pycom17g25380

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000594
Physical Location & Seq
Reverse (-)
23484486 .. 23485639
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g25380.1

Sequence Viewer

Length: 747 bp
ATGACGATGATGAAGAGCCAAGTAGCTTCCCTCCTCGGCCTCACCTTGGCCATCCTCTTCTTCTCAGGTGCACATGCAGCGAAAATCACTTTCACAAACAACTGCCCTAACACTGTCTGGCCAGCAACCCTAACCGGTGGCCAAAAACCTCAATTACCATCCACCGGGTTCGAACTAGCATCCAAAGCTAGCCAGTCAGTGGACGCTCCATCCCCATGGTCTGGTCGCTTCTGGGCTCGAACTAGATGCTCCACAGATGCCGCTGGAAAATTCTCTTGTGAAACTGCAGACTGTGGCTCTAGCCAGGTTGCATGCAACGGCAAAGGCGGAGCTACACCAGCAACTTTAGTAGAAATCACAATCGCAGAAAACGGGGGTCAAGATTTTTACGATGTTAGCCTTGTTGACGGCTTCAACTTGCCCATGTCCGTCGCTCCACAAGGCGGCACCGGCGAGTGCAAGGCCTCGACTTGCCCTGCGAATGTTAATGCGGCGTGCCCAACTCAATTCCAAGTAAAATCGGGTGATGGAAGTGTCATCAGTTGCAAAAGCGCTTGTGTGGCGTATGGCGAGCCGAAGTACTGCTGCTCTCCGCCTAATGATCAACCGGGGACATGTCCTCCCACAGAGTACTCTAAGATCTTTAAGGATCAGTGCCCACAAGCTTATAGCTACGCTTACGATGATAAAAGCAGCACATTCACCTGCAATGGCGGACCTGACTACATCATTACATTCTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

249

Amino Acids

25.9

Weight (kDa)

5.13

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 33 - 248 2.2e-78 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 713
Acc36I ACCTGC 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 446
AccB7I CCANNNNNTGG 2 cut(s) 199, 221
AciI CCGC 6 cut(s) 261, 327, 444, 491, 593, 714
AclWI GGATC 1 cut(s) 657
AcoI YGGCCR 3 cut(s) 48, 119, 139
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 2 cut(s) 581, 632
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 5 cut(s) 46, 164, 199, 221, 443
AflIII ACRYGT 1 cut(s) 614
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 1 cut(s) 415
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 5 cut(s) 26, 188, 332, 665, 672
AluI AGCT 5 cut(s) 26, 188, 332, 665, 672
Alw21I GWGCWC 1 cut(s) 73
Alw44I GTGCAC 1 cut(s) 69
AlwI GGATC 1 cut(s) 657
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 5 cut(s) 37, 48, 119, 139, 462
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 77, 585, 693
ApoI RAATTY 1 cut(s) 269
AsiGI ACCGGT 1 cut(s) 134
AspLEI GCGC 1 cut(s) 554
AspS9I GGNCC 1 cut(s) 716
AsuC2I CCSGG 2 cut(s) 166, 609
AsuHPI GGTGA 3 cut(s) 34, 536, 694
AsuII TTCGAA 1 cut(s) 171
AsuNHI GCTAGC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 716
BaeGI GKGCMC 3 cut(s) 73, 500, 659
BalI TGGCCA 3 cut(s) 50, 121, 141
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 3 cut(s) 89, 572, 705
BccI CCATC 4 cut(s) 59, 166, 217, 521
BceAI ACGGC 2 cut(s) 334, 424
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 601
BcnI CCSGG 2 cut(s) 166, 609
BfaI CTAG 4 cut(s) 176, 189, 243, 300
BfmI CTRYAG 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 555
BfuAI ACCTGC 1 cut(s) 713
BglII AGATCT 1 cut(s) 639
BisI GCNGC 6 cut(s) 78, 261, 445, 492, 586, 694
BlsI GCNGC 6 cut(s) 79, 262, 446, 493, 587, 695
BmcAI AGTACT 2 cut(s) 581, 632
Bme1390I CCNGG 3 cut(s) 166, 305, 609
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 716
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 3 cut(s) 166, 305, 609
BmsI GCATC 3 cut(s) 188, 236, 247
BmtI GCTAGC 1 cut(s) 192
Bpu14I TTCGAA 1 cut(s) 171
BpuMI CCSGG 2 cut(s) 166, 609
BsaJI CCNNGG 4 cut(s) 34, 45, 215, 608
BsaWI WCCGGW 1 cut(s) 134
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 164, 199, 221, 443
Bse118I RCCGGY 2 cut(s) 134, 449
Bse1I ACTGG 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 715
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 4 cut(s) 34, 45, 215, 608
BseGI GGATG 4 cut(s) 51, 158, 179, 209
BseLI CCNNNNNNNGG 5 cut(s) 46, 164, 199, 221, 443
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 3 cut(s) 73, 500, 659
BseXI GCAGC 3 cut(s) 89, 572, 705
BshFI GGCC 5 cut(s) 39, 50, 121, 141, 464
BshNI GGYRCC 1 cut(s) 446
BshTI ACCGGT 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 4 cut(s) 135, 165, 450, 608
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 5 cut(s) 46, 164, 199, 221, 443
BsmFI GGGAC 1 cut(s) 625
BsnI GGCC 5 cut(s) 39, 50, 121, 141, 464
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 4 cut(s) 73, 238, 500, 659
Bsp143I GATC 3 cut(s) 601, 639, 649
Bsp19I CCATGG 1 cut(s) 215
BspACI CCGC 6 cut(s) 261, 327, 444, 491, 593, 714
BspANI GGCC 5 cut(s) 39, 50, 121, 141, 464
BspCNI CTCAG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 448
BspMAI CTGCAG 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 713
BspOI GCTAGC 1 cut(s) 192
BspPI GGATC 1 cut(s) 657
BspQI GCTCTTC 1 cut(s) 8
BspT104I TTCGAA 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 715
BsrFI RCCGGY 2 cut(s) 134, 449
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 2 cut(s) 134, 449
BssECI CCNNGG 4 cut(s) 34, 45, 215, 608
BssMI GATC 3 cut(s) 601, 639, 649
BssT1I CCWWGG 2 cut(s) 45, 215
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 115, 293
Bst6I CTCTTC 2 cut(s) 8, 62
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 5 cut(s) 123, 190, 313, 496, 572
BstDEI CTNAG 2 cut(s) 64, 636
BstDSI CCRYGG 1 cut(s) 215
BstF5I GGATG 4 cut(s) 51, 158, 179, 209
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 1 cut(s) 554
BstKTI GATC 3 cut(s) 604, 642, 652
BstMBI GATC 3 cut(s) 601, 639, 649
BstMWI GCNNNNNNNGC 5 cut(s) 77, 185, 338, 450, 560
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 3 cut(s) 77, 315, 618
BstSCI CCNGG 3 cut(s) 164, 303, 607
BstSFI CTRYAG 1 cut(s) 285
BstSLI GKGCMC 3 cut(s) 73, 500, 659
BstV1I GCAGC 3 cut(s) 89, 572, 705
BstX2I RGATCY 1 cut(s) 639
BstXI CCANNNNNNTGG 1 cut(s) 216
BstYI RGATCY 1 cut(s) 639
BsuRI GGCC 5 cut(s) 39, 50, 121, 141, 464
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 4 cut(s) 51, 158, 179, 209
BtsIMutI CAGTG 3 cut(s) 111, 204, 659
BveI ACCTGC 1 cut(s) 713
Cac8I GCNNGC 5 cut(s) 123, 190, 313, 496, 572
CfoI GCGC 1 cut(s) 554
Cfr10I RCCGGY 2 cut(s) 134, 449
Cfr13I GGNCC 1 cut(s) 716
CseI GACGC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 580, 631
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 5 cut(s) 74, 216, 312, 424, 615
CviQI GTAC 2 cut(s) 580, 631
DdeI CTNAG 2 cut(s) 64, 636
DpnI GATC 3 cut(s) 603, 641, 651
DpnII GATC 3 cut(s) 601, 639, 649
EaeI YGGCCR 3 cut(s) 48, 119, 139
Eam1104I CTCTTC 2 cut(s) 8, 62
EarI CTCTTC 2 cut(s) 8, 62
EciI GGCGGA 3 cut(s) 342, 582, 729
Eco130I CCWWGG 2 cut(s) 45, 215
Eco147I AGGCCT 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 716
Eco47III AGCGCT 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 2 cut(s) 45, 215
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 45, 215
FaeI CATG 5 cut(s) 77, 219, 315, 427, 618
FaiI YATR 8 cut(s) 75, 217, 313, 425, 567, 616, 669, 745
FaqI GGGAC 1 cut(s) 625
FatI CATG 5 cut(s) 73, 215, 311, 423, 614
FbaI TGATCA 1 cut(s) 601
Fnu4HI GCNGC 6 cut(s) 78, 261, 445, 492, 586, 694
FokI GGATG 4 cut(s) 38, 145, 166, 196
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 6 cut(s) 78, 261, 445, 492, 586, 694
FspBI CTAG 4 cut(s) 176, 189, 243, 300
GlaI GCGC 1 cut(s) 553
GluI GCNGC 6 cut(s) 78, 261, 445, 492, 586, 694
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 5 cut(s) 39, 50, 121, 141, 464
HapII CCGG 4 cut(s) 135, 165, 450, 608
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 554
Hin1II CATG 5 cut(s) 77, 219, 315, 427, 618
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 663
HpaII CCGG 4 cut(s) 135, 165, 450, 608
HphI GGTGA 3 cut(s) 34, 536, 694
Hpy166II GTNNAC 3 cut(s) 71, 202, 406
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 3 cut(s) 71, 202, 406
Hpy99I CGWCG 1 cut(s) 434
HpyCH4III ACNGT 2 cut(s) 115, 293
HpyCH4V TGCA 8 cut(s) 71, 77, 287, 311, 315, 459, 546, 708
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 185, 338, 450, 560
HpyF3I CTNAG 2 cut(s) 64, 636
Hsp92II CATG 5 cut(s) 77, 219, 315, 427, 618
HspAI GCGC 1 cut(s) 552
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 3 cut(s) 601, 639, 649
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 4 cut(s) 211, 254, 329, 439
Lsp1109I GCAGC 3 cut(s) 89, 572, 705
LweI GCATC 3 cut(s) 188, 236, 247
MaeI CTAG 4 cut(s) 176, 189, 243, 300
MalI GATC 3 cut(s) 603, 641, 651
MboI GATC 3 cut(s) 601, 639, 649
MboII GAAGA 3 cut(s) 25, 49, 52
MflI RGATCY 1 cut(s) 639
MhlI GDGCHC 4 cut(s) 73, 238, 500, 659
MlsI TGGCCA 3 cut(s) 50, 121, 141
MluCI AATT 3 cut(s) 152, 269, 506
MluNI TGGCCA 3 cut(s) 50, 121, 141
MnlI CCTC 7 cut(s) 41, 44, 50, 65, 159, 475, 630
Mox20I TGGCCA 3 cut(s) 50, 121, 141
MscI TGGCCA 3 cut(s) 50, 121, 141
MseI TTAA 2 cut(s) 486, 645
MslI CAYNNNNRTG 1 cut(s) 214
Msp20I TGGCCA 3 cut(s) 50, 121, 141
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 4 cut(s) 135, 165, 450, 608
MspR9I CCNGG 3 cut(s) 166, 305, 609
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 5 cut(s) 77, 185, 338, 450, 560
NciI CCSGG 2 cut(s) 166, 609
NcoI CCATGG 1 cut(s) 215
NdeII GATC 3 cut(s) 601, 639, 649
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 5 cut(s) 77, 219, 315, 427, 618
NlaIV GGNNCC 1 cut(s) 448
NmeAIII GCCGAG 1 cut(s) 15
NspI RCATGY 3 cut(s) 77, 315, 618
NspV TTCGAA 1 cut(s) 171
PaeI GCATGC 1 cut(s) 315
PaqCI CACCTGC 1 cut(s) 713
PceI AGGCCT 1 cut(s) 464
PciI ACATGT 1 cut(s) 614
PciSI GCTCTTC 1 cut(s) 8
PflMI CCANNNNNTGG 2 cut(s) 199, 221
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 6 cut(s) 79, 262, 446, 493, 587, 695
PscI ACATGT 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 448
PspPI GGNCC 1 cut(s) 716
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 1 cut(s) 639
RsaI GTAC 2 cut(s) 581, 632
RsaNI GTAC 2 cut(s) 580, 631
RseI CAYNNNNRTG 1 cut(s) 214
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 486, 645
SatI GCNGC 6 cut(s) 78, 261, 445, 492, 586, 694
Sau3AI GATC 3 cut(s) 601, 639, 649
Sau96I GGNCC 1 cut(s) 716
ScaI AGTACT 2 cut(s) 581, 632
ScrFI CCNGG 3 cut(s) 166, 305, 609
SduI GDGCHC 4 cut(s) 73, 238, 500, 659
SfaNI GCATC 3 cut(s) 188, 236, 247
SfcI CTRYAG 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 171
SgrAI CRCCGGYG 1 cut(s) 449
SinI GGWCC 1 cut(s) 716
SmiMI CAYNNNNRTG 1 cut(s) 214
SphI GCATGC 1 cut(s) 315
Sse9I AATT 3 cut(s) 152, 269, 506
SseBI AGGCCT 1 cut(s) 464
SsiI CCGC 6 cut(s) 261, 327, 444, 491, 593, 714
SspMI CTAG 4 cut(s) 176, 189, 243, 300
StuI AGGCCT 1 cut(s) 464
StyD4I CCNGG 3 cut(s) 164, 303, 607
StyI CCWWGG 2 cut(s) 45, 215
TaaI ACNGT 2 cut(s) 115, 293
TaqI TCGA 3 cut(s) 171, 238, 467
TasI AATT 3 cut(s) 152, 269, 506
TatI WGTACW 2 cut(s) 579, 630
TauI GCSGC 3 cut(s) 263, 447, 494
Tru1I TTAA 2 cut(s) 486, 645
Tru9I TTAA 2 cut(s) 486, 645
TscAI CASTG 3 cut(s) 118, 204, 659
TseI GCWGC 3 cut(s) 77, 585, 693
TspDTI ATGAA 1 cut(s) 26
TspGWI ACGGA 1 cut(s) 418
TspRI CASTG 3 cut(s) 118, 204, 659
Van91I CCANNNNNTGG 2 cut(s) 199, 221
VneI GTGCAC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 1 cut(s) 269
XceI RCATGY 3 cut(s) 77, 315, 618
XspI CTAG 4 cut(s) 176, 189, 243, 300
ZrmI AGTACT 2 cut(s) 581, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.