Rmu_sc0011148.1_g000008

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011148.1
OG0000594
Physical Location & Seq
Reverse (-)
13946 .. 15860
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011148.1_g000008.1.cds

Sequence Viewer

Length: 843 bp
atggataagatattccgacacaatggcatcttgataccgccaggaacaaattctaaggaatcaaaaaagcggaacaattggatttatgtccaatggatcacacccaccaagaaaaagtattttgttttggttcgacccgtaatcatatatgaaattgcggacggggctcagtcggctacattcactttcacgaacaaatgccctttcacagtttggcccggaaccctaaccggcggtggcggtgcacaactatcctcaaccgggttcgagttagcatccggtgcctcctcaactctagatgtccctgccccatggtccggccgcttctggggccggactcagtgctccacagactcattgggaaagttcacctgcgccaccgcagactgcggctcaggtcaagtcgcatgcaacggcgctggtgcaattccaccggcgtcgctggtggaactgaccctagcagcgaacggcggccaagacttctatgatattagtctggttgatggcttcaacgtgcctgttcaactggttccacaaggtggctccggtgggtgcagtgccacgagctgcgccgccaatgtcaattcagtttgtcccgcagagttggctgtgaagggatcagatggcagtgtgattgcttgtaaaagtgcgtgtttggtttttaatcagcctcagtactgttgcaccggcgaccatggtactccgcaaacctgccctccgactgattattcgaagatcttcaagaaccagtgcccccaggcttatagttatgcttatgatgataagtctagcattttcacatgtaacggtggagctaattatgtgattactttttgtccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

280

Amino Acids

29.47

Weight (kDa)

7.35

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 380
Acc36I ACCTGC 2 cut(s) 380, 719
AccB1I GGYRCC 1 cut(s) 281
AccB7I CCANNNNNTGG 1 cut(s) 539
AclWI GGATC 2 cut(s) 104, 625
AcoI YGGCCR 2 cut(s) 319, 472
AcsI RAATTY 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 437
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 2 cut(s) 677, 700
AfiI CCNNNNNNNGG 4 cut(s) 261, 317, 328, 539
AflIII ACRYGT 1 cut(s) 800
AgsI TTSAA 3 cut(s) 511, 524, 742
AjnI CCWGG 2 cut(s) 40, 756
AluBI AGCT 2 cut(s) 567, 815
AluI AGCT 2 cut(s) 567, 815
Alw21I GWGCWC 2 cut(s) 247, 347
Alw44I GTGCAC 1 cut(s) 243
AlwI GGATC 2 cut(s) 104, 625
AoxI GGCC 4 cut(s) 215, 319, 331, 472
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 461, 567
ApoI RAATTY 1 cut(s) 49
ArsI GACNNNNNNTTYG 2 cut(s) 712, 744
Asp700I GAANNNNTTC 2 cut(s) 49, 737
AspLEI GCGC 3 cut(s) 377, 419, 572
AspS9I GGNCC 3 cut(s) 216, 315, 331
AsuC2I CCSGG 2 cut(s) 219, 262
AsuHPI GGTGA 1 cut(s) 361
AsuII TTCGAA 1 cut(s) 731
AvaII GGWCC 1 cut(s) 315
BaeGI GKGCMC 2 cut(s) 247, 755
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 169
BauI CACGAG 1 cut(s) 562
Bbv12I GWGCWC 2 cut(s) 247, 347
BbvI GCAGC 2 cut(s) 473, 554
BccI CCATC 2 cut(s) 497, 617
BceAI ACGGC 2 cut(s) 430, 484
BciT130I CCWGG 2 cut(s) 42, 758
BcnI CCSGG 2 cut(s) 219, 262
BfaI CTAG 3 cut(s) 296, 458, 789
BfoI RGCGCY 1 cut(s) 420
BfuAI ACCTGC 2 cut(s) 380, 719
BglII AGATCT 1 cut(s) 735
BisI GCNGC 6 cut(s) 322, 391, 462, 472, 568, 573
BlsI GCNGC 6 cut(s) 323, 392, 463, 473, 569, 574
BmcAI AGTACT 1 cut(s) 677
Bme1390I CCNGG 4 cut(s) 42, 219, 262, 758
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 3 cut(s) 216, 315, 331
BmiI GGNNCC 5 cut(s) 223, 283, 332, 531, 544
BmrFI CCNGG 4 cut(s) 42, 219, 262, 758
BmsI GCATC 2 cut(s) 36, 284
Bpu10I CCTNAGC 1 cut(s) 394
Bpu14I TTCGAA 1 cut(s) 731
BpuMI CCSGG 2 cut(s) 219, 262
BsaHI GRCGYC 1 cut(s) 437
BsaJI CCNNGG 3 cut(s) 311, 694, 756
BsaWI WCCGGW 2 cut(s) 278, 545
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 4 cut(s) 261, 317, 328, 539
Bse118I RCCGGY 3 cut(s) 230, 433, 686
Bse1I ACTGG 2 cut(s) 531, 748
BseBI CCWGG 2 cut(s) 42, 758
BseDI CCNNGG 3 cut(s) 311, 694, 756
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 4 cut(s) 261, 317, 328, 539
BseMII CTCAG 4 cut(s) 182, 353, 408, 686
BseNI ACTGG 2 cut(s) 531, 748
BseRI GAGGAG 1 cut(s) 277
BseSI GKGCMC 2 cut(s) 247, 755
BseX3I CGGCCG 1 cut(s) 319
BseXI GCAGC 2 cut(s) 473, 554
BsgI GTGCAG 1 cut(s) 574
Bsh1285I CGRYCG 1 cut(s) 322
BshFI GGCC 4 cut(s) 217, 321, 333, 474
BshNI GGYRCC 1 cut(s) 281
BsiEI CGRYCG 1 cut(s) 322
BsiHKAI GWGCWC 2 cut(s) 247, 347
BsiSI CCGG 9 cut(s) 219, 231, 261, 279, 318, 334, 434, 546, 687
BslFI GGGAC 2 cut(s) 287, 579
BslI CCNNNNNNNGG 4 cut(s) 261, 317, 328, 539
BsmFI GGGAC 2 cut(s) 287, 579
BsnI GGCC 4 cut(s) 217, 321, 333, 474
Bsp119I TTCGAA 1 cut(s) 731
Bsp1286I GDGCHC 4 cut(s) 169, 247, 347, 755
Bsp143I GATC 3 cut(s) 96, 617, 735
Bsp19I CCATGG 2 cut(s) 311, 694
BspANI GGCC 4 cut(s) 217, 321, 333, 474
BspCNI CTCAG 4 cut(s) 181, 352, 407, 685
BspLI GGNNCC 5 cut(s) 223, 283, 332, 531, 544
BspMI ACCTGC 2 cut(s) 380, 719
BspPI GGATC 2 cut(s) 104, 625
BspT104I TTCGAA 1 cut(s) 731
BspT107I GGYRCC 1 cut(s) 281
BsrFI RCCGGY 3 cut(s) 230, 433, 686
BsrI ACTGG 2 cut(s) 531, 748
BssAI RCCGGY 3 cut(s) 230, 433, 686
BssECI CCNNGG 3 cut(s) 311, 694, 756
BssMI GATC 3 cut(s) 96, 617, 735
BssNI GRCGYC 1 cut(s) 437
BssSI CACGAG 1 cut(s) 562
BssT1I CCWWGG 2 cut(s) 311, 694
Bst2BI CACGAG 1 cut(s) 562
Bst2UI CCWGG 2 cut(s) 42, 758
Bst4CI ACNGT 3 cut(s) 211, 680, 809
BstACI GRCGYC 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 731
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 5 cut(s) 54, 168, 339, 394, 672
BstDSI CCRYGG 2 cut(s) 311, 694
BstF5I GGATG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 3 cut(s) 377, 419, 572
BstKTI GATC 3 cut(s) 99, 620, 738
BstMBI GATC 3 cut(s) 96, 617, 735
BstMCI CGRYCG 1 cut(s) 322
BstMWI GCNNNNNNNGC 5 cut(s) 164, 173, 281, 330, 605
BstNI CCWGG 2 cut(s) 42, 758
BstNSI RCATGY 2 cut(s) 411, 804
BstSCI CCNGG 4 cut(s) 40, 217, 260, 756
BstSLI GKGCMC 2 cut(s) 247, 755
BstV1I GCAGC 2 cut(s) 473, 554
BstX2I RGATCY 1 cut(s) 735
BstYI RGATCY 1 cut(s) 735
BstZI CGGCCG 1 cut(s) 319
BsuRI GGCC 4 cut(s) 217, 321, 333, 474
BtgI CCRYGG 2 cut(s) 311, 694
BtsCI GGATG 1 cut(s) 275
BtsI GCAGTG 2 cut(s) 562, 634
BtsIMutI CAGTG 4 cut(s) 347, 562, 634, 755
BveI ACCTGC 2 cut(s) 380, 719
Cac8I GCNNGC 1 cut(s) 409
CfoI GCGC 3 cut(s) 377, 419, 572
Cfr10I RCCGGY 3 cut(s) 230, 433, 686
Cfr13I GGNCC 3 cut(s) 216, 315, 331
CseI GACGC 1 cut(s) 426
Csp6I GTAC 2 cut(s) 676, 699
CviAII CATG 4 cut(s) 312, 408, 695, 801
CviQI GTAC 2 cut(s) 676, 699
DdeI CTNAG 5 cut(s) 54, 168, 339, 394, 672
DpnI GATC 3 cut(s) 98, 619, 737
DpnII GATC 3 cut(s) 96, 617, 735
DraIII CACNNNGTG 1 cut(s) 539
EaeI YGGCCR 2 cut(s) 319, 472
EagI CGGCCG 1 cut(s) 319
EclXI CGGCCG 1 cut(s) 319
Eco130I CCWWGG 2 cut(s) 311, 694
Eco24I GRGCYC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 315
Eco52I CGGCCG 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 40, 756
EcoT14I CCWWGG 2 cut(s) 311, 694
EcoT38I GRGCYC 1 cut(s) 169
ErhI CCWWGG 2 cut(s) 311, 694
FaeI CATG 4 cut(s) 315, 411, 698, 804
FaqI GGGAC 2 cut(s) 287, 579
FatI CATG 4 cut(s) 311, 407, 694, 800
FauI CCCGC 1 cut(s) 604
Fnu4HI GCNGC 6 cut(s) 322, 391, 462, 472, 568, 573
FokI GGATG 1 cut(s) 262
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 6 cut(s) 322, 391, 462, 472, 568, 573
FspBI CTAG 3 cut(s) 296, 458, 789
GlaI GCGC 3 cut(s) 376, 418, 571
GluI GCNGC 6 cut(s) 322, 391, 462, 472, 568, 573
HaeII RGCGCY 1 cut(s) 420
HaeIII GGCC 4 cut(s) 217, 321, 333, 474
HapII CCGG 9 cut(s) 219, 231, 261, 279, 318, 334, 434, 546, 687
HgaI GACGC 1 cut(s) 426
HhaI GCGC 3 cut(s) 377, 419, 572
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 4 cut(s) 315, 411, 698, 804
Hin6I GCGC 3 cut(s) 375, 417, 570
HinP1I GCGC 3 cut(s) 375, 417, 570
HinfI GANTC 3 cut(s) 59, 337, 353
HpaII CCGG 9 cut(s) 219, 231, 261, 279, 318, 334, 434, 546, 687
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 2 cut(s) 245, 369
Hpy188I TCNGA 3 cut(s) 17, 622, 720
Hpy188III TCNNGA 4 cut(s) 31, 190, 296, 742
Hpy8I GTNNAC 2 cut(s) 245, 369
Hpy99I CGWCG 1 cut(s) 442
HpyAV CCTTC 1 cut(s) 607
HpyCH4III ACNGT 3 cut(s) 211, 680, 809
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 5 cut(s) 245, 411, 425, 555, 684
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 173, 281, 330, 605
HpyF3I CTNAG 5 cut(s) 54, 168, 339, 394, 672
HpySE526I ACGT 1 cut(s) 513
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 4 cut(s) 315, 411, 698, 804
HspAI GCGC 3 cut(s) 375, 417, 570
Kzo9I GATC 3 cut(s) 96, 617, 735
LmnI GCTCC 3 cut(s) 350, 548, 812
Lsp1109I GCAGC 2 cut(s) 473, 554
LweI GCATC 2 cut(s) 36, 284
MaeI CTAG 3 cut(s) 296, 458, 789
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 803
MalI GATC 3 cut(s) 98, 619, 737
MboI GATC 3 cut(s) 96, 617, 735
MboII GAAGA 2 cut(s) 730, 745
MfeI CAATTG 1 cut(s) 76
MflI RGATCY 1 cut(s) 735
MhlI GDGCHC 4 cut(s) 169, 247, 347, 755
MluCI AATT 6 cut(s) 49, 76, 153, 426, 583, 817
MlyI GAGTC 2 cut(s) 331, 347
MmeI TCCRAC 2 cut(s) 40, 743
MnlI CCTC 5 cut(s) 265, 295, 298, 681, 726
MroXI GAANNNNTTC 2 cut(s) 49, 737
MseI TTAA 1 cut(s) 663
MspI CCGG 9 cut(s) 219, 231, 261, 279, 318, 334, 434, 546, 687
MspR9I CCNGG 4 cut(s) 42, 219, 262, 758
MunI CAATTG 1 cut(s) 76
MvaI CCWGG 2 cut(s) 42, 758
MwoI GCNNNNNNNGC 5 cut(s) 164, 173, 281, 330, 605
NciI CCSGG 2 cut(s) 219, 262
NcoI CCATGG 2 cut(s) 311, 694
NdeII GATC 3 cut(s) 96, 617, 735
NlaIII CATG 4 cut(s) 315, 411, 698, 804
NlaIV GGNNCC 5 cut(s) 223, 283, 332, 531, 544
NspI RCATGY 2 cut(s) 411, 804
NspV TTCGAA 1 cut(s) 731
PaeI GCATGC 1 cut(s) 411
PaqCI CACCTGC 1 cut(s) 380
PciI ACATGT 1 cut(s) 800
PdmI GAANNNNTTC 2 cut(s) 49, 737
PfeI GAWTC 1 cut(s) 59
PflMI CCANNNNNTGG 1 cut(s) 539
PkrI GCNGC 6 cut(s) 323, 392, 463, 473, 569, 574
PleI GAGTC 2 cut(s) 331, 347
PpsI GAGTC 2 cut(s) 331, 347
PscI ACATGT 1 cut(s) 800
Psp6I CCWGG 2 cut(s) 40, 756
PspGI CCWGG 2 cut(s) 40, 756
PspN4I GGNNCC 5 cut(s) 223, 283, 332, 531, 544
PspPI GGNCC 3 cut(s) 216, 315, 331
PsuI RGATCY 1 cut(s) 735
RsaI GTAC 2 cut(s) 677, 700
RsaNI GTAC 2 cut(s) 676, 699
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 6 cut(s) 322, 391, 462, 472, 568, 573
Sau3AI GATC 3 cut(s) 96, 617, 735
Sau96I GGNCC 3 cut(s) 216, 315, 331
ScaI AGTACT 1 cut(s) 677
SchI GAGTC 2 cut(s) 331, 347
ScrFI CCNGG 4 cut(s) 42, 219, 262, 758
SduI GDGCHC 4 cut(s) 169, 247, 347, 755
SetI ASST 7 cut(s) 374, 400, 516, 541, 569, 713, 817
SfaNI GCATC 2 cut(s) 36, 284
SfuI TTCGAA 1 cut(s) 731
SgrAI CRCCGGYG 2 cut(s) 433, 686
SinI GGWCC 1 cut(s) 315
SphI GCATGC 1 cut(s) 411
Sse9I AATT 6 cut(s) 49, 76, 153, 426, 583, 817
SspMI CTAG 3 cut(s) 296, 458, 789
StyD4I CCNGG 4 cut(s) 40, 217, 260, 756
StyI CCWWGG 2 cut(s) 311, 694
TaaI ACNGT 3 cut(s) 211, 680, 809
TaiI ACGT 1 cut(s) 516
TaqI TCGA 3 cut(s) 133, 267, 731
TasI AATT 6 cut(s) 49, 76, 153, 426, 583, 817
TatI WGTACW 1 cut(s) 675
TauI GCSGC 4 cut(s) 324, 393, 474, 575
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 4 cut(s) 347, 562, 634, 755
TseI GCWGC 2 cut(s) 461, 567
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 4 cut(s) 347, 562, 634, 755
Van91I CCANNNNNTGG 1 cut(s) 539
VneI GTGCAC 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 315
XapI RAATTY 1 cut(s) 49
XbaI TCTAGA 1 cut(s) 295
XceI RCATGY 2 cut(s) 411, 804
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmnI GAANNNNTTC 2 cut(s) 49, 737
XspI CTAG 3 cut(s) 296, 458, 789
ZrmI AGTACT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.