FvH4_6g05880

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000594
Physical Location & Seq
Forward (+)
3343580 .. 3344726
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05880.t1

Sequence Viewer

Length: 753 bp
ATGATGAAAATCCAAGTACTCCTCTACCTTACCTTCGCCTGCTTCGAATTCCTTTTCTTTCCAGGCGCACTTTCGGCCAGAATTTCCATCACAAACAAGTGCCCCTTCACGGTCTGGCCAGCAACCCAAACTTCTGATCGCAAACCTCCCTTAGCATTGCCGAGTAACGTATTGGCACCCCAAGCTAGCACCACCGTGGTCACTCCGGTTCCATGGAATGGCCGCTTCTGGGGCCGTACCAACTGCTTCACGAACAATGCCGGCAAATTCACTTGTGCTCCACCAGGGGATTGCGCATCCGGTCAGCAATCATGCAACGGAAATGGAGGAGTTCCTCCAGCCACGTTGGTGGAATTTAATATCGCAGCAGGCGGGGGTCAAGATTACTACGATGTTAGTCTTGTTGACGGCTTCAACTTGCCCATGTCCGTGGCCGCTCAAGGCGGTCATAAGCCCGGGGATTGTCGGACCTCTACCTGCAGAGCCAACGTAAACGCTAATTGTCCGAGTGAACTACAAGTAAAGGGGGCTGGCGGGAGCGTGATCGGCTGCATGAGTGCGTGCACCAAGTTCCATGAGCCCAGGTATTGCTGCACTGGACCTAATGATAAGCCAGCGACATGTCCTCCTACAGACTACTCTAAAAAGTTTAGTCAACTATGCCCTGAGGCTTACAGCTACGCTTATGATGACAAGAAAGGCACATTCACTTGCTCCGGGGGACCTAACTACGCTATTACTTTCTGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

251

Amino Acids

26.57

Weight (kDa)

8.27

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 250 2.6e-72 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 295
Acc36I ACCTGC 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 218
AccBSI CCGCTC 1 cut(s) 437
AciI CCGC 5 cut(s) 223, 372, 435, 444, 534
AcoI YGGCCR 4 cut(s) 75, 116, 220, 432
AcsI RAATTY 4 cut(s) 47, 81, 266, 353
AfaI GTAC 2 cut(s) 18, 238
AfiI CCNNNNNNNGG 3 cut(s) 109, 218, 229
AflIII ACRYGT 1 cut(s) 620
AgsI TTSAA 1 cut(s) 415
AjnI CCWGG 3 cut(s) 61, 283, 581
AleI CACNNNNGTG 2 cut(s) 194, 347
AluBI AGCT 2 cut(s) 185, 678
AluI AGCT 2 cut(s) 185, 678
Alw21I GWGCWC 2 cut(s) 280, 566
Alw44I GTGCAC 1 cut(s) 562
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 5 cut(s) 75, 116, 220, 232, 432
ApaLI GTGCAC 1 cut(s) 562
ApeKI GCWGC 3 cut(s) 365, 549, 591
ApoI RAATTY 4 cut(s) 47, 81, 266, 353
AspLEI GCGC 2 cut(s) 68, 296
AspS9I GGNCC 4 cut(s) 232, 468, 599, 722
AsuC2I CCSGG 3 cut(s) 456, 457, 718
AsuII TTCGAA 1 cut(s) 45
AsuNHI GCTAGC 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 3 cut(s) 468, 599, 722
AxyI CCTNAGG 1 cut(s) 666
BaeGI GKGCMC 2 cut(s) 104, 566
BalI TGGCCA 1 cut(s) 118
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 582
Bbv12I GWGCWC 2 cut(s) 280, 566
BbvI GCAGC 3 cut(s) 377, 536, 578
BccI CCATC 1 cut(s) 95
BceAI ACGGC 2 cut(s) 219, 424
BciT130I CCWGG 3 cut(s) 63, 285, 583
BcnI CCSGG 3 cut(s) 456, 457, 718
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 2 cut(s) 478, 630
BfuAI ACCTGC 1 cut(s) 485
BisI GCNGC 5 cut(s) 223, 366, 435, 550, 592
BlsI GCNGC 5 cut(s) 224, 367, 436, 551, 593
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 6 cut(s) 63, 285, 456, 457, 583, 718
Bme18I GGWCC 3 cut(s) 468, 599, 722
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 4 cut(s) 232, 468, 599, 722
BmiI GGNNCC 4 cut(s) 177, 210, 233, 723
BmrFI CCNGG 6 cut(s) 63, 285, 456, 457, 583, 718
BmsI GCATC 1 cut(s) 305
BmtI GCTAGC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 321
Bpu10I CCTNAGC 1 cut(s) 151
Bpu14I TTCGAA 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 423
BpuMI CCSGG 3 cut(s) 456, 457, 718
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 8 cut(s) 195, 212, 284, 429, 455, 456, 581, 717
BsaWI WCCGGW 2 cut(s) 205, 299
BsaXI ACNNNNNCTCC 4 cut(s) 262, 292, 610, 640
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 218, 229
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 601
Bse21I CCTNAGG 1 cut(s) 666
Bse3DI GCAATG 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 3 cut(s) 63, 285, 583
BseDI CCNNGG 8 cut(s) 195, 212, 284, 429, 455, 456, 581, 717
BseGI GGATG 1 cut(s) 296
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 109, 218, 229
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 2 cut(s) 11, 342
BseSI GKGCMC 2 cut(s) 104, 566
BseXI GCAGC 3 cut(s) 377, 536, 578
BsgI GTGCAG 1 cut(s) 577
BshFI GGCC 5 cut(s) 77, 118, 222, 234, 434
BshNI GGYRCC 1 cut(s) 175
BsiHKAI GWGCWC 2 cut(s) 280, 566
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 5 cut(s) 206, 261, 300, 456, 717
BslFI GGGAC 1 cut(s) 735
BslI CCNNNNNNNGG 3 cut(s) 109, 218, 229
BsmFI GGGAC 1 cut(s) 735
BsnI GGCC 5 cut(s) 77, 118, 222, 234, 434
BsoBI CYCGRG 1 cut(s) 455
Bsp119I TTCGAA 1 cut(s) 45
Bsp1286I GDGCHC 4 cut(s) 104, 280, 566, 582
Bsp143I GATC 2 cut(s) 136, 543
Bsp19I CCATGG 1 cut(s) 212
BspACI CCGC 5 cut(s) 223, 372, 435, 444, 534
BspANI GGCC 5 cut(s) 77, 118, 222, 234, 434
BspCNI CTCAG 1 cut(s) 658
BspLI GGNNCC 4 cut(s) 177, 210, 233, 723
BspMAI CTGCAG 1 cut(s) 482
BspMI ACCTGC 1 cut(s) 485
BspOI GCTAGC 1 cut(s) 189
BspT104I TTCGAA 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 175
BsrBI CCGCTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 8 cut(s) 195, 212, 284, 429, 455, 456, 581, 717
BssMI GATC 2 cut(s) 136, 543
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 3 cut(s) 63, 285, 583
Bst4CI ACNGT 2 cut(s) 112, 196
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 8 cut(s) 40, 120, 187, 262, 370, 532, 562, 615
BstDEI CTNAG 2 cut(s) 151, 666
BstDSI CCRYGG 3 cut(s) 195, 212, 429
BstF5I GGATG 1 cut(s) 296
BstHHI GCGC 2 cut(s) 68, 296
BstKTI GATC 2 cut(s) 139, 546
BstMBI GATC 2 cut(s) 136, 543
BstMWI GCNNNNNNNGC 4 cut(s) 74, 182, 231, 546
BstNI CCWGG 3 cut(s) 63, 285, 583
BstNSI RCATGY 1 cut(s) 624
BstSCI CCNGG 6 cut(s) 61, 283, 454, 455, 581, 716
BstSFI CTRYAG 2 cut(s) 478, 630
BstSLI GKGCMC 2 cut(s) 104, 566
BstV1I GCAGC 3 cut(s) 377, 536, 578
BstXI CCANNNNNNTGG 2 cut(s) 349, 430
Bsu36I CCTNAGG 1 cut(s) 666
BsuRI GGCC 5 cut(s) 77, 118, 222, 234, 434
BtgI CCRYGG 3 cut(s) 195, 212, 429
BtsCI GGATG 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 594
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 8 cut(s) 40, 120, 187, 262, 370, 532, 562, 615
CfoI GCGC 2 cut(s) 68, 296
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 4 cut(s) 232, 468, 599, 722
Cfr9I CCCGGG 1 cut(s) 455
Csp6I GTAC 2 cut(s) 17, 237
CviAII CATG 6 cut(s) 213, 312, 424, 553, 575, 621
CviQI GTAC 2 cut(s) 17, 237
DdeI CTNAG 2 cut(s) 151, 666
DpnI GATC 2 cut(s) 138, 545
DpnII GATC 2 cut(s) 136, 543
EaeI YGGCCR 4 cut(s) 75, 116, 220, 432
Eco130I CCWWGG 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 3 cut(s) 468, 599, 722
Eco81I CCTNAGG 1 cut(s) 666
Eco88I CYCGRG 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 722
EcoRI GAATTC 1 cut(s) 47
EcoRII CCWGG 3 cut(s) 61, 283, 581
EcoT14I CCWWGG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 6 cut(s) 216, 315, 427, 556, 578, 624
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 1 cut(s) 735
FatI CATG 6 cut(s) 212, 311, 423, 552, 574, 620
FauI CCCGC 2 cut(s) 365, 527
Fnu4HI GCNGC 5 cut(s) 223, 366, 435, 550, 592
FokI GGATG 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 5 cut(s) 223, 366, 435, 550, 592
FspBI CTAG 1 cut(s) 186
FspI TGCGCA 1 cut(s) 295
GlaI GCGC 2 cut(s) 67, 295
GluI GCNGC 5 cut(s) 223, 366, 435, 550, 592
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 5 cut(s) 77, 118, 222, 234, 434
HapII CCGG 5 cut(s) 206, 261, 300, 456, 717
HhaI GCGC 2 cut(s) 68, 296
Hin1II CATG 6 cut(s) 216, 315, 427, 556, 578, 624
Hin6I GCGC 2 cut(s) 66, 294
HinP1I GCGC 2 cut(s) 66, 294
HincII GTYRAC 2 cut(s) 406, 656
HindII GTYRAC 2 cut(s) 406, 656
HpaII CCGG 5 cut(s) 206, 261, 300, 456, 717
Hpy166II GTNNAC 5 cut(s) 406, 493, 512, 564, 656
Hpy188I TCNGA 3 cut(s) 136, 468, 507
Hpy188III TCNNGA 2 cut(s) 250, 380
Hpy8I GTNNAC 5 cut(s) 406, 493, 512, 564, 656
HpyAV CCTTC 2 cut(s) 43, 115
HpyCH4III ACNGT 2 cut(s) 112, 196
HpyCH4IV ACGT 3 cut(s) 168, 344, 489
HpyCH4V TGCA 5 cut(s) 315, 480, 552, 564, 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 182, 231, 546
HpyF3I CTNAG 2 cut(s) 151, 666
HpySE526I ACGT 3 cut(s) 168, 344, 489
Hsp92II CATG 6 cut(s) 216, 315, 427, 556, 578, 624
HspAI GCGC 2 cut(s) 66, 294
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 136, 543
LmnI GCTCC 3 cut(s) 283, 537, 719
Lsp1109I GCAGC 3 cut(s) 377, 536, 578
LweI GCATC 1 cut(s) 305
MaeI CTAG 1 cut(s) 186
MaeII ACGT 3 cut(s) 168, 344, 489
MaeIII GTNAC 2 cut(s) 164, 199
MalI GATC 2 cut(s) 138, 545
MbiI CCGCTC 1 cut(s) 437
MboI GATC 2 cut(s) 136, 543
MhlI GDGCHC 4 cut(s) 104, 280, 566, 582
MlsI TGGCCA 1 cut(s) 118
MluCI AATT 5 cut(s) 47, 81, 266, 353, 499
MluNI TGGCCA 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 446
MnlI CCTC 7 cut(s) 32, 156, 320, 345, 481, 636, 661
Mox20I TGGCCA 1 cut(s) 118
MroNI GCCGGC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 118
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 3 cut(s) 194, 347, 428
Msp20I TGGCCA 1 cut(s) 118
MspI CCGG 5 cut(s) 206, 261, 300, 456, 717
MspR9I CCNGG 6 cut(s) 63, 285, 456, 457, 583, 718
MvaI CCWGG 3 cut(s) 63, 285, 583
MwoI GCNNNNNNNGC 4 cut(s) 74, 182, 231, 546
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 3 cut(s) 456, 457, 718
NcoI CCATGG 1 cut(s) 212
NdeII GATC 2 cut(s) 136, 543
NgoMIV GCCGGC 1 cut(s) 260
NheI GCTAGC 1 cut(s) 185
NlaIII CATG 6 cut(s) 216, 315, 427, 556, 578, 624
NlaIV GGNNCC 4 cut(s) 177, 210, 233, 723
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 199
NsbI TGCGCA 1 cut(s) 295
NspI RCATGY 1 cut(s) 624
NspV TTCGAA 1 cut(s) 45
OliI CACNNNNGTG 2 cut(s) 194, 347
PciI ACATGT 1 cut(s) 620
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdiI GCCGGC 1 cut(s) 262
PflMI CCANNNNNTGG 1 cut(s) 218
PkrI GCNGC 5 cut(s) 224, 367, 436, 551, 593
PpuMI RGGWCCY 1 cut(s) 722
PscI ACATGT 1 cut(s) 620
Psp5II RGGWCCY 1 cut(s) 722
Psp6I CCWGG 3 cut(s) 61, 283, 581
PspGI CCWGG 3 cut(s) 61, 283, 581
PspN4I GGNNCC 4 cut(s) 177, 210, 233, 723
PspPI GGNCC 4 cut(s) 232, 468, 599, 722
PspPPI RGGWCCY 1 cut(s) 722
PstI CTGCAG 1 cut(s) 482
RsaI GTAC 2 cut(s) 18, 238
RsaNI GTAC 2 cut(s) 17, 237
RseI CAYNNNNRTG 3 cut(s) 194, 347, 428
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 5 cut(s) 223, 366, 435, 550, 592
Sau3AI GATC 2 cut(s) 136, 543
Sau96I GGNCC 4 cut(s) 232, 468, 599, 722
ScaI AGTACT 1 cut(s) 18
ScrFI CCNGG 6 cut(s) 63, 285, 456, 457, 583, 718
SduI GDGCHC 4 cut(s) 104, 280, 566, 582
SfaNI GCATC 1 cut(s) 305
SfcI CTRYAG 2 cut(s) 478, 630
SfuI TTCGAA 1 cut(s) 45
SinI GGWCC 3 cut(s) 468, 599, 722
SmaI CCCGGG 1 cut(s) 457
SmiMI CAYNNNNRTG 3 cut(s) 194, 347, 428
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
Sse9I AATT 5 cut(s) 47, 81, 266, 353, 499
SsiI CCGC 5 cut(s) 223, 372, 435, 444, 534
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 6 cut(s) 61, 283, 454, 455, 581, 716
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 2 cut(s) 112, 196
TaiI ACGT 3 cut(s) 171, 347, 492
TaqI TCGA 1 cut(s) 45
TasI AATT 5 cut(s) 47, 81, 266, 353, 499
TatI WGTACW 1 cut(s) 16
TauI GCSGC 2 cut(s) 225, 437
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 3 cut(s) 365, 549, 591
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 2 cut(s) 333, 418
TspMI CCCGGG 1 cut(s) 455
TspRI CASTG 1 cut(s) 601
Van91I CCANNNNNTGG 1 cut(s) 218
VneI GTGCAC 1 cut(s) 562
VpaK11BI GGWCC 3 cut(s) 468, 599, 722
XapI RAATTY 4 cut(s) 47, 81, 266, 353
XceI RCATGY 1 cut(s) 624
XmaI CCCGGG 1 cut(s) 455
XspI CTAG 1 cut(s) 186
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.