Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006059.1

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Reverse (-)

209482 .. 210273

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006059.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgcaagatatcacaacacaagcccttatccgtaaggcaagaagtccttttttgaaaggtagagaaaagaaccttgtgacaaggttggtgctctcctcgtccacatcgtttgatcaagaagtcaggtcaagggactcctcgacgactgcacccaacggagccggcacgctggcgcactcaaaagagactgtttgcaaccagactgaggatgggagcatagaggagcagcttgccatcttccagcagaacaacgcatcgtactatgagaagaacagaaaagagctcgctgaagagcaatggaagattgatgaccttgttaatagggtccaagtcctgggcaaggtttgcagcagacacaggggcgtctggataacatgtcctagcgaagccaagcaaaccacgagcaactcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.39

Weight (kDa)

8.49

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	3 cut(s)	205, 334, 340
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	2 cut(s)	229, 283
AluI	AGCT	2 cut(s)	229, 283
Alw21I	GWGCWC	2 cut(s)	93, 285
Alw26I	GTCTC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	226, 348
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	285
BauI	CACGAG	2 cut(s)	400, 409
Bbv12I	GWGCWC	2 cut(s)	93, 285
BbvI	GCAGC	2 cut(s)	238, 360
BccI	CCATC	2 cut(s)	203, 242
BciT130I	CCWGG	1 cut(s)	335
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	381
BisI	GCNGC	2 cut(s)	227, 349
BlsI	GCNGC	2 cut(s)	228, 350
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	160, 326
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 334, 340
Bse118I	RCCGGY	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	3 cut(s)	205, 334, 340
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	3 cut(s)	85, 127, 236
BseXI	GCAGC	2 cut(s)	238, 360
BsgI	GTGCAG	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	93, 285
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	3 cut(s)	205, 334, 340
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	93, 285
Bsp143I	GATC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	160, 326
BspQI	GCTCTTC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	112
BssNI	GRCGYC	1 cut(s)	363
BssSI	CACGAG	2 cut(s)	400, 409
Bst2BI	CACGAG	2 cut(s)	400, 409
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstC8I	GCNNGC	5 cut(s)	163, 167, 171, 231, 285
BstDEI	CTNAG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	238, 360
BtsCI	GGATG	1 cut(s)	214
Cac8I	GCNNGC	5 cut(s)	163, 167, 171, 231, 285
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviAII	CATG	1 cut(s)	375
CviJI	RGCY	5 cut(s)	23, 161, 229, 283, 389
CviKI_1	RGCY	5 cut(s)	23, 161, 229, 283, 389
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	333
EcoRV	GATATC	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	1 cut(s)	378
FaiI	YATR	3 cut(s)	218, 264, 376
FalI	AAGNNNNNCTT	2 cut(s)	31, 63
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	227, 349
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	227, 349
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	227, 349
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	1 cut(s)	378
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	1 cut(s)	162
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188III	TCNNGA	3 cut(s)	116, 367, 411
Hpy8I	GTNNAC	1 cut(s)	102
Hpy99I	CGWCG	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	4 cut(s)	4, 149, 195, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	1 cut(s)	378
HspAI	GCGC	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	3 cut(s)	158, 213, 223
LpnPI	CCDG	9 cut(s)	109, 155, 175, 212, 254, 320, 343, 347, 352
Lsp1109I	GCAGC	2 cut(s)	238, 360
LweI	GCATC	1 cut(s)	263
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	4 cut(s)	229, 280, 302, 313
MhlI	GDGCHC	2 cut(s)	93, 285
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	4 cut(s)	106, 148, 199, 214
MroNI	GCCGGC	1 cut(s)	161
MseI	TTAA	1 cut(s)	318
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	345
NaeI	GCCGGC	1 cut(s)	163
NdeII	GATC	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	378
NlaIV	GGNNCC	2 cut(s)	160, 326
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	378
PciI	ACATGT	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 407
PdiI	GCCGGC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	228, 350
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PscI	ACATGT	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	160, 326
PspPI	GGNCC	1 cut(s)	325
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SacI	GAGCTC	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	227, 349
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	2 cut(s)	93, 285
SetI	ASST	8 cut(s)	61, 75, 86, 128, 231, 285, 315, 345
SfaNI	GCATC	1 cut(s)	263
SinI	GGWCC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	381
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	226, 348
Tsp45I	GTSAC	1 cut(s)	76
TspGWI	ACGGA	2 cut(s)	20, 171
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	325
XagI	CCTNNNNNAGG	1 cut(s)	338
XceI	RCATGY	1 cut(s)	378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.