	354, 504
FspBI	CTAG	3 cut(s)	50, 611, 687
FspI	TGCGCA	1 cut(s)	241
GlaI	GCGC	4 cut(s)	174, 241, 286, 436
GluI	GCNGC	2 cut(s)	354, 504
HaeII	RGCGCY	2 cut(s)	176, 288
HaeIII	GGCC	1 cut(s)	836
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	2 cut(s)	450, 461
HhaI	GCGC	4 cut(s)	175, 242, 287, 437
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	1 cut(s)	827
Hin6I	GCGC	4 cut(s)	173, 240, 285, 435
HinP1I	GCGC	4 cut(s)	173, 240, 285, 435
HinfI	GANTC	3 cut(s)	511, 671, 772
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	4 cut(s)	551, 663, 676, 771
Hpy188III	TCNNGA	6 cut(s)	60, 278, 319, 473, 630, 749
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	3 cut(s)	71, 100, 152
HpyCH4V	TGCA	4 cut(s)	216, 495, 563, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 402, 523, 833
HpyF3I	CTNAG	2 cut(s)	288, 628
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	1 cut(s)	827
HspAI	GCGC	4 cut(s)	173, 240, 285, 435
KspI	CCGCGG	1 cut(s)	224
Kzo9I	GATC	4 cut(s)	84, 551, 737, 802
LmnI	GCTCC	2 cut(s)	125, 796
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	3 cut(s)	50, 611, 687
MaeIII	GTNAC	2 cut(s)	152, 361
MalI	GATC	4 cut(s)	86, 553, 739, 804
MbiI	CCGCTC	1 cut(s)	503
MboI	GATC	4 cut(s)	84, 551, 737, 802
MboII	GAAGA	6 cut(s)	191, 194, 659, 675, 722, 747
MflI	RGATCY	1 cut(s)	737
MhlI	GDGCHC	3 cut(s)	141, 326, 629
MluCI	AATT	3 cut(s)	303, 476, 665
MlyI	GAGTC	1 cut(s)	781
MseI	TTAA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	2 cut(s)	92, 123
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	3 cut(s)	61, 223, 435
MwoI	GCNNNNNNNGC	4 cut(s)	229, 402, 523, 833
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	4 cut(s)	84, 551, 737, 802
NlaIII	CATG	1 cut(s)	827
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	2 cut(s)	372, 465
NruI	TCGCGA	1 cut(s)	61
NsbI	TGCGCA	1 cut(s)	241
PaeR7I	CTCGAG	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	511, 671
PflFI	GACNNNGTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	355, 505
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
Psp124BI	GAGCTC	2 cut(s)	326, 629
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	737
PsyI	GACNNNGTC	1 cut(s)	413
RruI	TCGCGA	1 cut(s)	61
RsaI	GTAC	4 cut(s)	102, 593, 642, 656
RsaNI	GTAC	4 cut(s)	101, 592, 641, 655
SacI	GAGCTC	2 cut(s)	326, 629
SacII	CCGCGG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	354, 504
Sau3AI	GATC	4 cut(s)	84, 551, 737, 802
SchI	GAGTC	1 cut(s)	781
ScrFI	CCNGG	2 cut(s)	92, 123
SduI	GDGCHC	3 cut(s)	141, 326, 629
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	830
Sfr274I	CTCGAG	1 cut(s)	319
Sfr303I	CCGCGG	1 cut(s)	224
SgrBI	CCGCGG	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	319
SmlI	CTYRAG	2 cut(s)	319, 622
SmoI	CTYRAG	2 cut(s)	319, 622
Sse9I	AATT	3 cut(s)	303, 476, 665
SsiI	CCGC	6 cut(s)	145, 221, 223, 354, 503, 506
SspMI	CTAG	3 cut(s)	50, 611, 687
SstI	GAGCTC	2 cut(s)	326, 629
StyD4I	CCNGG	2 cut(s)	90, 121
TaaI	ACNGT	3 cut(s)	71, 100, 152
TaqI	TCGA	3 cut(s)	320, 408, 474
TasI	AATT	3 cut(s)	303, 476, 665
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	2 cut(s)	356, 506
TfiI	GAWTC	2 cut(s)	511, 671
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	2 cut(s)	155, 709
TspDTI	ATGAA	2 cut(s)	370, 723
TspRI	CASTG	2 cut(s)	155, 709
Tth111I	GACNNNGTC	1 cut(s)	413
XhoI	CTCGAG	1 cut(s)	319
XspI	CTAG	3 cut(s)	50, 611, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.