Rroxscaffold_5G00358350

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
38423352 .. 38439358
16007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358350.1

Sequence Viewer

Length: 486 bp
ATGGGGGACTCGACGAAATCTAGGCCAATATTAGTGGCTCAAGCTATTGATTTCCGACAAGTTCGGAATATATTGTTTAGAGGCCAAATAAGGCCTACTTGGAGATCAAGCAATCGTGAGGCAAATCGTGATATTCATGGATTTACTAGCAAGAAGTCCTTTTCCGGAAGGCAAGAAAAGAACCCCGTGACGAGGTTGGTGCTCTCCTCGTCCACAACGCTTGAAGAAGAAGTCAGGTCACGGAACTACCCCAACGACCGCACCCCGCGATGGGACTTGGAAATTTTGAATCTAAAATGGAAAGGTTTGGGTGGTTTGCTTCCATTAGAAATGGCGTTTTCTATAAACGTAGTGCAATCCAATTATGCGATGTCATTAAATTGGTTTGAGTCTGCAATAATTAAAGCTATGAGAATCCTCACTAATCTAGCAGAACAGGATATTCGTCGGTCCAAGTTTCAGGGGAAACATTGCCTTGAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.62

Weight (kDa)

10.36

Isoelectric Point (pI)

61.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 268
AccIII TCCGGA 1 cut(s) 164
AciI CCGC 2 cut(s) 259, 266
AcsI RAATTY 1 cut(s) 282
AfiI CCNNNNNNNGG 3 cut(s) 192, 270, 271
AgsI TTSAA 2 cut(s) 224, 289
AluBI AGCT 2 cut(s) 44, 407
AluI AGCT 2 cut(s) 44, 407
Alw21I GWGCWC 1 cut(s) 204
Aor13HI TCCGGA 1 cut(s) 164
AoxI GGCC 3 cut(s) 23, 82, 92
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 450
AvaII GGWCC 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 1 cut(s) 264
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BfaI CTAG 3 cut(s) 21, 147, 428
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 270, 271
Bse3DI GCAATG 1 cut(s) 469
BseAI TCCGGA 1 cut(s) 164
BseLI CCNNNNNNNGG 3 cut(s) 192, 270, 271
BseMI GCAATG 1 cut(s) 469
BseRI GAGGAG 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 268
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 3 cut(s) 25, 84, 94
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 2 cut(s) 20, 287
BslI CCNNNNNNNGG 3 cut(s) 192, 270, 271
BsmFI GGGAC 2 cut(s) 20, 287
BsnI GGCC 3 cut(s) 25, 84, 94
Bsp1286I GDGCHC 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 164
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 2 cut(s) 259, 266
BspANI GGCC 3 cut(s) 25, 84, 94
BspEI TCCGGA 1 cut(s) 164
BspFNI CGCG 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 469
BssMI GATC 1 cut(s) 104
BstFNI CGCG 1 cut(s) 268
BstKTI GATC 1 cut(s) 107
BstMBI GATC 1 cut(s) 104
BstMCI CGRYCG 1 cut(s) 259
BstUI CGCG 1 cut(s) 268
BsuRI GGCC 3 cut(s) 25, 84, 94
BtgZI GCGATG 2 cut(s) 283, 383
Cfr13I GGNCC 1 cut(s) 450
CspCI CAANNNNNGTGG 4 cut(s) 15, 50, 202, 237
CviAII CATG 1 cut(s) 137
CviJI RGCY 6 cut(s) 25, 38, 44, 84, 94, 407
CviKI_1 RGCY 6 cut(s) 25, 38, 44, 84, 94, 407
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
Eco147I AGGCCT 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 450
FaeI CATG 1 cut(s) 140
FaiI YATR 5 cut(s) 71, 138, 344, 366, 410
FalI AAGNNNNNCTT 4 cut(s) 82, 114, 143, 175
FaqI GGGAC 2 cut(s) 20, 287
FatI CATG 1 cut(s) 136
FauI CCCGC 1 cut(s) 273
FspBI CTAG 3 cut(s) 21, 147, 428
HaeIII GGCC 3 cut(s) 25, 84, 94
HapII CCGG 1 cut(s) 165
Hin1II CATG 1 cut(s) 140
HinfI GANTC 4 cut(s) 8, 289, 389, 414
HpaII CCGG 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 56, 66
Hpy188III TCNNGA 3 cut(s) 116, 128, 165
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 2 cut(s) 16, 450
HpyAV CCTTC 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 2 cut(s) 355, 395
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 1 cut(s) 140
Kpn2I TCCGGA 1 cut(s) 164
Kzo9I GATC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 178, 220, 422, 446
MaeI CTAG 3 cut(s) 21, 147, 428
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 187, 237
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 2 cut(s) 236, 239
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 4 cut(s) 282, 361, 379, 399
MlyI GAGTC 2 cut(s) 2, 398
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 6 cut(s) 74, 112, 186, 217, 428, 472
MroI TCCGGA 1 cut(s) 164
MseI TTAA 2 cut(s) 377, 402
MspI CCGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 268
NdeII GATC 1 cut(s) 104
NlaIII CATG 1 cut(s) 140
NmuCI GTSAC 2 cut(s) 187, 237
PceI AGGCCT 1 cut(s) 94
PfeI GAWTC 2 cut(s) 289, 414
PleI GAGTC 2 cut(s) 2, 397
PpsI GAGTC 2 cut(s) 2, 397
PspPI GGNCC 1 cut(s) 450
SaqAI TTAA 2 cut(s) 377, 402
Sau3AI GATC 1 cut(s) 104
Sau96I GGNCC 1 cut(s) 450
SchI GAGTC 2 cut(s) 2, 398
SduI GDGCHC 1 cut(s) 204
SetI ASST 7 cut(s) 46, 197, 239, 307, 351, 409, 483
SinI GGWCC 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 39, 476
SmoI CTYRAG 2 cut(s) 39, 476
Sse9I AATT 4 cut(s) 282, 361, 379, 399
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 2 cut(s) 259, 266
SspI AATATT 1 cut(s) 30
SspMI CTAG 3 cut(s) 21, 147, 428
StuI AGGCCT 1 cut(s) 94
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 11
TaqII GACCGA 1 cut(s) 438
TasI AATT 4 cut(s) 282, 361, 379, 399
TfiI GAWTC 2 cut(s) 289, 414
Tru1I TTAA 2 cut(s) 377, 402
Tru9I TTAA 2 cut(s) 377, 402
TseFI GTSAC 2 cut(s) 187, 237
Tsp45I GTSAC 2 cut(s) 187, 237
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 450
XapI RAATTY 1 cut(s) 282
XspI CTAG 3 cut(s) 21, 147, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.