Rmu_sc0002956.1_g000002

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002956.1
OG0000594
Physical Location & Seq
Reverse (-)
1935 .. 2633
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002956.1_g000002.1.cds

Sequence Viewer

Length: 699 bp
atgcatgcaggcgcacatccggcaacaatttctttcacaaacaagtgcgccttcaaggtctggccagcaaccctaacttctgataaaaaacctcagttagcatcgacggggttcgagttagcaccccaagctagcaattccatagacactccggttccatggtctggccgcttctggggccgtaccaactgcttcacggacaatttaggaatgttcacttgtgacaaaccaggggattgcgcatccggtcaggtctcatgcaacggaaaaggaggaattccgccagccacgttggtggaaattaatatcccagcaggtgggggtcaagatttctacgatgttagtcttgttgacggcttcaacttgcccatctccgtaacccctcaaggcggtaacgctcccggggactgtcggagctctagctgcagcgccaacgtgaacgctatgtgtccgagtgagctacaagttacgggggctggcgggagcgtggttggctgcatgagcgcgtgcgtgaagttcaatgagcccaagtattgctgcactccacctaatgaaaagccagagacatgtcctcctacggactactctatgaagtttagtcaacaatgccctgaggcttacagctacgcttatgatgacaagaaaggcacattcacttgctccgggggacctaactacgctattactttctgcccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

232

Amino Acids

24.35

Weight (kDa)

5.11

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
Acc16I TGCGCA 1 cut(s) 241
Acc36I ACCTGC 1 cut(s) 305
AccB7I CCANNNNNTGG 2 cut(s) 164, 317
AccII CGCG 1 cut(s) 506
AciI CCGC 4 cut(s) 169, 281, 390, 480
AcoI YGGCCR 2 cut(s) 62, 166
AcsI RAATTY 1 cut(s) 276
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 4 cut(s) 164, 175, 317, 389
AflIII ACRYGT 1 cut(s) 566
AgsI TTSAA 3 cut(s) 55, 361, 520
AjnI CCWGG 1 cut(s) 229
AleI CACNNNNGTG 1 cut(s) 293
AluBI AGCT 5 cut(s) 131, 417, 423, 460, 624
AluI AGCT 5 cut(s) 131, 417, 423, 460, 624
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 2 cut(s) 259, 557
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 3 cut(s) 62, 166, 178
ApeKI GCWGC 4 cut(s) 423, 426, 495, 537
ApoI RAATTY 1 cut(s) 276
AseI ATTAAT 1 cut(s) 303
AspLEI GCGC 5 cut(s) 14, 50, 242, 431, 506
AspS9I GGNCC 2 cut(s) 178, 668
AsuC2I CCSGG 3 cut(s) 402, 403, 664
AsuNHI GCTAGC 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 1 cut(s) 668
AxyI CCTNAGG 1 cut(s) 612
BalI TGGCCA 1 cut(s) 64
BanII GRGCYC 2 cut(s) 419, 528
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 4 cut(s) 410, 438, 482, 524
BccI CCATC 1 cut(s) 377
BceAI ACGGC 2 cut(s) 165, 370
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 3 cut(s) 402, 403, 664
BcoDI GTCTC 2 cut(s) 259, 557
BfaI CTAG 2 cut(s) 132, 420
BfmI CTRYAG 1 cut(s) 424
BfoI RGCGCY 1 cut(s) 432
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 5 cut(s) 169, 424, 427, 496, 538
BlsI GCNGC 5 cut(s) 170, 425, 428, 497, 539
Bme1390I CCNGG 4 cut(s) 231, 402, 403, 664
Bme18I GGWCC 1 cut(s) 668
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 178, 668
BmiI GGNNCC 3 cut(s) 156, 179, 669
BmrFI CCNGG 4 cut(s) 231, 402, 403, 664
BmsI GCATC 2 cut(s) 110, 251
BmtI GCTAGC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 369
BpuMI CCSGG 3 cut(s) 402, 403, 664
BsaI GGTCTC 1 cut(s) 259
BsaJI CCNNGG 5 cut(s) 158, 230, 401, 402, 663
BsaWI WCCGGW 2 cut(s) 151, 245
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 4 cut(s) 164, 175, 317, 389
Bse21I CCTNAGG 1 cut(s) 612
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 5 cut(s) 158, 230, 401, 402, 663
BseGI GGATG 2 cut(s) 16, 242
BseLI CCNNNNNNNGG 4 cut(s) 164, 175, 317, 389
BseMII CTCAG 2 cut(s) 107, 603
BseXI GCAGC 4 cut(s) 410, 438, 482, 524
BseYI CCCAGC 1 cut(s) 310
BsgI GTGCAG 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 3 cut(s) 64, 168, 180
BsiHKAI GWGCWC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 5 cut(s) 20, 152, 246, 402, 663
BslFI GGGAC 2 cut(s) 419, 681
BslI CCNNNNNNNGG 4 cut(s) 164, 175, 317, 389
BsmAI GTCTC 2 cut(s) 259, 557
BsmFI GGGAC 2 cut(s) 419, 681
BsnI GGCC 3 cut(s) 64, 168, 180
Bso31I GGTCTC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 419, 528
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 4 cut(s) 169, 281, 390, 480
BspANI GGCC 3 cut(s) 64, 168, 180
BspCNI CTCAG 2 cut(s) 106, 604
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 3 cut(s) 156, 179, 669
BspMAI CTGCAG 1 cut(s) 428
BspMI ACCTGC 1 cut(s) 305
BspOI GCTAGC 1 cut(s) 135
BspTNI GGTCTC 1 cut(s) 259
BssECI CCNNGG 5 cut(s) 158, 230, 401, 402, 663
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 410
BstC8I GCNNGC 7 cut(s) 6, 10, 66, 133, 285, 478, 508
BstDEI CTNAG 2 cut(s) 93, 612
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 16, 242
BstFNI CGCG 1 cut(s) 506
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 5 cut(s) 14, 50, 242, 431, 506
BstMAI GTCTC 2 cut(s) 259, 557
BstMWI GCNNNNNNNGC 6 cut(s) 20, 128, 177, 423, 492, 501
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 2 cut(s) 8, 570
BstSCI CCNGG 4 cut(s) 229, 400, 401, 662
BstSFI CTRYAG 1 cut(s) 424
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 4 cut(s) 410, 438, 482, 524
BstXI CCANNNNNNTGG 1 cut(s) 295
Bsu36I CCTNAGG 1 cut(s) 612
BsuRI GGCC 3 cut(s) 64, 168, 180
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 2 cut(s) 16, 242
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 7 cut(s) 6, 10, 66, 133, 285, 478, 508
CfoI GCGC 5 cut(s) 14, 50, 242, 431, 506
Cfr13I GGNCC 2 cut(s) 178, 668
Cfr9I CCCGGG 1 cut(s) 401
Csp6I GTAC 1 cut(s) 183
CviAII CATG 5 cut(s) 5, 159, 258, 499, 567
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 2 cut(s) 93, 612
EaeI YGGCCR 2 cut(s) 62, 166
EciI GGCGGA 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 158
Eco24I GRGCYC 2 cut(s) 419, 528
Eco31I GGTCTC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 668
Eco53kI GAGCTC 1 cut(s) 417
Eco81I CCTNAGG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 668
EcoRI GAATTC 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 419, 528
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 5 cut(s) 8, 162, 261, 502, 570
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 2 cut(s) 419, 681
FatI CATG 5 cut(s) 4, 158, 257, 498, 566
FauI CCCGC 1 cut(s) 473
Fnu4HI GCNGC 5 cut(s) 169, 424, 427, 496, 538
FokI GGATG 2 cut(s) 3, 229
FriOI GRGCYC 2 cut(s) 419, 528
Fsp4HI GCNGC 5 cut(s) 169, 424, 427, 496, 538
FspBI CTAG 2 cut(s) 132, 420
FspI TGCGCA 1 cut(s) 241
GlaI GCGC 5 cut(s) 13, 49, 241, 430, 505
GluI GCNGC 5 cut(s) 169, 424, 427, 496, 538
GsaI CCCAGC 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 3 cut(s) 64, 168, 180
HapII CCGG 5 cut(s) 20, 152, 246, 402, 663
HhaI GCGC 5 cut(s) 14, 50, 242, 431, 506
Hin1II CATG 5 cut(s) 8, 162, 261, 502, 570
Hin6I GCGC 5 cut(s) 12, 48, 240, 429, 504
HinP1I GCGC 5 cut(s) 12, 48, 240, 429, 504
HincII GTYRAC 2 cut(s) 352, 602
HindII GTYRAC 2 cut(s) 352, 602
HpaII CCGG 5 cut(s) 20, 152, 246, 402, 663
Hpy166II GTNNAC 4 cut(s) 216, 352, 439, 602
Hpy188I TCNGA 3 cut(s) 82, 414, 453
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 4 cut(s) 216, 352, 439, 602
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 2 cut(s) 290, 435
HpyCH4V TGCA 6 cut(s) 4, 8, 261, 426, 498, 540
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 128, 177, 423, 492, 501
HpyF3I CTNAG 2 cut(s) 93, 612
HpySE526I ACGT 2 cut(s) 290, 435
Hsp92II CATG 5 cut(s) 8, 162, 261, 502, 570
HspAI GCGC 5 cut(s) 12, 48, 240, 429, 504
LmnI GCTCC 4 cut(s) 403, 414, 483, 665
Lsp1109I GCAGC 4 cut(s) 410, 438, 482, 524
LweI GCATC 2 cut(s) 110, 251
MaeI CTAG 2 cut(s) 132, 420
MaeII ACGT 2 cut(s) 290, 435
MaeIII GTNAC 4 cut(s) 221, 376, 392, 466
MhlI GDGCHC 2 cut(s) 419, 528
MlsI TGGCCA 1 cut(s) 64
MluCI AATT 5 cut(s) 27, 136, 202, 276, 300
MluNI TGGCCA 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 5 cut(s) 102, 266, 393, 582, 607
Mox20I TGGCCA 1 cut(s) 64
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 64
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 64
MspI CCGG 5 cut(s) 20, 152, 246, 402, 663
MspR9I CCNGG 4 cut(s) 231, 402, 403, 664
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 6 cut(s) 20, 128, 177, 423, 492, 501
NciI CCSGG 3 cut(s) 402, 403, 664
NcoI CCATGG 1 cut(s) 158
NheI GCTAGC 1 cut(s) 131
NlaIII CATG 5 cut(s) 8, 162, 261, 502, 570
NlaIV GGNNCC 3 cut(s) 156, 179, 669
NmuCI GTSAC 1 cut(s) 221
NsbI TGCGCA 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 570
OliI CACNNNNGTG 1 cut(s) 293
PaeI GCATGC 1 cut(s) 8
PaqCI CACCTGC 1 cut(s) 305
PciI ACATGT 1 cut(s) 566
PflMI CCANNNNNTGG 2 cut(s) 164, 317
PkrI GCNGC 5 cut(s) 170, 425, 428, 497, 539
PpuMI RGGWCCY 1 cut(s) 668
PscI ACATGT 1 cut(s) 566
PshBI ATTAAT 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 310
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 3 cut(s) 156, 179, 669
PspPI GGNCC 2 cut(s) 178, 668
PspPPI RGGWCCY 1 cut(s) 668
PstI CTGCAG 1 cut(s) 428
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 5 cut(s) 169, 424, 427, 496, 538
Sau96I GGNCC 2 cut(s) 178, 668
ScrFI CCNGG 4 cut(s) 231, 402, 403, 664
SduI GDGCHC 2 cut(s) 419, 528
SfaNI GCATC 2 cut(s) 110, 251
SfcI CTRYAG 1 cut(s) 424
SinI GGWCC 1 cut(s) 668
SmaI CCCGGG 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
SphI GCATGC 1 cut(s) 8
Sse9I AATT 5 cut(s) 27, 136, 202, 276, 300
SsiI CCGC 4 cut(s) 169, 281, 390, 480
SspMI CTAG 2 cut(s) 132, 420
SstI GAGCTC 1 cut(s) 419
StyD4I CCNGG 4 cut(s) 229, 400, 401, 662
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 2 cut(s) 293, 438
TaqI TCGA 2 cut(s) 104, 114
TasI AATT 5 cut(s) 27, 136, 202, 276, 300
TauI GCSGC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 4 cut(s) 423, 426, 495, 537
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 567, 605
TspGWI ACGGA 4 cut(s) 212, 279, 364, 593
TspMI CCCGGG 1 cut(s) 401
Van91I CCANNNNNTGG 2 cut(s) 164, 317
VpaK11BI GGWCC 1 cut(s) 668
VspI ATTAAT 1 cut(s) 303
XapI RAATTY 1 cut(s) 276
XceI RCATGY 2 cut(s) 8, 570
XmaI CCCGGG 1 cut(s) 401
XspI CTAG 2 cut(s) 132, 420
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.