Prupe.3G148300_v2.0.a1

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000594
Physical Location & Seq
Reverse (-)
16213839 .. 16214957
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G148300.1

Sequence Viewer

Length: 747 bp
ATGATGATGATGAAGAGCCAAGCAGCTCTCCTCGGCCTCACCACCTTGGCCATCCTCTTCTTCTCAGGTGCACATGCAGCTAAAATCACTTTCACAAACAAATGTTCCTACACTGTCTGGCCAGGAACCCTAACCGGTGACCAAAAACCTCAATTATCACTAACCGGGTTCGAGTTAGCAACCGGAATTAGCAACTCTGTGGACGCTCCGTCCCCATGGTCCGGTCGCTTCTTTGGCCGAACCAGGTGCTCCACGGACGCGTCAGGAAAGTTCTCTTGTGCCACAGCAGATTGTGGCTCTGGCCAAGTCTCATGCAACGGTAACGGCGCAGTTCCGCCAGCTACATTAGTAGAAATCACTATTGCTGAGAACGGGGGTCAAGATTTCTACGATGTTAGTCTTGTTGACGGCTTCAACTTGCCTATGGCCGTGGCTCCACAAGGCGGCACCGGCGAGTGTAAGGCCTCAACTTGCCCTGCCGATGTTAACGCGGTGTGCCCGGCCGAGTTACAAGTGAAGGGATCTGATGGAAGCGTAATTGCATGCAAGAGCGCTTGCTTAGCACTCAACCAGCCACAATACTGTTGCACTCCCCCTAACGACAAGCCGGAGACATGCCCTCCCACTGAGTACTCTAAGATCTTCAAGGACCAGTGCCCTCAAGCTTATAGCTATGCTTATGATGACAAGAGCAGCACCTTTACATGCAGTGCTAGACCTGACTACCTCATCACGTTCTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

249

Amino Acids

26.04

Weight (kDa)

4.83

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AccII CGCG 2 cut(s) 260, 491
AciI CCGC 3 cut(s) 335, 444, 491
AclWI GGATC 1 cut(s) 529
AcoI YGGCCR 6 cut(s) 48, 119, 235, 301, 426, 501
AfaI GTAC 1 cut(s) 632
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 2 cut(s) 221, 443
AflIII ACRYGT 1 cut(s) 258
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 2 cut(s) 415, 646
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 2 cut(s) 121, 242
AluBI AGCT 5 cut(s) 26, 80, 341, 665, 672
AluI AGCT 5 cut(s) 26, 80, 341, 665, 672
Alw21I GWGCWC 2 cut(s) 73, 251
Alw26I GTCTC 2 cut(s) 313, 605
Alw44I GTGCAC 1 cut(s) 69
AlwI GGATC 1 cut(s) 529
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 8 cut(s) 34, 48, 119, 235, 301, 426, 462, 501
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 23, 77, 693
AsiGI ACCGGT 1 cut(s) 134
AspLEI GCGC 2 cut(s) 329, 554
AspS9I GGNCC 2 cut(s) 219, 649
AsuC2I CCSGG 2 cut(s) 166, 500
AsuHPI GGTGA 2 cut(s) 31, 149
AvaII GGWCC 2 cut(s) 219, 649
BaeGI GKGCMC 3 cut(s) 73, 500, 659
BalI TGGCCA 3 cut(s) 50, 121, 303
BanI GGYRCC 1 cut(s) 446
Bbv12I GWGCWC 2 cut(s) 73, 251
BbvI GCAGC 3 cut(s) 35, 89, 705
BccI CCATC 2 cut(s) 59, 521
BceAI ACGGC 3 cut(s) 340, 413, 424
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 2 cut(s) 123, 244
BcnI CCSGG 2 cut(s) 166, 500
BcoDI GTCTC 2 cut(s) 313, 605
BfaI CTAG 1 cut(s) 714
BfoI RGCGCY 1 cut(s) 555
BglII AGATCT 1 cut(s) 639
BisI GCNGC 4 cut(s) 24, 78, 445, 694
BlpI GCTNAGC 1 cut(s) 559
BlsI GCNGC 4 cut(s) 25, 79, 446, 695
BmcAI AGTACT 1 cut(s) 632
Bme1390I CCNGG 4 cut(s) 123, 166, 244, 500
Bme18I GGWCC 2 cut(s) 219, 649
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 219, 649
BmiI GGNNCC 3 cut(s) 127, 435, 448
BmrFI CCNGG 4 cut(s) 123, 166, 244, 500
Bpu1102I GCTNAGC 1 cut(s) 559
BpuEI CTTGAG 1 cut(s) 645
BpuMI CCSGG 2 cut(s) 166, 500
BsaJI CCNNGG 5 cut(s) 31, 45, 215, 252, 429
BsaWI WCCGGW 3 cut(s) 134, 182, 221
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 443
Bse118I RCCGGY 2 cut(s) 134, 449
Bse1I ACTGG 1 cut(s) 652
BseBI CCWGG 2 cut(s) 123, 244
BseDI CCNNGG 5 cut(s) 31, 45, 215, 252, 429
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 2 cut(s) 221, 443
BseMII CTCAG 3 cut(s) 78, 357, 618
BseNI ACTGG 1 cut(s) 652
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 3 cut(s) 73, 500, 659
BseX3I CGGCCG 1 cut(s) 501
BseXI GCAGC 3 cut(s) 35, 89, 705
Bsh1236I CGCG 2 cut(s) 260, 491
Bsh1285I CGRYCG 2 cut(s) 226, 504
BshFI GGCC 8 cut(s) 36, 50, 121, 237, 303, 428, 464, 503
BshNI GGYRCC 1 cut(s) 446
BshTI ACCGGT 1 cut(s) 134
BsiEI CGRYCG 2 cut(s) 226, 504
BsiHKAI GWGCWC 2 cut(s) 73, 251
BsiSI CCGG 7 cut(s) 135, 165, 183, 222, 450, 500, 608
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 221, 443
BsmAI GTCTC 2 cut(s) 313, 605
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 8 cut(s) 36, 50, 121, 237, 303, 428, 464, 503
Bsp1286I GDGCHC 4 cut(s) 73, 251, 500, 659
Bsp143I GATC 2 cut(s) 521, 639
Bsp1720I GCTNAGC 1 cut(s) 559
Bsp19I CCATGG 1 cut(s) 215
BspACI CCGC 3 cut(s) 335, 444, 491
BspANI GGCC 8 cut(s) 36, 50, 121, 237, 303, 428, 464, 503
BspCNI CTCAG 3 cut(s) 77, 358, 619
BspFNI CGCG 2 cut(s) 260, 491
BspLI GGNNCC 3 cut(s) 127, 435, 448
BspPI GGATC 1 cut(s) 529
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 446
BsrFI RCCGGY 2 cut(s) 134, 449
BsrI ACTGG 1 cut(s) 652
BssAI RCCGGY 2 cut(s) 134, 449
BssECI CCNNGG 5 cut(s) 31, 45, 215, 252, 429
BssMI GATC 2 cut(s) 521, 639
BssT1I CCWWGG 2 cut(s) 45, 215
Bst2UI CCWGG 2 cut(s) 123, 244
Bst4CI ACNGT 3 cut(s) 115, 320, 584
Bst6I CTCTTC 2 cut(s) 8, 62
BstC8I GCNNGC 3 cut(s) 339, 544, 556
BstDEI CTNAG 5 cut(s) 64, 366, 559, 627, 636
BstDSI CCRYGG 3 cut(s) 215, 252, 429
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 1 cut(s) 51
BstFNI CGCG 2 cut(s) 260, 491
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 2 cut(s) 329, 554
BstKTI GATC 2 cut(s) 524, 642
BstMAI GTCTC 2 cut(s) 313, 605
BstMBI GATC 2 cut(s) 521, 639
BstMCI CGRYCG 2 cut(s) 226, 504
BstMWI GCNNNNNNNGC 4 cut(s) 77, 234, 450, 560
BstNI CCWGG 2 cut(s) 123, 244
BstNSI RCATGY 4 cut(s) 77, 546, 618, 708
BstPI GGTNACC 1 cut(s) 137
BstSCI CCNGG 4 cut(s) 121, 164, 242, 498
BstSLI GKGCMC 3 cut(s) 73, 500, 659
BstUI CGCG 2 cut(s) 260, 491
BstV1I GCAGC 3 cut(s) 35, 89, 705
BstX2I RGATCY 2 cut(s) 521, 639
BstYI RGATCY 2 cut(s) 521, 639
BstZI CGGCCG 1 cut(s) 501
BsuRI GGCC 8 cut(s) 36, 50, 121, 237, 303, 428, 464, 503
BtgI CCRYGG 3 cut(s) 215, 252, 429
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 4 cut(s) 111, 624, 659, 715
Cac8I GCNNGC 3 cut(s) 339, 544, 556
CfoI GCGC 2 cut(s) 329, 554
Cfr10I RCCGGY 2 cut(s) 134, 449
Cfr13I GGNCC 2 cut(s) 219, 649
CseI GACGC 3 cut(s) 212, 249, 266
CsiI ACCWGGT 1 cut(s) 242
Csp6I GTAC 1 cut(s) 631
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 6 cut(s) 74, 216, 312, 543, 615, 705
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 5 cut(s) 64, 366, 559, 627, 636
DpnI GATC 2 cut(s) 523, 641
DpnII GATC 2 cut(s) 521, 639
DriI GACNNNNNGTC 1 cut(s) 208
EaeI YGGCCR 6 cut(s) 48, 119, 235, 301, 426, 501
EagI CGGCCG 1 cut(s) 501
Eam1104I CTCTTC 2 cut(s) 8, 62
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 2 cut(s) 8, 62
EciI GGCGGA 1 cut(s) 324
EclXI CGGCCG 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 45, 215
Eco147I AGGCCT 1 cut(s) 464
Eco47I GGWCC 2 cut(s) 219, 649
Eco47III AGCGCT 1 cut(s) 553
Eco52I CGGCCG 1 cut(s) 501
Eco91I GGTNACC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 121, 242
EcoT14I CCWWGG 2 cut(s) 45, 215
ErhI CCWWGG 2 cut(s) 45, 215
FaeI CATG 6 cut(s) 77, 219, 315, 546, 618, 708
FaqI GGGAC 1 cut(s) 196
FatI CATG 6 cut(s) 73, 215, 311, 542, 614, 704
Fnu4HI GCNGC 4 cut(s) 24, 78, 445, 694
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 4 cut(s) 24, 78, 445, 694
FspBI CTAG 1 cut(s) 714
GlaI GCGC 2 cut(s) 328, 553
GluI GCNGC 4 cut(s) 24, 78, 445, 694
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 8 cut(s) 36, 50, 121, 237, 303, 428, 464, 503
HapII CCGG 7 cut(s) 135, 165, 183, 222, 450, 500, 608
HgaI GACGC 3 cut(s) 212, 249, 266
HhaI GCGC 2 cut(s) 329, 554
Hin1II CATG 6 cut(s) 77, 219, 315, 546, 618, 708
Hin6I GCGC 2 cut(s) 327, 552
HinP1I GCGC 2 cut(s) 327, 552
HincII GTYRAC 2 cut(s) 406, 487
HindII GTYRAC 2 cut(s) 406, 487
HindIII AAGCTT 1 cut(s) 663
HpaI GTTAAC 1 cut(s) 487
HpaII CCGG 7 cut(s) 135, 165, 183, 222, 450, 500, 608
HphI GGTGA 2 cut(s) 31, 149
Hpy166II GTNNAC 4 cut(s) 71, 202, 406, 487
Hpy188I TCNGA 1 cut(s) 526
Hpy188III TCNNGA 2 cut(s) 264, 380
Hpy8I GTNNAC 4 cut(s) 71, 202, 406, 487
HpyAV CCTTC 1 cut(s) 511
HpyCH4III ACNGT 3 cut(s) 115, 320, 584
HpyCH4IV ACGT 1 cut(s) 734
HpyCH4V TGCA 7 cut(s) 71, 77, 315, 542, 546, 588, 708
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 234, 450, 560
HpyF3I CTNAG 5 cut(s) 64, 366, 559, 627, 636
HpySE526I ACGT 1 cut(s) 734
Hsp92II CATG 6 cut(s) 77, 219, 315, 546, 618, 708
HspAI GCGC 2 cut(s) 327, 552
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 2 cut(s) 521, 639
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 3 cut(s) 211, 254, 439
Lsp1109I GCAGC 3 cut(s) 35, 89, 705
MabI ACCWGGT 1 cut(s) 242
MaeI CTAG 1 cut(s) 714
MaeII ACGT 1 cut(s) 734
MaeIII GTNAC 3 cut(s) 137, 320, 507
MalI GATC 2 cut(s) 523, 641
MboI GATC 2 cut(s) 521, 639
MboII GAAGA 4 cut(s) 25, 49, 52, 634
MflI RGATCY 2 cut(s) 521, 639
MhlI GDGCHC 4 cut(s) 73, 251, 500, 659
MlsI TGGCCA 3 cut(s) 50, 121, 303
MluCI AATT 3 cut(s) 152, 186, 537
MluI ACGCGT 1 cut(s) 258
MluNI TGGCCA 3 cut(s) 50, 121, 303
MnlI CCTC 8 cut(s) 41, 47, 65, 159, 475, 630, 669, 737
Mox20I TGGCCA 3 cut(s) 50, 121, 303
MscI TGGCCA 3 cut(s) 50, 121, 303
MseI TTAA 1 cut(s) 486
Msp20I TGGCCA 3 cut(s) 50, 121, 303
MspI CCGG 7 cut(s) 135, 165, 183, 222, 450, 500, 608
MspR9I CCNGG 4 cut(s) 123, 166, 244, 500
MvaI CCWGG 2 cut(s) 123, 244
MvnI CGCG 2 cut(s) 260, 491
MwoI GCNNNNNNNGC 4 cut(s) 77, 234, 450, 560
NciI CCSGG 2 cut(s) 166, 500
NcoI CCATGG 1 cut(s) 215
NdeII GATC 2 cut(s) 521, 639
NlaIII CATG 6 cut(s) 77, 219, 315, 546, 618, 708
NlaIV GGNNCC 3 cut(s) 127, 435, 448
NmeAIII GCCGAG 2 cut(s) 12, 529
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 4 cut(s) 77, 546, 618, 708
PaeI GCATGC 1 cut(s) 546
PceI AGGCCT 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 4 cut(s) 25, 79, 446, 695
Psp6I CCWGG 2 cut(s) 121, 242
PspEI GGTNACC 1 cut(s) 137
PspGI CCWGG 2 cut(s) 121, 242
PspN4I GGNNCC 3 cut(s) 127, 435, 448
PspPI GGNCC 2 cut(s) 219, 649
PsuI RGATCY 2 cut(s) 521, 639
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 4 cut(s) 24, 78, 445, 694
Sau3AI GATC 2 cut(s) 521, 639
Sau96I GGNCC 2 cut(s) 219, 649
ScaI AGTACT 1 cut(s) 632
ScrFI CCNGG 4 cut(s) 123, 166, 244, 500
SduI GDGCHC 4 cut(s) 73, 251, 500, 659
SexAI ACCWGGT 1 cut(s) 242
SgrAI CRCCGGYG 1 cut(s) 449
SinI GGWCC 2 cut(s) 219, 649
SmlI CTYRAG 1 cut(s) 660
SmoI CTYRAG 1 cut(s) 660
SphI GCATGC 1 cut(s) 546
Sse9I AATT 3 cut(s) 152, 186, 537
SseBI AGGCCT 1 cut(s) 464
SsiI CCGC 3 cut(s) 335, 444, 491
SspMI CTAG 1 cut(s) 714
StuI AGGCCT 1 cut(s) 464
StyD4I CCNGG 4 cut(s) 121, 164, 242, 498
StyI CCWWGG 2 cut(s) 45, 215
TaaI ACNGT 3 cut(s) 115, 320, 584
TaiI ACGT 1 cut(s) 737
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 152, 186, 537
TatI WGTACW 1 cut(s) 630
TauI GCSGC 1 cut(s) 447
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 4 cut(s) 118, 631, 659, 715
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 3 cut(s) 23, 77, 693
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 26
TspGWI ACGGA 2 cut(s) 198, 269
TspRI CASTG 4 cut(s) 118, 631, 659, 715
VneI GTGCAC 1 cut(s) 69
VpaK11BI GGWCC 2 cut(s) 219, 649
XceI RCATGY 4 cut(s) 77, 546, 618, 708
XspI CTAG 1 cut(s) 714
ZrmI AGTACT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.