Rroxscaffold_6G00410340

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000594
Physical Location & Seq
Reverse (-)
32790035 .. 32791411
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410340.1

Sequence Viewer

Length: 741 bp
ATGAAGATGAACACCCAAGTACTCCTCAGCCTCACCTTGGCCATATTCTTCGCAGGTGCACATGCGGCTACGATCACCTTCACCAACAACTGCCCCTACACCGTATGGCCAGGAACCCTCACCTCCGACCAACAACCCCAACTATCCACCACCGGCTTCGAGCTAGCACAGGGAGCCAAAAAAGACGTCACCACTCCAGTTCCATGGAAAGGCCGCTTCTGGGCCCGAACCAGATGCTCCACCGCTGCCGACGGAAAGTTCTCCTGCGCCACTGCTGACTGCGGCTCCGGCCAGGTCACATGCAACGGCAACGGCGCAGTCCCACCGGCAACTCTAGTCGAAATCAACATCGCAGCTGACGGCGGTCAGGACTTCTACGACGTCAGCCTGGTCGACGGCTTCAACTTGCCCATGTCCGTGGCTCCGCAGGGTGGAACCGGCGAATGCAAGCCCTCTTCATGCCAGGCCGACGTGAACGCCGTCTGTCCTCCGGAGCTGCAAGTGAAGGCCGACGACGGGACCGTGATTGCCTGCAAGAGCGCTTGTGTGGCGTTCAACGAGCCAAAGTACTGTTGCACACCTCCCAATGACACTCCCGAAACGTGTCCTCCCACAAACTACTCTCAGATCTTTGAGGAACAGTGCCCTCAGGCTTATAGCTACGCTTACGATGACCAGAACAGCACGTTTACATGCTTCGGTGGACCTAACTACGCCATTACATTCTGTCCGGCCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

246

Amino Acids

26.0

Weight (kDa)

4.37

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 244 5.8e-80 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
AatII GACGTC 2 cut(s) 189, 384
Acc36I ACCTGC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 393
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 7 cut(s) 65, 214, 243, 282, 363, 425, 735
AcoI YGGCCR 4 cut(s) 39, 107, 289, 732
AcyI GRCGYC 2 cut(s) 186, 381
AfaI GTAC 2 cut(s) 21, 569
AfeI AGCGCT 1 cut(s) 541
AfiI CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
AflIII ACRYGT 1 cut(s) 602
AgsI TTSAA 2 cut(s) 403, 556
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 4 cut(s) 109, 291, 387, 462
AluBI AGCT 4 cut(s) 163, 356, 496, 660
AluI AGCT 4 cut(s) 163, 356, 496, 660
Alw21I GWGCWC 1 cut(s) 61
Alw44I GTGCAC 1 cut(s) 57
Aor13HI TCCGGA 1 cut(s) 490
Aor51HI AGCGCT 1 cut(s) 541
AoxI GGCC 8 cut(s) 39, 107, 211, 222, 289, 465, 507, 732
ApaI GGGCCC 1 cut(s) 226
ApaLI GTGCAC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 245, 353, 496
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 3 cut(s) 269, 317, 542
AspS9I GGNCC 4 cut(s) 222, 223, 519, 704
AsuHPI GGTGA 5 cut(s) 25, 67, 73, 112, 181
AsuNHI GCTAGC 1 cut(s) 163
AvaII GGWCC 2 cut(s) 519, 704
AxyI CCTNAGG 1 cut(s) 648
BaeGI GKGCMC 3 cut(s) 61, 226, 647
BalI TGGCCA 2 cut(s) 41, 109
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 61
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 3 cut(s) 232, 365, 483
BceAI ACGGC 5 cut(s) 322, 328, 376, 412, 464
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 4 cut(s) 111, 293, 389, 464
BfaI CTAG 2 cut(s) 164, 335
BfoI RGCGCY 1 cut(s) 543
BfuAI ACCTGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 627
BisI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 735
BlsI GCNGC 7 cut(s) 67, 215, 247, 284, 355, 498, 736
BmcAI AGTACT 2 cut(s) 21, 569
Bme1390I CCNGG 4 cut(s) 111, 293, 389, 464
Bme18I GGWCC 2 cut(s) 519, 704
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 4 cut(s) 222, 223, 519, 704
BmiI GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
BmrFI CCNGG 4 cut(s) 111, 293, 389, 464
BmsI GCATC 1 cut(s) 224
BmtI GCTAGC 1 cut(s) 167
BoxI GACNNNNGTC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 26
BsaHI GRCGYC 2 cut(s) 186, 381
BsaJI CCNNGG 3 cut(s) 36, 203, 417
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 4 cut(s) 269, 299, 592, 622
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
Bse118I RCCGGY 3 cut(s) 152, 325, 437
Bse1I ACTGG 1 cut(s) 197
Bse21I CCTNAGG 1 cut(s) 648
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 4 cut(s) 111, 293, 389, 464
BseDI CCNNGG 3 cut(s) 36, 203, 417
BseLI CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
BseMII CTCAG 3 cut(s) 40, 638, 662
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 14
BseSI GKGCMC 3 cut(s) 61, 226, 647
BseX3I CGGCCG 1 cut(s) 732
BseXI GCAGC 3 cut(s) 232, 365, 483
Bsh1285I CGRYCG 1 cut(s) 735
BshFI GGCC 8 cut(s) 41, 109, 213, 224, 291, 467, 509, 734
BsiEI CGRYCG 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 6 cut(s) 153, 288, 326, 438, 491, 731
BslFI GGGAC 2 cut(s) 305, 532
BslI CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
BsmFI GGGAC 2 cut(s) 305, 532
BsmI GAATGC 1 cut(s) 449
BsnI GGCC 8 cut(s) 41, 109, 213, 224, 291, 467, 509, 734
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 3 cut(s) 61, 226, 647
Bsp13I TCCGGA 1 cut(s) 490
Bsp143I GATC 2 cut(s) 72, 627
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 7 cut(s) 65, 214, 243, 282, 363, 425, 735
BspANI GGCC 8 cut(s) 41, 109, 213, 224, 291, 467, 509, 734
BspCNI CTCAG 3 cut(s) 39, 637, 661
BspEI TCCGGA 1 cut(s) 490
BspLI GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
BspMI ACCTGC 1 cut(s) 44
BspOI GCTAGC 1 cut(s) 167
BsrFI RCCGGY 3 cut(s) 152, 325, 437
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 3 cut(s) 152, 325, 437
BssECI CCNNGG 3 cut(s) 36, 203, 417
BssMI GATC 2 cut(s) 72, 627
BssNI GRCGYC 2 cut(s) 186, 381
BssT1I CCWWGG 2 cut(s) 36, 203
Bst2UI CCWGG 4 cut(s) 111, 293, 389, 464
Bst4CI ACNGT 4 cut(s) 103, 523, 572, 642
Bst6I CTCTTC 1 cut(s) 460
BstACI GRCGYC 2 cut(s) 186, 381
BstC8I GCNNGC 3 cut(s) 165, 449, 532
BstDEI CTNAG 3 cut(s) 26, 624, 648
BstDSI CCRYGG 2 cut(s) 203, 417
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 3 cut(s) 269, 317, 542
BstKTI GATC 2 cut(s) 75, 630
BstMBI GATC 2 cut(s) 72, 627
BstMCI CGRYCG 1 cut(s) 735
BstMWI GCNNNNNNNGC 4 cut(s) 65, 173, 288, 548
BstNI CCWGG 4 cut(s) 111, 293, 389, 464
BstNSI RCATGY 3 cut(s) 65, 303, 696
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 4 cut(s) 109, 291, 387, 462
BstSLI GKGCMC 3 cut(s) 61, 226, 647
BstV1I GCAGC 3 cut(s) 232, 365, 483
BstX2I RGATCY 1 cut(s) 627
BstXI CCANNNNNNTGG 2 cut(s) 204, 418
BstYI RGATCY 1 cut(s) 627
BstZI CGGCCG 1 cut(s) 732
Bsu36I CCTNAGG 1 cut(s) 648
BsuRI GGCC 8 cut(s) 41, 109, 213, 224, 291, 467, 509, 734
BtgI CCRYGG 2 cut(s) 203, 417
BtgZI GCGATG 1 cut(s) 334
BtrI CACGTC 1 cut(s) 472
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 647
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 3 cut(s) 165, 449, 532
CfoI GCGC 3 cut(s) 269, 317, 542
Cfr10I RCCGGY 3 cut(s) 152, 325, 437
Cfr13I GGNCC 4 cut(s) 222, 223, 519, 704
Csp6I GTAC 2 cut(s) 20, 568
CviAII CATG 7 cut(s) 62, 204, 300, 412, 459, 693, 738
CviQI GTAC 2 cut(s) 20, 568
DdeI CTNAG 3 cut(s) 26, 624, 648
DpnI GATC 2 cut(s) 74, 629
DpnII GATC 2 cut(s) 72, 627
EaeI YGGCCR 4 cut(s) 39, 107, 289, 732
EagI CGGCCG 1 cut(s) 732
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
EclXI CGGCCG 1 cut(s) 732
Eco130I CCWWGG 2 cut(s) 36, 203
Eco24I GRGCYC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 519, 704
Eco47III AGCGCT 1 cut(s) 541
Eco52I CGGCCG 1 cut(s) 732
Eco81I CCTNAGG 1 cut(s) 648
EcoRII CCWGG 4 cut(s) 109, 291, 387, 462
EcoT14I CCWWGG 2 cut(s) 36, 203
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 2 cut(s) 36, 203
FaeI CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 741
FaqI GGGAC 2 cut(s) 305, 532
FatI CATG 7 cut(s) 61, 203, 299, 411, 458, 692, 737
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 735
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 735
FspBI CTAG 2 cut(s) 164, 335
GlaI GCGC 3 cut(s) 268, 316, 541
GluI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 735
GsuI CTGGAG 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 8 cut(s) 41, 109, 213, 224, 291, 467, 509, 734
HapII CCGG 6 cut(s) 153, 288, 326, 438, 491, 731
HhaI GCGC 3 cut(s) 269, 317, 542
Hin1I GRCGYC 2 cut(s) 186, 381
Hin1II CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 741
Hin6I GCGC 3 cut(s) 267, 315, 540
HinP1I GCGC 3 cut(s) 267, 315, 540
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HpaII CCGG 6 cut(s) 153, 288, 326, 438, 491, 731
HphI GGTGA 5 cut(s) 25, 67, 73, 112, 181
Hpy166II GTNNAC 5 cut(s) 59, 394, 475, 690, 704
Hpy188I TCNGA 2 cut(s) 127, 627
Hpy188III TCNNGA 3 cut(s) 368, 491, 596
Hpy8I GTNNAC 5 cut(s) 59, 394, 475, 690, 704
Hpy99I CGWCG 6 cut(s) 254, 383, 398, 473, 515, 518
HpyAV CCTTC 2 cut(s) 88, 499
HpyCH4III ACNGT 4 cut(s) 103, 523, 572, 642
HpyCH4IV ACGT 5 cut(s) 186, 381, 471, 602, 686
HpyCH4V TGCA 6 cut(s) 59, 303, 447, 499, 534, 576
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 173, 288, 548
HpyF3I CTNAG 3 cut(s) 26, 624, 648
HpySE526I ACGT 5 cut(s) 186, 381, 471, 602, 686
Hsp92I GRCGYC 2 cut(s) 186, 381
Hsp92II CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 741
HspAI GCGC 3 cut(s) 267, 315, 540
Kpn2I TCCGGA 1 cut(s) 490
Kzo9I GATC 2 cut(s) 72, 627
LmnI GCTCC 5 cut(s) 173, 242, 290, 427, 493
Lsp1109I GCAGC 3 cut(s) 232, 365, 483
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 164, 335
MaeII ACGT 5 cut(s) 186, 381, 471, 602, 686
MaeIII GTNAC 2 cut(s) 187, 295
MalI GATC 2 cut(s) 74, 629
MboI GATC 2 cut(s) 72, 627
MboII GAAGA 3 cut(s) 16, 40, 447
MflI RGATCY 1 cut(s) 627
MhlI GDGCHC 3 cut(s) 61, 226, 647
MlsI TGGCCA 2 cut(s) 41, 109
MluNI TGGCCA 2 cut(s) 41, 109
MmeI TCCRAC 1 cut(s) 150
Mox20I TGGCCA 2 cut(s) 41, 109
MroI TCCGGA 1 cut(s) 490
MscI TGGCCA 2 cut(s) 41, 109
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 2 cut(s) 41, 109
MspA1I CMGCKG 2 cut(s) 245, 356
MspI CCGG 6 cut(s) 153, 288, 326, 438, 491, 731
MspR9I CCNGG 4 cut(s) 111, 293, 389, 464
Mva1269I GAATGC 1 cut(s) 449
MvaI CCWGG 4 cut(s) 111, 293, 389, 464
MwoI GCNNNNNNNGC 4 cut(s) 65, 173, 288, 548
NcoI CCATGG 1 cut(s) 203
NdeII GATC 2 cut(s) 72, 627
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 741
NlaIV GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
NmuCI GTSAC 2 cut(s) 187, 295
NspI RCATGY 3 cut(s) 65, 303, 696
PaqCI CACCTGC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 2 cut(s) 477, 519
PctI GAATGC 1 cut(s) 449
PkrI GCNGC 7 cut(s) 67, 215, 247, 284, 355, 498, 736
PshAI GACNNNNGTC 1 cut(s) 363
Psp6I CCWGG 4 cut(s) 109, 291, 387, 462
PspGI CCWGG 4 cut(s) 109, 291, 387, 462
PspN4I GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 4 cut(s) 222, 223, 519, 704
PsuI RGATCY 1 cut(s) 627
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 2 cut(s) 21, 569
RsaNI GTAC 2 cut(s) 20, 568
RseI CAYNNNNRTG 1 cut(s) 416
SalI GTCGAC 1 cut(s) 392
SatI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 735
Sau3AI GATC 2 cut(s) 72, 627
Sau96I GGNCC 4 cut(s) 222, 223, 519, 704
ScaI AGTACT 2 cut(s) 21, 569
ScrFI CCNGG 4 cut(s) 111, 293, 389, 464
SduI GDGCHC 3 cut(s) 61, 226, 647
SfaNI GCATC 1 cut(s) 224
SinI GGWCC 2 cut(s) 519, 704
SmiMI CAYNNNNRTG 1 cut(s) 416
SsiI CCGC 7 cut(s) 65, 214, 243, 282, 363, 425, 735
SspMI CTAG 2 cut(s) 164, 335
StyD4I CCNGG 4 cut(s) 109, 291, 387, 462
StyI CCWWGG 2 cut(s) 36, 203
TaaI ACNGT 4 cut(s) 103, 523, 572, 642
TaiI ACGT 5 cut(s) 189, 384, 474, 605, 689
TaqI TCGA 3 cut(s) 159, 339, 393
TatI WGTACW 2 cut(s) 19, 567
TauI GCSGC 4 cut(s) 68, 216, 285, 737
TscAI CASTG 2 cut(s) 277, 647
TseFI GTSAC 2 cut(s) 187, 295
TseI GCWGC 3 cut(s) 245, 353, 496
Tsp45I GTSAC 2 cut(s) 187, 295
TspDTI ATGAA 3 cut(s) 17, 23, 447
TspGWI ACGGA 2 cut(s) 267, 406
TspRI CASTG 2 cut(s) 277, 647
VneI GTGCAC 1 cut(s) 57
VpaK11BI GGWCC 2 cut(s) 519, 704
XceI RCATGY 3 cut(s) 65, 303, 696
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 2 cut(s) 164, 335
ZraI GACGTC 2 cut(s) 187, 382
ZrmI AGTACT 2 cut(s) 21, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.