Rh3CG293100

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000594
Physical Location & Seq
Reverse (-)
29851256 .. 29914525
63270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG293100.1

Sequence Viewer

Length: 744 bp
ATGATGAAAATCCAAGTGCTTCTCTACCTCACCTTCGCCTTCCTTTTCTTTCCAGGCGGACATCCGGCTACAATTTCTTTCACAAACAAGTGCAACTTCAAGGTCTGGCCAGCAACCCTAACTTCTGATAACAAACCTCAGTTAGCATTGACGGGGTTCGAGTTAGCACCCCAAGCTAGCAATTCCATAGACACTCCGGTTCCATGGAATGGCCGCTTCTGGGGCCGTACCAACTGCTTCACGGACAATTCAGGAATGTTCACTTGTGACAAACCAGGGGATTGCGCATCCGGTCAGGTCTCATGCAACGGAAAAGGAGGAATTCCGCCAGCCACTTTGGTGGAAATTAATATCCCAGCAGGTGGGGGTCAAGATTTCTATGATGTTAGTCTTGTTGACGGCTTCAACTTGCCCATCTCCGTAACCCCTCAAGGCGGTCACGCTCCCGGGGACTGTCGGAGCTCTAGCTGCAGCGCCAACGTGAACGCTATGTGTCCGAGTGAGCTACAAGTAACGGGGGCTGGCGGGAGCGTGGTTGGCTGCATGAGCGCGTGCTTGAAGTTCAATGAGCCCAAGTATTGCTGCACTCCACCTAATGACAAGCCAGAGACATGTCCTCCTACAGACTACTCTATGAAGTTTAGTCAACAATGCCCTGAGGCTTACAGCTACGCTTATGATGACAAGAAAGGCACATTCACTTGCTCCGGGGGACCTAACTACGCTATTACTTTCTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

247

Amino Acids

26.28

Weight (kDa)

5.09

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 247 2.4e-75 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
Acc16I TGCGCA 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 350
AccB7I CCANNNNNTGG 2 cut(s) 209, 362
AccII CGCG 1 cut(s) 551
AciI CCGC 5 cut(s) 57, 214, 326, 435, 525
AcoI YGGCCR 2 cut(s) 107, 211
AcsI RAATTY 1 cut(s) 321
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 4 cut(s) 209, 220, 362, 434
AflIII ACRYGT 1 cut(s) 611
AgsI TTSAA 4 cut(s) 100, 406, 559, 565
AjnI CCWGG 2 cut(s) 52, 274
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 5 cut(s) 176, 462, 468, 505, 669
AluI AGCT 5 cut(s) 176, 462, 468, 505, 669
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 2 cut(s) 304, 602
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 3 cut(s) 107, 211, 223
ApeKI GCWGC 4 cut(s) 468, 471, 540, 582
ApoI RAATTY 1 cut(s) 321
AseI ATTAAT 1 cut(s) 348
AspLEI GCGC 3 cut(s) 287, 476, 551
AspS9I GGNCC 2 cut(s) 223, 713
AsuC2I CCSGG 3 cut(s) 447, 448, 709
AsuHPI GGTGA 1 cut(s) 22
AsuNHI GCTAGC 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 713
AxyI CCTNAGG 1 cut(s) 657
BalI TGGCCA 1 cut(s) 109
BanII GRGCYC 2 cut(s) 464, 573
Bbv12I GWGCWC 1 cut(s) 464
BbvI GCAGC 4 cut(s) 455, 483, 527, 569
BccI CCATC 1 cut(s) 422
BceAI ACGGC 2 cut(s) 210, 415
BciT130I CCWGG 2 cut(s) 54, 276
BcnI CCSGG 3 cut(s) 447, 448, 709
BcoDI GTCTC 2 cut(s) 304, 602
BfaI CTAG 2 cut(s) 177, 465
BfmI CTRYAG 2 cut(s) 469, 621
BfoI RGCGCY 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 5 cut(s) 214, 469, 472, 541, 583
BlsI GCNGC 5 cut(s) 215, 470, 473, 542, 584
Bme1390I CCNGG 5 cut(s) 54, 276, 447, 448, 709
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 223, 713
BmiI GGNNCC 3 cut(s) 201, 224, 714
BmrFI CCNGG 5 cut(s) 54, 276, 447, 448, 709
BmsI GCATC 1 cut(s) 296
BmtI GCTAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 414
BpuMI CCSGG 3 cut(s) 447, 448, 709
BsaBI GATNNNNATC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 5 cut(s) 203, 275, 446, 447, 708
BsaWI WCCGGW 2 cut(s) 196, 290
BsaXI ACNNNNNCTCC 2 cut(s) 601, 631
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 220, 362, 434
Bse21I CCTNAGG 1 cut(s) 657
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 54, 276
BseDI CCNNGG 5 cut(s) 203, 275, 446, 447, 708
BseGI GGATG 2 cut(s) 61, 287
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 4 cut(s) 209, 220, 362, 434
BseMII CTCAG 2 cut(s) 152, 648
BseXI GCAGC 4 cut(s) 455, 483, 527, 569
BseYI CCCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 568
Bsh1236I CGCG 1 cut(s) 551
BshFI GGCC 3 cut(s) 109, 213, 225
BsiHKAI GWGCWC 1 cut(s) 464
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 5 cut(s) 65, 197, 291, 447, 708
BslFI GGGAC 2 cut(s) 464, 726
BslI CCNNNNNNNGG 4 cut(s) 209, 220, 362, 434
BsmAI GTCTC 2 cut(s) 304, 602
BsmFI GGGAC 2 cut(s) 464, 726
BsnI GGCC 3 cut(s) 109, 213, 225
Bso31I GGTCTC 1 cut(s) 304
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 464, 573
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 5 cut(s) 57, 214, 326, 435, 525
BspANI GGCC 3 cut(s) 109, 213, 225
BspCNI CTCAG 2 cut(s) 151, 649
BspFNI CGCG 1 cut(s) 551
BspLI GGNNCC 3 cut(s) 201, 224, 714
BspMAI CTGCAG 1 cut(s) 473
BspMI ACCTGC 1 cut(s) 350
BspOI GCTAGC 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 304
BssECI CCNNGG 5 cut(s) 203, 275, 446, 447, 708
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 2 cut(s) 54, 276
Bst4CI ACNGT 1 cut(s) 455
BstC8I GCNNGC 5 cut(s) 111, 178, 330, 523, 553
BstDEI CTNAG 2 cut(s) 138, 657
BstDSI CCRYGG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 61, 287
BstFNI CGCG 1 cut(s) 551
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 3 cut(s) 287, 476, 551
BstMAI GTCTC 2 cut(s) 304, 602
BstMWI GCNNNNNNNGC 5 cut(s) 173, 222, 468, 537, 546
BstNI CCWGG 2 cut(s) 54, 276
BstNSI RCATGY 1 cut(s) 615
BstSCI CCNGG 5 cut(s) 52, 274, 445, 446, 707
BstSFI CTRYAG 2 cut(s) 469, 621
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 4 cut(s) 455, 483, 527, 569
BstXI CCANNNNNNTGG 1 cut(s) 340
Bsu36I CCTNAGG 1 cut(s) 657
BsuRI GGCC 3 cut(s) 109, 213, 225
BtgI CCRYGG 1 cut(s) 203
BtsCI GGATG 2 cut(s) 61, 287
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 5 cut(s) 111, 178, 330, 523, 553
CfoI GCGC 3 cut(s) 287, 476, 551
Cfr13I GGNCC 2 cut(s) 223, 713
Cfr9I CCCGGG 1 cut(s) 446
Csp6I GTAC 1 cut(s) 228
CviAII CATG 4 cut(s) 204, 303, 544, 612
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 138, 657
EaeI YGGCCR 2 cut(s) 107, 211
EciI GGCGGA 2 cut(s) 72, 315
Ecl136II GAGCTC 1 cut(s) 462
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 2 cut(s) 464, 573
Eco31I GGTCTC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 713
Eco53kI GAGCTC 1 cut(s) 462
Eco81I CCTNAGG 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 713
EcoRI GAATTC 1 cut(s) 321
EcoRII CCWGG 2 cut(s) 52, 274
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 2 cut(s) 464, 573
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 4 cut(s) 207, 306, 547, 615
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 2 cut(s) 464, 726
FatI CATG 4 cut(s) 203, 302, 543, 611
FauI CCCGC 1 cut(s) 518
Fnu4HI GCNGC 5 cut(s) 214, 469, 472, 541, 583
FokI GGATG 2 cut(s) 48, 274
FriOI GRGCYC 2 cut(s) 464, 573
Fsp4HI GCNGC 5 cut(s) 214, 469, 472, 541, 583
FspBI CTAG 2 cut(s) 177, 465
FspI TGCGCA 1 cut(s) 286
GlaI GCGC 3 cut(s) 286, 475, 550
GluI GCNGC 5 cut(s) 214, 469, 472, 541, 583
GsaI CCCAGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 3 cut(s) 109, 213, 225
HapII CCGG 5 cut(s) 65, 197, 291, 447, 708
HhaI GCGC 3 cut(s) 287, 476, 551
Hin1II CATG 4 cut(s) 207, 306, 547, 615
Hin6I GCGC 3 cut(s) 285, 474, 549
HinP1I GCGC 3 cut(s) 285, 474, 549
HincII GTYRAC 2 cut(s) 397, 647
HindII GTYRAC 2 cut(s) 397, 647
HpaII CCGG 5 cut(s) 65, 197, 291, 447, 708
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 4 cut(s) 261, 397, 484, 647
Hpy188I TCNGA 3 cut(s) 127, 459, 498
Hpy188III TCNNGA 2 cut(s) 252, 371
Hpy8I GTNNAC 4 cut(s) 261, 397, 484, 647
HpyAV CCTTC 2 cut(s) 43, 49
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 5 cut(s) 93, 306, 471, 543, 585
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 222, 468, 537, 546
HpyF3I CTNAG 2 cut(s) 138, 657
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 4 cut(s) 207, 306, 547, 615
HspAI GCGC 3 cut(s) 285, 474, 549
LmnI GCTCC 4 cut(s) 448, 459, 528, 710
Lsp1109I GCAGC 4 cut(s) 455, 483, 527, 569
LweI GCATC 1 cut(s) 296
MaeI CTAG 2 cut(s) 177, 465
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 4 cut(s) 266, 421, 437, 511
MhlI GDGCHC 2 cut(s) 464, 573
MlsI TGGCCA 1 cut(s) 109
MluCI AATT 5 cut(s) 72, 181, 247, 321, 345
MluNI TGGCCA 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 6 cut(s) 38, 147, 311, 438, 627, 652
Mox20I TGGCCA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 109
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 109
MspI CCGG 5 cut(s) 65, 197, 291, 447, 708
MspR9I CCNGG 5 cut(s) 54, 276, 447, 448, 709
MvaI CCWGG 2 cut(s) 54, 276
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 5 cut(s) 173, 222, 468, 537, 546
NciI CCSGG 3 cut(s) 447, 448, 709
NcoI CCATGG 1 cut(s) 203
NheI GCTAGC 1 cut(s) 176
NlaIII CATG 4 cut(s) 207, 306, 547, 615
NlaIV GGNNCC 3 cut(s) 201, 224, 714
NmuCI GTSAC 2 cut(s) 266, 437
NsbI TGCGCA 1 cut(s) 286
NspI RCATGY 1 cut(s) 615
OliI CACNNNNGTG 1 cut(s) 338
PaqCI CACCTGC 1 cut(s) 350
PciI ACATGT 1 cut(s) 611
PflMI CCANNNNNTGG 2 cut(s) 209, 362
PkrI GCNGC 5 cut(s) 215, 470, 473, 542, 584
PpuMI RGGWCCY 1 cut(s) 713
PscI ACATGT 1 cut(s) 611
PshBI ATTAAT 1 cut(s) 348
Psp124BI GAGCTC 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 713
Psp6I CCWGG 2 cut(s) 52, 274
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 2 cut(s) 52, 274
PspN4I GGNNCC 3 cut(s) 201, 224, 714
PspPI GGNCC 2 cut(s) 223, 713
PspPPI RGGWCCY 1 cut(s) 713
PstI CTGCAG 1 cut(s) 473
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 338
SacI GAGCTC 1 cut(s) 464
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 5 cut(s) 214, 469, 472, 541, 583
Sau96I GGNCC 2 cut(s) 223, 713
ScrFI CCNGG 5 cut(s) 54, 276, 447, 448, 709
SduI GDGCHC 2 cut(s) 464, 573
SfaNI GCATC 1 cut(s) 296
SfcI CTRYAG 2 cut(s) 469, 621
SinI GGWCC 1 cut(s) 713
SmaI CCCGGG 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse9I AATT 5 cut(s) 72, 181, 247, 321, 345
SsiI CCGC 5 cut(s) 57, 214, 326, 435, 525
SspMI CTAG 2 cut(s) 177, 465
SstI GAGCTC 1 cut(s) 464
StyD4I CCNGG 5 cut(s) 52, 274, 445, 446, 707
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 1 cut(s) 483
TaqI TCGA 1 cut(s) 159
TasI AATT 5 cut(s) 72, 181, 247, 321, 345
TauI GCSGC 1 cut(s) 216
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseFI GTSAC 2 cut(s) 266, 437
TseI GCWGC 4 cut(s) 468, 471, 540, 582
Tsp45I GTSAC 2 cut(s) 266, 437
TspDTI ATGAA 2 cut(s) 20, 650
TspGWI ACGGA 3 cut(s) 257, 324, 409
TspMI CCCGGG 1 cut(s) 446
Van91I CCANNNNNTGG 2 cut(s) 209, 362
VpaK11BI GGWCC 1 cut(s) 713
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 1 cut(s) 321
XceI RCATGY 1 cut(s) 615
XmaI CCCGGG 1 cut(s) 446
XspI CTAG 2 cut(s) 177, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.