Rmu_co8355789.1_g000001

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8355789.1
OG0000594
Physical Location & Seq
Reverse (-)
131 .. 1019
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8355789.1_g000001.1.cds

Sequence Viewer

Length: 708 bp
atgaaatctcaagtttcattgctctctcttttggtgtcggctacattcactttcacgaacaaatgccctttcacagtttggcccggaaccctaaccggcggtggcggtgcacaactatcctcaaccgggttcgagttagcatccggtgcctcctcaactctagatgtccctgccccatggtccggccgcttctggggccggactcagtgctccacagactcattgggaaagttcacctgcgccaccgcagactgcggctcaggtcaagtcgcatgcaacggcgctggtgcaattccaccggcgtcgctggtggaactgaccctagcagcgaacggcggccaagacttctatgatattagtctggttgatggcttcaacgtgcctgttcaactggttccacaaggtggctccggtgggtgcagtgccacgagctgcgccgccaatgtcaattcagtttgtcccgcagagttggctgtgaagggatcagatggcagtgtgattgcttgtaaaagtgcgtgtttggtttttaatcagcctcagtactgttgcaccggcgaccatggtactccgcaaacctgccctccgactgattattcgaagatcttcaagaaccagtgcccccaggcttatagttatgcttatgatgataagtctagcattttcacatgtaacggtggagctaattatgtgattactttttgtccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

235

Amino Acids

24.07

Weight (kDa)

4.72

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 245
Acc36I ACCTGC 2 cut(s) 245, 584
AccB1I GGYRCC 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 404
AciI CCGC 9 cut(s) 99, 105, 187, 246, 255, 336, 438, 462, 569
AclWI GGATC 1 cut(s) 490
AcoI YGGCCR 2 cut(s) 184, 337
AcyI GRCGYC 1 cut(s) 302
AdeI CACNNNGTG 1 cut(s) 404
AfaI GTAC 2 cut(s) 542, 565
AfiI CCNNNNNNNGG 4 cut(s) 126, 182, 193, 404
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 3 cut(s) 376, 389, 607
AjnI CCWGG 1 cut(s) 621
AluBI AGCT 2 cut(s) 432, 680
AluI AGCT 2 cut(s) 432, 680
Alw21I GWGCWC 2 cut(s) 112, 212
Alw44I GTGCAC 1 cut(s) 108
AlwI GGATC 1 cut(s) 490
AoxI GGCC 4 cut(s) 80, 184, 196, 337
ApaLI GTGCAC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 326, 432
ArsI GACNNNNNNTTYG 2 cut(s) 577, 609
Asp700I GAANNNNTTC 1 cut(s) 602
AspLEI GCGC 3 cut(s) 242, 284, 437
AspS9I GGNCC 3 cut(s) 81, 180, 196
AsuC2I CCSGG 2 cut(s) 84, 127
AsuHPI GGTGA 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 596
AvaII GGWCC 1 cut(s) 180
BaeGI GKGCMC 2 cut(s) 112, 620
BanI GGYRCC 1 cut(s) 146
BauI CACGAG 1 cut(s) 427
Bbv12I GWGCWC 2 cut(s) 112, 212
BbvI GCAGC 2 cut(s) 338, 419
BccI CCATC 2 cut(s) 362, 482
BceAI ACGGC 2 cut(s) 295, 349
BciT130I CCWGG 1 cut(s) 623
BcnI CCSGG 2 cut(s) 84, 127
BfaI CTAG 3 cut(s) 161, 323, 654
BfoI RGCGCY 1 cut(s) 285
BfuAI ACCTGC 2 cut(s) 245, 584
BglII AGATCT 1 cut(s) 600
BisI GCNGC 6 cut(s) 187, 256, 327, 337, 433, 438
BlsI GCNGC 6 cut(s) 188, 257, 328, 338, 434, 439
BmcAI AGTACT 1 cut(s) 542
Bme1390I CCNGG 3 cut(s) 84, 127, 623
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 3 cut(s) 81, 180, 196
BmiI GGNNCC 5 cut(s) 88, 148, 197, 396, 409
BmrFI CCNGG 3 cut(s) 84, 127, 623
BmsI GCATC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 259
Bpu14I TTCGAA 1 cut(s) 596
BpuMI CCSGG 2 cut(s) 84, 127
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 3 cut(s) 176, 559, 621
BsaWI WCCGGW 2 cut(s) 143, 410
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 182, 193, 404
Bse118I RCCGGY 3 cut(s) 95, 298, 551
Bse1I ACTGG 2 cut(s) 396, 613
Bse3DI GCAATG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 3 cut(s) 176, 559, 621
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 4 cut(s) 126, 182, 193, 404
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 3 cut(s) 218, 273, 551
BseNI ACTGG 2 cut(s) 396, 613
BseRI GAGGAG 1 cut(s) 142
BseSI GKGCMC 2 cut(s) 112, 620
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 2 cut(s) 338, 419
BsgI GTGCAG 1 cut(s) 439
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 4 cut(s) 82, 186, 198, 339
BshNI GGYRCC 1 cut(s) 146
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 2 cut(s) 112, 212
BsiSI CCGG 9 cut(s) 84, 96, 126, 144, 183, 199, 299, 411, 552
BslFI GGGAC 2 cut(s) 152, 444
BslI CCNNNNNNNGG 4 cut(s) 126, 182, 193, 404
BsmFI GGGAC 2 cut(s) 152, 444
BsnI GGCC 4 cut(s) 82, 186, 198, 339
Bsp119I TTCGAA 1 cut(s) 596
Bsp1286I GDGCHC 3 cut(s) 112, 212, 620
Bsp143I GATC 2 cut(s) 482, 600
Bsp19I CCATGG 2 cut(s) 176, 559
BspACI CCGC 9 cut(s) 99, 105, 187, 246, 255, 336, 438, 462, 569
BspANI GGCC 4 cut(s) 82, 186, 198, 339
BspCNI CTCAG 3 cut(s) 217, 272, 550
BspLI GGNNCC 5 cut(s) 88, 148, 197, 396, 409
BspMI ACCTGC 2 cut(s) 245, 584
BspPI GGATC 1 cut(s) 490
BspT104I TTCGAA 1 cut(s) 596
BspT107I GGYRCC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 17
BsrFI RCCGGY 3 cut(s) 95, 298, 551
BsrI ACTGG 2 cut(s) 396, 613
BssAI RCCGGY 3 cut(s) 95, 298, 551
BssECI CCNNGG 3 cut(s) 176, 559, 621
BssMI GATC 2 cut(s) 482, 600
BssNI GRCGYC 1 cut(s) 302
BssSI CACGAG 1 cut(s) 427
BssT1I CCWWGG 2 cut(s) 176, 559
Bst2BI CACGAG 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 3 cut(s) 76, 545, 674
BstACI GRCGYC 1 cut(s) 302
BstAPI GCANNNNNTGC 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 3 cut(s) 204, 259, 537
BstDSI CCRYGG 2 cut(s) 176, 559
BstF5I GGATG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 3 cut(s) 242, 284, 437
BstKTI GATC 2 cut(s) 485, 603
BstMBI GATC 2 cut(s) 482, 600
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 3 cut(s) 146, 195, 470
BstNI CCWGG 1 cut(s) 623
BstNSI RCATGY 2 cut(s) 276, 669
BstSCI CCNGG 3 cut(s) 82, 125, 621
BstSLI GKGCMC 2 cut(s) 112, 620
BstV1I GCAGC 2 cut(s) 338, 419
BstX2I RGATCY 1 cut(s) 600
BstYI RGATCY 1 cut(s) 600
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 4 cut(s) 82, 186, 198, 339
BtgI CCRYGG 2 cut(s) 176, 559
BtsCI GGATG 1 cut(s) 140
BtsI GCAGTG 2 cut(s) 427, 499
BtsIMutI CAGTG 4 cut(s) 212, 427, 499, 620
BveI ACCTGC 2 cut(s) 245, 584
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 3 cut(s) 242, 284, 437
Cfr10I RCCGGY 3 cut(s) 95, 298, 551
Cfr13I GGNCC 3 cut(s) 81, 180, 196
CseI GACGC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 541, 564
CviAII CATG 4 cut(s) 177, 273, 560, 666
CviQI GTAC 2 cut(s) 541, 564
DdeI CTNAG 3 cut(s) 204, 259, 537
DpnI GATC 2 cut(s) 484, 602
DpnII GATC 2 cut(s) 482, 600
DraIII CACNNNGTG 1 cut(s) 404
EaeI YGGCCR 2 cut(s) 184, 337
EagI CGGCCG 1 cut(s) 184
EclXI CGGCCG 1 cut(s) 184
Eco130I CCWWGG 2 cut(s) 176, 559
Eco47I GGWCC 1 cut(s) 180
Eco52I CGGCCG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 2 cut(s) 176, 559
ErhI CCWWGG 2 cut(s) 176, 559
FaeI CATG 4 cut(s) 180, 276, 563, 669
FaiI YATR 9 cut(s) 178, 274, 351, 561, 630, 636, 642, 667, 687
FaqI GGGAC 2 cut(s) 152, 444
FatI CATG 4 cut(s) 176, 272, 559, 665
FauI CCCGC 1 cut(s) 469
Fnu4HI GCNGC 6 cut(s) 187, 256, 327, 337, 433, 438
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 6 cut(s) 187, 256, 327, 337, 433, 438
FspBI CTAG 3 cut(s) 161, 323, 654
GlaI GCGC 3 cut(s) 241, 283, 436
GluI GCNGC 6 cut(s) 187, 256, 327, 337, 433, 438
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 4 cut(s) 82, 186, 198, 339
HapII CCGG 9 cut(s) 84, 96, 126, 144, 183, 199, 299, 411, 552
HgaI GACGC 1 cut(s) 291
HhaI GCGC 3 cut(s) 242, 284, 437
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 4 cut(s) 180, 276, 563, 669
Hin6I GCGC 3 cut(s) 240, 282, 435
HinP1I GCGC 3 cut(s) 240, 282, 435
HinfI GANTC 2 cut(s) 202, 218
HpaII CCGG 9 cut(s) 84, 96, 126, 144, 183, 199, 299, 411, 552
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 2 cut(s) 110, 234
Hpy188I TCNGA 2 cut(s) 487, 585
Hpy188III TCNNGA 3 cut(s) 55, 161, 607
Hpy8I GTNNAC 2 cut(s) 110, 234
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 3 cut(s) 76, 545, 674
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 5 cut(s) 110, 276, 290, 420, 549
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 195, 470
HpyF3I CTNAG 3 cut(s) 204, 259, 537
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 4 cut(s) 180, 276, 563, 669
HspAI GCGC 3 cut(s) 240, 282, 435
Kzo9I GATC 2 cut(s) 482, 600
LmnI GCTCC 3 cut(s) 215, 413, 677
Lsp1109I GCAGC 2 cut(s) 338, 419
LweI GCATC 1 cut(s) 149
MaeI CTAG 3 cut(s) 161, 323, 654
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 668
MalI GATC 2 cut(s) 484, 602
MboI GATC 2 cut(s) 482, 600
MboII GAAGA 2 cut(s) 595, 610
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 3 cut(s) 112, 212, 620
MluCI AATT 3 cut(s) 291, 448, 682
MlyI GAGTC 2 cut(s) 196, 212
MmeI TCCRAC 1 cut(s) 608
MnlI CCTC 5 cut(s) 130, 160, 163, 546, 591
MroXI GAANNNNTTC 1 cut(s) 602
MseI TTAA 1 cut(s) 528
MspI CCGG 9 cut(s) 84, 96, 126, 144, 183, 199, 299, 411, 552
MspR9I CCNGG 3 cut(s) 84, 127, 623
MvaI CCWGG 1 cut(s) 623
MwoI GCNNNNNNNGC 3 cut(s) 146, 195, 470
NciI CCSGG 2 cut(s) 84, 127
NcoI CCATGG 2 cut(s) 176, 559
NdeII GATC 2 cut(s) 482, 600
NlaIII CATG 4 cut(s) 180, 276, 563, 669
NlaIV GGNNCC 5 cut(s) 88, 148, 197, 396, 409
NspI RCATGY 2 cut(s) 276, 669
NspV TTCGAA 1 cut(s) 596
PaeI GCATGC 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 245
PciI ACATGT 1 cut(s) 665
PdmI GAANNNNTTC 1 cut(s) 602
PflMI CCANNNNNTGG 1 cut(s) 404
PkrI GCNGC 6 cut(s) 188, 257, 328, 338, 434, 439
PleI GAGTC 2 cut(s) 196, 212
PpsI GAGTC 2 cut(s) 196, 212
PscI ACATGT 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 621
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 5 cut(s) 88, 148, 197, 396, 409
PspPI GGNCC 3 cut(s) 81, 180, 196
PsuI RGATCY 1 cut(s) 600
RsaI GTAC 2 cut(s) 542, 565
RsaNI GTAC 2 cut(s) 541, 564
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 6 cut(s) 187, 256, 327, 337, 433, 438
Sau3AI GATC 2 cut(s) 482, 600
Sau96I GGNCC 3 cut(s) 81, 180, 196
ScaI AGTACT 1 cut(s) 542
SchI GAGTC 2 cut(s) 196, 212
ScrFI CCNGG 3 cut(s) 84, 127, 623
SduI GDGCHC 3 cut(s) 112, 212, 620
SetI ASST 7 cut(s) 239, 265, 381, 406, 434, 578, 682
SfaNI GCATC 1 cut(s) 149
SfuI TTCGAA 1 cut(s) 596
SgrAI CRCCGGYG 2 cut(s) 298, 551
SinI GGWCC 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SphI GCATGC 1 cut(s) 276
Sse9I AATT 3 cut(s) 291, 448, 682
SsiI CCGC 9 cut(s) 99, 105, 187, 246, 255, 336, 438, 462, 569
SspMI CTAG 3 cut(s) 161, 323, 654
StyD4I CCNGG 3 cut(s) 82, 125, 621
StyI CCWWGG 2 cut(s) 176, 559
TaaI ACNGT 3 cut(s) 76, 545, 674
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 132, 596
TasI AATT 3 cut(s) 291, 448, 682
TatI WGTACW 1 cut(s) 540
TauI GCSGC 4 cut(s) 189, 258, 339, 440
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 4 cut(s) 212, 427, 499, 620
TseI GCWGC 2 cut(s) 326, 432
TspDTI ATGAA 2 cut(s) 6, 17
TspRI CASTG 4 cut(s) 212, 427, 499, 620
Van91I CCANNNNNTGG 1 cut(s) 404
VneI GTGCAC 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 2 cut(s) 276, 669
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 3 cut(s) 161, 323, 654
ZrmI AGTACT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.