FvH4_4g04210

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000594
Physical Location & Seq
Reverse (-)
3633286 .. 3634593
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04210.t1

Sequence Viewer

Length: 759 bp
ATGAAATCTCAAGTTTCGTTACTCTATCTTTTGGTGGTCACCATCGGTTTTTCAGGAGCTCAATCAGCTACGTTCACGTTCACGAACAACTGCCCCTTCACAGTTTGGCCCGGAACCCTAACCGGCGGTGGTGGTGCACAACTATCCTCAACCGGGTTCGAGTTAGCATCCGGTGCCTCCTCAACTCTAGACGTCCCAGCTCCATGGTCCGGCCGCTTCTGGGGTCGGACTCAGTGCTCCACAGACGCCTCAGGAAAGTTCACCTGCGCCACTGCAGACTGCGGCTCAGGTCAAGTCGCATGCCACGGCGCTGGTGCAATTCCACCTGCGTCACTGGTGGAACTGACCCTAGCAGGAAACGGCGGCCAAGACTTCTATGATATTAGCCTCGTTGATGGCTTCAACGTCCCCGTCCTACTATCACCTCAAGGCGGCTCCGGCGGATGCAGCGCCACGACCTGCGCCGGAAATGTCAATGCGGTTTGTCCGGCGGAGTTGGCTGTGAAAGGATCAGATGGTGGTGTGATTGCTTGCAAAAGTGCGTGTTTGGTTTTCAATCAGCCTCAATATTGTTGCACCGGCGACCATGGTACACCGGAAACCTGCCCTCCGACGGACTATTCGAGGGTCTTCAAGAACCAGTGCCCCCAGGCTTATAGTTATGCTTATGATGATAAGTCTAGCACCTTCACATGTAACGGTGGACCTAATTATTTGGTTACCTTTTGTCCTCGAGCAGTAGAAATGTGTGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

253

Amino Acids

25.81

Weight (kDa)

4.67

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 244 3e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 272, 334
AatII GACGTC 1 cut(s) 195
Acc36I ACCTGC 4 cut(s) 272, 334, 467, 611
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 8 cut(s) 126, 214, 282, 363, 432, 441, 479, 491
AclWI GGATC 1 cut(s) 517
AcoI YGGCCR 2 cut(s) 211, 364
AcyI GRCGYC 2 cut(s) 192, 246
AfaI GTAC 1 cut(s) 592
AfiI CCNNNNNNNGG 5 cut(s) 153, 209, 220, 431, 613
AflIII ACRYGT 1 cut(s) 692
AgsI TTSAA 3 cut(s) 403, 556, 634
AjnI CCWGG 1 cut(s) 648
AluBI AGCT 3 cut(s) 59, 68, 200
AluI AGCT 3 cut(s) 59, 68, 200
Alw21I GWGCWC 3 cut(s) 61, 139, 239
Alw44I GTGCAC 1 cut(s) 135
AlwI GGATC 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 732
AoxI GGCC 3 cut(s) 107, 211, 364
ApaLI GTGCAC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 447
ArsI GACNNNNNNTTYG 2 cut(s) 604, 636
AspLEI GCGC 4 cut(s) 269, 311, 452, 464
AspS9I GGNCC 3 cut(s) 108, 207, 704
AsuC2I CCSGG 2 cut(s) 111, 154
AsuHPI GGTGA 3 cut(s) 31, 253, 414
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 2 cut(s) 207, 704
AxyI CCTNAGG 1 cut(s) 250
BaeGI GKGCMC 2 cut(s) 139, 647
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 622
Bbv12I GWGCWC 3 cut(s) 61, 139, 239
BbvI GCAGC 1 cut(s) 459
BccI CCATC 3 cut(s) 50, 389, 509
BceAI ACGGC 2 cut(s) 322, 376
BciT130I CCWGG 1 cut(s) 650
BcnI CCSGG 2 cut(s) 111, 154
BfaI CTAG 3 cut(s) 188, 350, 681
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 2 cut(s) 312, 453
BfuAI ACCTGC 4 cut(s) 272, 334, 467, 611
BisI GCNGC 5 cut(s) 214, 283, 364, 433, 448
BlsI GCNGC 5 cut(s) 215, 284, 365, 434, 449
Bme1390I CCNGG 3 cut(s) 111, 154, 650
Bme18I GGWCC 2 cut(s) 207, 704
BmeT110I CYCGRG 1 cut(s) 732
BmgT120I GGNCC 3 cut(s) 108, 207, 704
BmiI GGNNCC 3 cut(s) 115, 175, 436
BmrFI CCNGG 3 cut(s) 111, 154, 650
BmsI GCATC 2 cut(s) 176, 434
BpiI GAAGAC 1 cut(s) 622
Bpu10I CCTNAGC 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 2 cut(s) 111, 154
BsaHI GRCGYC 2 cut(s) 192, 246
BsaJI CCNNGG 4 cut(s) 203, 304, 586, 648
BsaWI WCCGGW 2 cut(s) 170, 595
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 5 cut(s) 153, 209, 220, 431, 613
Bse118I RCCGGY 2 cut(s) 122, 578
Bse1I ACTGG 2 cut(s) 339, 640
Bse21I CCTNAGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 650
BseDI CCNNGG 4 cut(s) 203, 304, 586, 648
BseGI GGATG 2 cut(s) 167, 449
BseLI CCNNNNNNNGG 5 cut(s) 153, 209, 220, 431, 613
BseMII CTCAG 3 cut(s) 245, 264, 300
BseNI ACTGG 2 cut(s) 339, 640
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 2 cut(s) 139, 647
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 459
BseYI CCCAGC 1 cut(s) 196
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 3 cut(s) 109, 213, 366
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 3 cut(s) 61, 139, 239
BsiHKCI CYCGRG 1 cut(s) 732
BslFI GGGAC 2 cut(s) 179, 392
BslI CCNNNNNNNGG 5 cut(s) 153, 209, 220, 431, 613
BsmFI GGGAC 2 cut(s) 179, 392
BsnI GGCC 3 cut(s) 109, 213, 366
BsoBI CYCGRG 1 cut(s) 732
Bsp1286I GDGCHC 4 cut(s) 61, 139, 239, 647
Bsp143I GATC 1 cut(s) 509
Bsp19I CCATGG 2 cut(s) 203, 586
BspACI CCGC 8 cut(s) 126, 214, 282, 363, 432, 441, 479, 491
BspANI GGCC 3 cut(s) 109, 213, 366
BspCNI CTCAG 3 cut(s) 244, 263, 299
BspLI GGNNCC 3 cut(s) 115, 175, 436
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 4 cut(s) 272, 334, 467, 611
BspPI GGATC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 173
BsrFI RCCGGY 2 cut(s) 122, 578
BsrI ACTGG 2 cut(s) 339, 640
BssAI RCCGGY 2 cut(s) 122, 578
BssECI CCNNGG 4 cut(s) 203, 304, 586, 648
BssMI GATC 1 cut(s) 509
BssNI GRCGYC 2 cut(s) 192, 246
BssT1I CCWWGG 2 cut(s) 203, 586
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 2 cut(s) 103, 701
BstACI GRCGYC 2 cut(s) 192, 246
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 301, 532
BstDEI CTNAG 3 cut(s) 231, 250, 286
BstDSI CCRYGG 3 cut(s) 203, 304, 586
BstEII GGTNACC 2 cut(s) 37, 718
BstF5I GGATG 2 cut(s) 167, 449
BstH2I RGCGCY 2 cut(s) 312, 453
BstHHI GCGC 4 cut(s) 269, 311, 452, 464
BstKTI GATC 1 cut(s) 512
BstMBI GATC 1 cut(s) 509
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 5 cut(s) 65, 173, 438, 447, 497
BstNI CCWGG 1 cut(s) 650
BstNSI RCATGY 2 cut(s) 303, 696
BstPI GGTNACC 2 cut(s) 37, 718
BstSCI CCNGG 3 cut(s) 109, 152, 648
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 2 cut(s) 139, 647
BstV1I GCAGC 1 cut(s) 459
BstV2I GAAGAC 1 cut(s) 622
BstXI CCANNNNNNTGG 2 cut(s) 204, 311
BstZI CGGCCG 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 250
BsuRI GGCC 3 cut(s) 109, 213, 366
BtgI CCRYGG 3 cut(s) 203, 304, 586
BtsCI GGATG 2 cut(s) 167, 449
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 4 cut(s) 239, 270, 332, 647
BveI ACCTGC 4 cut(s) 272, 334, 467, 611
Cac8I GCNNGC 2 cut(s) 301, 532
CfoI GCGC 4 cut(s) 269, 311, 452, 464
Cfr10I RCCGGY 2 cut(s) 122, 578
Cfr13I GGNCC 3 cut(s) 108, 207, 704
CseI GACGC 2 cut(s) 254, 318
Csp6I GTAC 1 cut(s) 591
CviAII CATG 4 cut(s) 204, 300, 587, 693
CviQI GTAC 1 cut(s) 591
DdeI CTNAG 3 cut(s) 231, 250, 286
DpnI GATC 1 cut(s) 511
DpnII GATC 1 cut(s) 509
EaeI YGGCCR 2 cut(s) 211, 364
EagI CGGCCG 1 cut(s) 211
EciI GGCGGA 2 cut(s) 456, 506
Ecl136II GAGCTC 1 cut(s) 59
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 203, 586
Eco24I GRGCYC 1 cut(s) 61
Eco47I GGWCC 2 cut(s) 207, 704
Eco52I CGGCCG 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 732
Eco91I GGTNACC 2 cut(s) 37, 718
EcoICRI GAGCTC 1 cut(s) 59
EcoO65I GGTNACC 2 cut(s) 37, 718
EcoRII CCWGG 1 cut(s) 648
EcoT14I CCWWGG 2 cut(s) 203, 586
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 2 cut(s) 203, 586
FaeI CATG 4 cut(s) 207, 303, 590, 696
FaqI GGGAC 2 cut(s) 179, 392
FatI CATG 4 cut(s) 203, 299, 586, 692
Fnu4HI GCNGC 5 cut(s) 214, 283, 364, 433, 448
FokI GGATG 2 cut(s) 154, 456
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 5 cut(s) 214, 283, 364, 433, 448
FspBI CTAG 3 cut(s) 188, 350, 681
GlaI GCGC 4 cut(s) 268, 310, 451, 463
GluI GCNGC 5 cut(s) 214, 283, 364, 433, 448
GsaI CCCAGC 1 cut(s) 200
HaeII RGCGCY 2 cut(s) 312, 453
HaeIII GGCC 3 cut(s) 109, 213, 366
HgaI GACGC 2 cut(s) 254, 318
HhaI GCGC 4 cut(s) 269, 311, 452, 464
Hin1I GRCGYC 2 cut(s) 192, 246
Hin1II CATG 4 cut(s) 207, 303, 590, 696
Hin6I GCGC 4 cut(s) 267, 309, 450, 462
HinP1I GCGC 4 cut(s) 267, 309, 450, 462
HinfI GANTC 1 cut(s) 229
HphI GGTGA 3 cut(s) 31, 253, 414
Hpy166II GTNNAC 6 cut(s) 75, 81, 137, 261, 593, 704
Hpy188I TCNGA 3 cut(s) 228, 514, 612
Hpy188III TCNNGA 5 cut(s) 54, 82, 188, 252, 634
Hpy8I GTNNAC 6 cut(s) 75, 81, 137, 261, 593, 704
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 2 cut(s) 106, 697
HpyCH4III ACNGT 2 cut(s) 103, 701
HpyCH4IV ACGT 4 cut(s) 71, 77, 192, 405
HpyCH4V TGCA 6 cut(s) 137, 275, 317, 447, 534, 576
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 173, 438, 447, 497
HpyF3I CTNAG 3 cut(s) 231, 250, 286
HpySE526I ACGT 4 cut(s) 71, 77, 192, 405
Hsp92I GRCGYC 2 cut(s) 192, 246
Hsp92II CATG 4 cut(s) 207, 303, 590, 696
HspAI GCGC 4 cut(s) 267, 309, 450, 462
Kzo9I GATC 1 cut(s) 509
LmnI GCTCC 4 cut(s) 56, 205, 242, 440
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 2 cut(s) 176, 434
MaeI CTAG 3 cut(s) 188, 350, 681
MaeII ACGT 4 cut(s) 71, 77, 192, 405
MaeIII GTNAC 5 cut(s) 18, 37, 330, 695, 718
MalI GATC 1 cut(s) 511
MboI GATC 1 cut(s) 509
MboII GAAGA 1 cut(s) 622
MhlI GDGCHC 4 cut(s) 61, 139, 239, 647
MluCI AATT 2 cut(s) 318, 709
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 2 cut(s) 206, 635
MspR9I CCNGG 3 cut(s) 111, 154, 650
MvaI CCWGG 1 cut(s) 650
MwoI GCNNNNNNNGC 5 cut(s) 65, 173, 438, 447, 497
NciI CCSGG 2 cut(s) 111, 154
NcoI CCATGG 2 cut(s) 203, 586
NdeII GATC 1 cut(s) 509
NlaIII CATG 4 cut(s) 207, 303, 590, 696
NlaIV GGNNCC 3 cut(s) 115, 175, 436
NmuCI GTSAC 2 cut(s) 37, 330
NspI RCATGY 2 cut(s) 303, 696
PaeI GCATGC 1 cut(s) 303
PaeR7I CTCGAG 1 cut(s) 732
PaqCI CACCTGC 2 cut(s) 272, 334
PciI ACATGT 1 cut(s) 692
PcsI WCGNNNNNNNCGW 1 cut(s) 620
PkrI GCNGC 5 cut(s) 215, 284, 365, 434, 449
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PscI ACATGT 1 cut(s) 692
Psp124BI GAGCTC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 648
PspEI GGTNACC 2 cut(s) 37, 718
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 3 cut(s) 115, 175, 436
PspPI GGNCC 3 cut(s) 108, 207, 704
PspXI VCTCGAGB 1 cut(s) 732
PstI CTGCAG 1 cut(s) 277
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
SacI GAGCTC 1 cut(s) 61
SatI GCNGC 5 cut(s) 214, 283, 364, 433, 448
Sau3AI GATC 1 cut(s) 509
Sau96I GGNCC 3 cut(s) 108, 207, 704
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 3 cut(s) 111, 154, 650
SduI GDGCHC 4 cut(s) 61, 139, 239, 647
SfaNI GCATC 2 cut(s) 176, 434
SfcI CTRYAG 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 732
SgrAI CRCCGGYG 1 cut(s) 578
SinI GGWCC 2 cut(s) 207, 704
SlaI CTCGAG 1 cut(s) 732
SmlI CTYRAG 3 cut(s) 9, 426, 732
SmoI CTYRAG 3 cut(s) 9, 426, 732
SphI GCATGC 1 cut(s) 303
Sse9I AATT 2 cut(s) 318, 709
SsiI CCGC 8 cut(s) 126, 214, 282, 363, 432, 441, 479, 491
SspI AATATT 1 cut(s) 569
SspMI CTAG 3 cut(s) 188, 350, 681
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 3 cut(s) 109, 152, 648
StyI CCWWGG 2 cut(s) 203, 586
TaaI ACNGT 2 cut(s) 103, 701
TaiI ACGT 4 cut(s) 74, 80, 195, 408
TaqI TCGA 3 cut(s) 159, 623, 733
TasI AATT 2 cut(s) 318, 709
TauI GCSGC 4 cut(s) 216, 285, 366, 435
TscAI CASTG 4 cut(s) 239, 277, 339, 647
TseFI GTSAC 2 cut(s) 37, 330
TseI GCWGC 1 cut(s) 447
Tsp45I GTSAC 2 cut(s) 37, 330
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 4 cut(s) 239, 277, 339, 647
VneI GTGCAC 1 cut(s) 135
VpaK11BI GGWCC 2 cut(s) 207, 704
XbaI TCTAGA 1 cut(s) 187
XceI RCATGY 2 cut(s) 303, 696
XhoI CTCGAG 1 cut(s) 732
XspI CTAG 3 cut(s) 188, 350, 681
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.