FvH4_6g24670

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000594
Physical Location & Seq
Reverse (-)
18708661 .. 18710045
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24670.t1

Sequence Viewer

Length: 750 bp
ATGATGAAAATCCAAGTACAACTCCTCTACCTTACCTTCGCCTGCTTCCTTTTCTTTCCAGGCGCACTTCCGGCCACAATTTCCATCACAAACAAGTGCCCCTTCACGGTCTGGCCAGCAACCCAAACTTCTGATCTCAAACCTCCCTTAGCATTGCCGAGTAACGTGTTGGCACCCCAAGCTAGCACCACTGTGGTCACTCCGGTTCCATGGAATGGCCGCTTCTGGGGCCGTACCAACTGCTTCACGGACAATTCCGGAAAATTCACTTGTGAAAAATCAGGGGATTGCGCATCCGGTCAGGAATCATGCAACGGAAATGGAGGAGTTCCTCCAGCCACGTTGGTGGAATTTTTTATCGCAGCAGGCGGGGGTCAAGATTACTACGATGTTAGTCTTGTTGATGGCTTCAACTTGCCCATGTCCGTGGCCGCTCAAGGCGGTCATGAGCCCGGGACTTGTCGGACCTCTACCTGCAGAGCCAACGTAAACGCTAATTGTCCGAGAGAGCTACAAGTAACGGGGGCCGGCGGGAGCGTGGTCGGCTGCATGAGCGCGTGCACCAAGTTCGGTGAGCCCAGGTATTGCTGCACTGGACCTAATAATAAGCCAGAGACATGTCCTCCTACTGACTACTCTAGGAAGTTTAGTGAACAATGCCCTGAGGCTTACAGCTACGCTTATGATGACAAGAAAGGCACATTCACTTGCTCCGGGGGACCTAACTACGCTATTACTTTCTGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

250

Amino Acids

26.5

Weight (kDa)

5.84

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 249 2.3e-72 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 292
Acc36I ACCTGC 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 434
AccII CGCG 1 cut(s) 557
AccIII TCCGGA 1 cut(s) 257
AciI CCGC 5 cut(s) 220, 369, 432, 441, 531
AcoI YGGCCR 4 cut(s) 72, 113, 217, 429
AcsI RAATTY 2 cut(s) 263, 350
AfaI GTAC 2 cut(s) 18, 235
AfiI CCNNNNNNNGG 3 cut(s) 106, 215, 226
AflIII ACRYGT 2 cut(s) 165, 617
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 2 cut(s) 58, 578
AleI CACNNNNGTG 2 cut(s) 191, 344
AluBI AGCT 3 cut(s) 182, 511, 675
AluI AGCT 3 cut(s) 182, 511, 675
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 1 cut(s) 608
Alw44I GTGCAC 1 cut(s) 559
Ama87I CYCGRG 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 257
AoxI GGCC 6 cut(s) 72, 113, 217, 229, 429, 525
ApaLI GTGCAC 1 cut(s) 559
ApeKI GCWGC 3 cut(s) 362, 546, 588
ApoI RAATTY 2 cut(s) 263, 350
AspLEI GCGC 3 cut(s) 65, 293, 557
AspS9I GGNCC 5 cut(s) 229, 465, 525, 596, 719
AsuC2I CCSGG 3 cut(s) 453, 454, 715
AsuHPI GGTGA 1 cut(s) 584
AsuNHI GCTAGC 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 3 cut(s) 465, 596, 719
AxyI CCTNAGG 1 cut(s) 663
BaeGI GKGCMC 2 cut(s) 101, 563
BalI TGGCCA 1 cut(s) 115
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 2 cut(s) 453, 579
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 3 cut(s) 374, 533, 575
BccI CCATC 2 cut(s) 92, 398
BceAI ACGGC 1 cut(s) 216
BcgI CGANNNNNNTGC 2 cut(s) 550, 584
BciT130I CCWGG 2 cut(s) 60, 580
BcnI CCSGG 3 cut(s) 453, 454, 715
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 2 cut(s) 183, 639
BfmI CTRYAG 1 cut(s) 475
BfuAI ACCTGC 1 cut(s) 482
BisI GCNGC 5 cut(s) 220, 363, 432, 547, 589
BlsI GCNGC 5 cut(s) 221, 364, 433, 548, 590
Bme1390I CCNGG 5 cut(s) 60, 453, 454, 580, 715
Bme18I GGWCC 3 cut(s) 465, 596, 719
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 5 cut(s) 229, 465, 525, 596, 719
BmiI GGNNCC 5 cut(s) 174, 207, 230, 526, 720
BmrFI CCNGG 5 cut(s) 60, 453, 454, 580, 715
BmsI GCATC 1 cut(s) 302
BmtI GCTAGC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 420
BpuMI CCSGG 3 cut(s) 453, 454, 715
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 5 cut(s) 209, 426, 452, 578, 714
BsaWI WCCGGW 3 cut(s) 202, 257, 296
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 215, 226
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 1 cut(s) 598
Bse21I CCTNAGG 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 8
BseAI TCCGGA 1 cut(s) 257
BseBI CCWGG 2 cut(s) 60, 580
BseDI CCNNGG 5 cut(s) 209, 426, 452, 578, 714
BseGI GGATG 1 cut(s) 293
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 106, 215, 226
BseMI GCAATG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 654
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 2 cut(s) 14, 339
BseSI GKGCMC 2 cut(s) 101, 563
BseXI GCAGC 3 cut(s) 374, 533, 575
BsgI GTGCAG 1 cut(s) 574
Bsh1236I CGCG 1 cut(s) 557
BshFI GGCC 6 cut(s) 74, 115, 219, 231, 431, 527
BshNI GGYRCC 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 563
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 7 cut(s) 71, 203, 258, 297, 453, 528, 714
BslFI GGGAC 2 cut(s) 469, 732
BslI CCNNNNNNNGG 3 cut(s) 106, 215, 226
BsmAI GTCTC 1 cut(s) 608
BsmFI GGGAC 2 cut(s) 469, 732
BsnI GGCC 6 cut(s) 74, 115, 219, 231, 431, 527
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 4 cut(s) 101, 453, 563, 579
Bsp13I TCCGGA 1 cut(s) 257
Bsp143I GATC 1 cut(s) 133
Bsp19I CCATGG 1 cut(s) 209
BspACI CCGC 5 cut(s) 220, 369, 432, 441, 531
BspANI GGCC 6 cut(s) 74, 115, 219, 231, 431, 527
BspCNI CTCAG 1 cut(s) 655
BspEI TCCGGA 1 cut(s) 257
BspFNI CGCG 1 cut(s) 557
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 5 cut(s) 174, 207, 230, 526, 720
BspMAI CTGCAG 1 cut(s) 479
BspMI ACCTGC 1 cut(s) 482
BspOI GCTAGC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 1 cut(s) 598
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 5 cut(s) 209, 426, 452, 578, 714
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 209
Bst2UI CCWGG 2 cut(s) 60, 580
Bst4CI ACNGT 2 cut(s) 109, 193
BstC8I GCNNGC 6 cut(s) 43, 117, 184, 367, 529, 559
BstDEI CTNAG 2 cut(s) 148, 663
BstDSI CCRYGG 2 cut(s) 209, 426
BstF5I GGATG 1 cut(s) 293
BstFNI CGCG 1 cut(s) 557
BstHHI GCGC 3 cut(s) 65, 293, 557
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 5 cut(s) 71, 179, 228, 543, 552
BstNI CCWGG 2 cut(s) 60, 580
BstNSI RCATGY 1 cut(s) 621
BstSCI CCNGG 5 cut(s) 58, 451, 452, 578, 713
BstSFI CTRYAG 1 cut(s) 475
BstSLI GKGCMC 2 cut(s) 101, 563
BstUI CGCG 1 cut(s) 557
BstV1I GCAGC 3 cut(s) 374, 533, 575
BstXI CCANNNNNNTGG 2 cut(s) 346, 427
Bsu36I CCTNAGG 1 cut(s) 663
BsuRI GGCC 6 cut(s) 74, 115, 219, 231, 431, 527
BtgI CCRYGG 2 cut(s) 209, 426
BtsCI GGATG 1 cut(s) 293
BtsIMutI CAGTG 2 cut(s) 189, 591
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 6 cut(s) 43, 117, 184, 367, 529, 559
CciI TCATGA 1 cut(s) 445
CfoI GCGC 3 cut(s) 65, 293, 557
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 5 cut(s) 229, 465, 525, 596, 719
Cfr9I CCCGGG 1 cut(s) 452
Csp6I GTAC 2 cut(s) 17, 234
CviAII CATG 6 cut(s) 210, 309, 421, 446, 550, 618
CviQI GTAC 2 cut(s) 17, 234
DdeI CTNAG 2 cut(s) 148, 663
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EaeI YGGCCR 4 cut(s) 72, 113, 217, 429
Eco130I CCWWGG 1 cut(s) 209
Eco24I GRGCYC 2 cut(s) 453, 579
Eco47I GGWCC 3 cut(s) 465, 596, 719
Eco81I CCTNAGG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 719
EcoRII CCWGG 2 cut(s) 58, 578
EcoT14I CCWWGG 1 cut(s) 209
EcoT38I GRGCYC 2 cut(s) 453, 579
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 6 cut(s) 213, 312, 424, 449, 553, 621
FaiI YATR 8 cut(s) 211, 310, 422, 447, 551, 619, 684, 748
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FaqI GGGAC 2 cut(s) 469, 732
FatI CATG 6 cut(s) 209, 308, 420, 445, 549, 617
FauI CCCGC 2 cut(s) 362, 524
Fnu4HI GCNGC 5 cut(s) 220, 363, 432, 547, 589
FokI GGATG 1 cut(s) 280
FriOI GRGCYC 2 cut(s) 453, 579
Fsp4HI GCNGC 5 cut(s) 220, 363, 432, 547, 589
FspBI CTAG 2 cut(s) 183, 639
FspI TGCGCA 1 cut(s) 292
GlaI GCGC 3 cut(s) 64, 292, 556
GluI GCNGC 5 cut(s) 220, 363, 432, 547, 589
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 6 cut(s) 74, 115, 219, 231, 431, 527
HapII CCGG 7 cut(s) 71, 203, 258, 297, 453, 528, 714
HhaI GCGC 3 cut(s) 65, 293, 557
Hin1II CATG 6 cut(s) 213, 312, 424, 449, 553, 621
Hin6I GCGC 3 cut(s) 63, 291, 555
HinP1I GCGC 3 cut(s) 63, 291, 555
HinfI GANTC 1 cut(s) 305
HpaII CCGG 7 cut(s) 71, 203, 258, 297, 453, 528, 714
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 3 cut(s) 490, 561, 653
Hpy188I TCNGA 3 cut(s) 133, 465, 504
Hpy188III TCNNGA 4 cut(s) 258, 302, 377, 446
Hpy8I GTNNAC 3 cut(s) 490, 561, 653
HpyAV CCTTC 2 cut(s) 46, 112
HpyCH4III ACNGT 2 cut(s) 109, 193
HpyCH4IV ACGT 3 cut(s) 165, 341, 486
HpyCH4V TGCA 5 cut(s) 312, 477, 549, 561, 591
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 179, 228, 543, 552
HpyF3I CTNAG 2 cut(s) 148, 663
HpySE526I ACGT 3 cut(s) 165, 341, 486
Hsp92II CATG 6 cut(s) 213, 312, 424, 449, 553, 621
HspAI GCGC 3 cut(s) 63, 291, 555
Kpn2I TCCGGA 1 cut(s) 257
KroI GCCGGC 1 cut(s) 527
KroNI GCCGGC 1 cut(s) 529
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 2 cut(s) 534, 716
Lsp1109I GCAGC 3 cut(s) 374, 533, 575
LweI GCATC 1 cut(s) 302
MaeI CTAG 2 cut(s) 183, 639
MaeII ACGT 3 cut(s) 165, 341, 486
MaeIII GTNAC 3 cut(s) 161, 196, 517
MalI GATC 1 cut(s) 135
MbiI CCGCTC 1 cut(s) 434
MboI GATC 1 cut(s) 133
MhlI GDGCHC 4 cut(s) 101, 453, 563, 579
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 5 cut(s) 78, 253, 263, 350, 496
MluNI TGGCCA 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 7 cut(s) 35, 153, 317, 342, 478, 633, 658
Mox20I TGGCCA 1 cut(s) 115
MroI TCCGGA 1 cut(s) 257
MroNI GCCGGC 1 cut(s) 527
MscI TGGCCA 1 cut(s) 115
MslI CAYNNNNRTG 3 cut(s) 191, 344, 425
Msp20I TGGCCA 1 cut(s) 115
MspI CCGG 7 cut(s) 71, 203, 258, 297, 453, 528, 714
MspR9I CCNGG 5 cut(s) 60, 453, 454, 580, 715
MvaI CCWGG 2 cut(s) 60, 580
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 5 cut(s) 71, 179, 228, 543, 552
NaeI GCCGGC 1 cut(s) 529
NciI CCSGG 3 cut(s) 453, 454, 715
NcoI CCATGG 1 cut(s) 209
NdeII GATC 1 cut(s) 133
NgoMIV GCCGGC 1 cut(s) 527
NheI GCTAGC 1 cut(s) 182
NlaIII CATG 6 cut(s) 213, 312, 424, 449, 553, 621
NlaIV GGNNCC 5 cut(s) 174, 207, 230, 526, 720
NmeAIII GCCGAG 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 196
NsbI TGCGCA 1 cut(s) 292
NspI RCATGY 1 cut(s) 621
OliI CACNNNNGTG 2 cut(s) 191, 344
PagI TCATGA 1 cut(s) 445
PciI ACATGT 1 cut(s) 617
PdiI GCCGGC 1 cut(s) 529
PfeI GAWTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 215
PkrI GCNGC 5 cut(s) 221, 364, 433, 548, 590
PpuMI RGGWCCY 1 cut(s) 719
PscI ACATGT 1 cut(s) 617
Psp5II RGGWCCY 1 cut(s) 719
Psp6I CCWGG 2 cut(s) 58, 578
PspGI CCWGG 2 cut(s) 58, 578
PspN4I GGNNCC 5 cut(s) 174, 207, 230, 526, 720
PspPI GGNCC 5 cut(s) 229, 465, 525, 596, 719
PspPPI RGGWCCY 1 cut(s) 719
PstI CTGCAG 1 cut(s) 479
RsaI GTAC 2 cut(s) 18, 235
RsaNI GTAC 2 cut(s) 17, 234
RseI CAYNNNNRTG 3 cut(s) 191, 344, 425
SatI GCNGC 5 cut(s) 220, 363, 432, 547, 589
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 5 cut(s) 229, 465, 525, 596, 719
ScrFI CCNGG 5 cut(s) 60, 453, 454, 580, 715
SduI GDGCHC 4 cut(s) 101, 453, 563, 579
SfaNI GCATC 1 cut(s) 302
SfcI CTRYAG 1 cut(s) 475
SinI GGWCC 3 cut(s) 465, 596, 719
SmaI CCCGGG 1 cut(s) 454
SmiMI CAYNNNNRTG 3 cut(s) 191, 344, 425
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
Sse9I AATT 5 cut(s) 78, 253, 263, 350, 496
SsiI CCGC 5 cut(s) 220, 369, 432, 441, 531
SspMI CTAG 2 cut(s) 183, 639
StyD4I CCNGG 5 cut(s) 58, 451, 452, 578, 713
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 2 cut(s) 109, 193
TaiI ACGT 3 cut(s) 168, 344, 489
TasI AATT 5 cut(s) 78, 253, 263, 350, 496
TatI WGTACW 1 cut(s) 16
TauI GCSGC 2 cut(s) 222, 434
TfiI GAWTC 1 cut(s) 305
TscAI CASTG 2 cut(s) 196, 598
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 3 cut(s) 362, 546, 588
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 3 cut(s) 263, 330, 415
TspMI CCCGGG 1 cut(s) 452
TspRI CASTG 2 cut(s) 196, 598
Van91I CCANNNNNTGG 1 cut(s) 215
VneI GTGCAC 1 cut(s) 559
VpaK11BI GGWCC 3 cut(s) 465, 596, 719
XapI RAATTY 2 cut(s) 263, 350
XceI RCATGY 1 cut(s) 621
XmaI CCCGGG 1 cut(s) 452
XspI CTAG 2 cut(s) 183, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.