RLG00000024224

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000594
Physical Location & Seq
Reverse (-)
33261320 .. 33262448
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024224

Sequence Viewer

Length: 738 bp
ATGAAGATGAACACCCAAGTACTCCTCAGCCTCACCTTGGCCATATTCTTCGCAGGTGCACATGCGGCTACGATCACCTTCACCAACAACTGCCCCTACACCGTATGGCCAGGAACCCTCACCTCCGACCAACAACCCCAACTATCCACCACCGGCTTCGAGCTAGCCCAGGGAGCCAAAAAAGACGTCACCACTCCAGTTCCATGGAAAGGCCGCTTCTGGGCCCGAACCAGATGCTCCACCGCTGCCGACGGAAAGTTCTCCTGCGCCACAGCTGACTGCGGCTCCGGCCAGGTCACATGCAACGGCAACGGCGCAGTCCCACCGGCAACTCTAGTCGAAATCAACATTGCAGCTGACGGCGGTCAGGACTTCTACGACGTCAGCCTGGTCGACGGCTTCAACTTGCCCGTGTCCGTGGCCCCGCAGGGTGGAACCGGCGACTGCAAGCCCTCTTCATGTCCGGCCGACGTGAACGCCGTCTGTCCTCCGGAGCTGCAAGTGAAGGCCGACGACGGGACCGTGATTGCCTGCAAGAGCGCTTGTCTGGCGTTCAACGAGCCAAAGTACTGTTGCACACCTCCCAATAACACTCCCGAAACATGTCCTCCCACAAACTACTCTCAGATCTTTAAGAATCAGTGCCCTCAGGCTTATAGCTACGCTTACGATGACAAGAGCAGCACGTTTACATGCTTCGGTGGACCTAACTACGCCATTACATTCTGTCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

246

Amino Acids

25.88

Weight (kDa)

4.9

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 244 1e-80 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
AatII GACGTC 2 cut(s) 189, 384
Acc36I ACCTGC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 393
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 6 cut(s) 65, 214, 243, 282, 363, 425
AcoI YGGCCR 4 cut(s) 39, 107, 289, 465
AcyI GRCGYC 2 cut(s) 186, 381
AfaI GTAC 2 cut(s) 21, 569
AfeI AGCGCT 1 cut(s) 541
AfiI CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
AflIII ACRYGT 1 cut(s) 602
AgsI TTSAA 2 cut(s) 403, 556
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 4 cut(s) 109, 168, 291, 387
AluBI AGCT 5 cut(s) 163, 275, 356, 496, 660
AluI AGCT 5 cut(s) 163, 275, 356, 496, 660
Alw21I GWGCWC 1 cut(s) 61
Alw44I GTGCAC 1 cut(s) 57
Aor13HI TCCGGA 1 cut(s) 490
Aor51HI AGCGCT 1 cut(s) 541
AoxI GGCC 8 cut(s) 39, 107, 211, 222, 289, 420, 465, 507
ApaI GGGCCC 1 cut(s) 226
ApaLI GTGCAC 1 cut(s) 57
ApeKI GCWGC 4 cut(s) 245, 353, 496, 681
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 3 cut(s) 269, 317, 542
AspS9I GGNCC 5 cut(s) 222, 223, 421, 519, 704
AsuHPI GGTGA 5 cut(s) 25, 67, 73, 112, 181
AsuNHI GCTAGC 1 cut(s) 163
AvaII GGWCC 2 cut(s) 519, 704
AxyI CCTNAGG 1 cut(s) 648
BaeGI GKGCMC 3 cut(s) 61, 226, 647
BalI TGGCCA 2 cut(s) 41, 109
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 61
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 4 cut(s) 232, 365, 483, 693
BceAI ACGGC 5 cut(s) 322, 328, 376, 412, 464
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 4 cut(s) 111, 170, 293, 389
BfaI CTAG 2 cut(s) 164, 335
BfoI RGCGCY 1 cut(s) 543
BfuAI ACCTGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 627
BisI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 682
BlsI GCNGC 7 cut(s) 67, 215, 247, 284, 355, 498, 683
BmcAI AGTACT 2 cut(s) 21, 569
Bme1390I CCNGG 4 cut(s) 111, 170, 293, 389
Bme18I GGWCC 2 cut(s) 519, 704
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 5 cut(s) 222, 223, 421, 519, 704
BmiI GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
BmrFI CCNGG 4 cut(s) 111, 170, 293, 389
BmsI GCATC 1 cut(s) 224
BmtI GCTAGC 1 cut(s) 167
BoxI GACNNNNGTC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 26
BsaHI GRCGYC 2 cut(s) 186, 381
BsaJI CCNNGG 5 cut(s) 36, 168, 169, 203, 417
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 4 cut(s) 269, 299, 592, 622
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
Bse118I RCCGGY 3 cut(s) 152, 325, 437
Bse1I ACTGG 1 cut(s) 197
Bse21I CCTNAGG 1 cut(s) 648
Bse3DI GCAATG 1 cut(s) 348
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 4 cut(s) 111, 170, 293, 389
BseDI CCNNGG 5 cut(s) 36, 168, 169, 203, 417
BseLI CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 3 cut(s) 40, 638, 662
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 14
BseSI GKGCMC 3 cut(s) 61, 226, 647
BseX3I CGGCCG 1 cut(s) 465
BseXI GCAGC 4 cut(s) 232, 365, 483, 693
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 8 cut(s) 41, 109, 213, 224, 291, 422, 467, 509
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 6 cut(s) 153, 288, 326, 438, 464, 491
BslFI GGGAC 2 cut(s) 305, 532
BslI CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
BsmFI GGGAC 2 cut(s) 305, 532
BsnI GGCC 8 cut(s) 41, 109, 213, 224, 291, 422, 467, 509
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 3 cut(s) 61, 226, 647
Bsp13I TCCGGA 1 cut(s) 490
Bsp143I GATC 2 cut(s) 72, 627
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 6 cut(s) 65, 214, 243, 282, 363, 425
BspANI GGCC 8 cut(s) 41, 109, 213, 224, 291, 422, 467, 509
BspCNI CTCAG 3 cut(s) 39, 637, 661
BspEI TCCGGA 1 cut(s) 490
BspLI GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
BspMI ACCTGC 1 cut(s) 44
BspOI GCTAGC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 348
BsrFI RCCGGY 3 cut(s) 152, 325, 437
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 3 cut(s) 152, 325, 437
BssECI CCNNGG 5 cut(s) 36, 168, 169, 203, 417
BssMI GATC 2 cut(s) 72, 627
BssNI GRCGYC 2 cut(s) 186, 381
BssT1I CCWWGG 2 cut(s) 36, 203
Bst2UI CCWGG 4 cut(s) 111, 170, 293, 389
Bst4CI ACNGT 3 cut(s) 103, 523, 572
Bst6I CTCTTC 1 cut(s) 460
BstACI GRCGYC 2 cut(s) 186, 381
BstC8I GCNNGC 3 cut(s) 165, 449, 532
BstDEI CTNAG 3 cut(s) 26, 624, 648
BstDSI CCRYGG 2 cut(s) 203, 417
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 3 cut(s) 269, 317, 542
BstKTI GATC 2 cut(s) 75, 630
BstMBI GATC 2 cut(s) 72, 627
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 4 cut(s) 65, 173, 288, 548
BstNI CCWGG 4 cut(s) 111, 170, 293, 389
BstNSI RCATGY 4 cut(s) 65, 303, 606, 696
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 4 cut(s) 109, 168, 291, 387
BstSLI GKGCMC 3 cut(s) 61, 226, 647
BstV1I GCAGC 4 cut(s) 232, 365, 483, 693
BstX2I RGATCY 1 cut(s) 627
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 1 cut(s) 627
BstZI CGGCCG 1 cut(s) 465
Bsu36I CCTNAGG 1 cut(s) 648
BsuRI GGCC 8 cut(s) 41, 109, 213, 224, 291, 422, 467, 509
BtgI CCRYGG 2 cut(s) 203, 417
BtrI CACGTC 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 647
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 3 cut(s) 165, 449, 532
CfoI GCGC 3 cut(s) 269, 317, 542
Cfr10I RCCGGY 3 cut(s) 152, 325, 437
Cfr13I GGNCC 5 cut(s) 222, 223, 421, 519, 704
Csp6I GTAC 2 cut(s) 20, 568
CviAII CATG 6 cut(s) 62, 204, 300, 459, 603, 693
CviQI GTAC 2 cut(s) 20, 568
DdeI CTNAG 3 cut(s) 26, 624, 648
DpnI GATC 2 cut(s) 74, 629
DpnII GATC 2 cut(s) 72, 627
EaeI YGGCCR 4 cut(s) 39, 107, 289, 465
EagI CGGCCG 1 cut(s) 465
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
EclXI CGGCCG 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 36, 203
Eco24I GRGCYC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 519, 704
Eco47III AGCGCT 1 cut(s) 541
Eco52I CGGCCG 1 cut(s) 465
Eco81I CCTNAGG 1 cut(s) 648
EcoRII CCWGG 4 cut(s) 109, 168, 291, 387
EcoT14I CCWWGG 2 cut(s) 36, 203
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 2 cut(s) 36, 203
FaeI CATG 6 cut(s) 65, 207, 303, 462, 606, 696
FaiI YATR 9 cut(s) 44, 63, 106, 205, 301, 460, 604, 657, 694
FaqI GGGAC 2 cut(s) 305, 532
FatI CATG 6 cut(s) 61, 203, 299, 458, 602, 692
FauI CCCGC 1 cut(s) 432
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 682
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 682
FspBI CTAG 2 cut(s) 164, 335
GlaI GCGC 3 cut(s) 268, 316, 541
GluI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 682
GsuI CTGGAG 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 8 cut(s) 41, 109, 213, 224, 291, 422, 467, 509
HapII CCGG 6 cut(s) 153, 288, 326, 438, 464, 491
HhaI GCGC 3 cut(s) 269, 317, 542
Hin1I GRCGYC 2 cut(s) 186, 381
Hin1II CATG 6 cut(s) 65, 207, 303, 462, 606, 696
Hin6I GCGC 3 cut(s) 267, 315, 540
HinP1I GCGC 3 cut(s) 267, 315, 540
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 1 cut(s) 637
HpaII CCGG 6 cut(s) 153, 288, 326, 438, 464, 491
HphI GGTGA 5 cut(s) 25, 67, 73, 112, 181
Hpy166II GTNNAC 5 cut(s) 59, 394, 475, 690, 704
Hpy188I TCNGA 2 cut(s) 127, 627
Hpy188III TCNNGA 3 cut(s) 368, 491, 596
Hpy8I GTNNAC 5 cut(s) 59, 394, 475, 690, 704
Hpy99I CGWCG 6 cut(s) 254, 383, 398, 473, 515, 518
HpyAV CCTTC 2 cut(s) 88, 499
HpyCH4III ACNGT 3 cut(s) 103, 523, 572
HpyCH4IV ACGT 4 cut(s) 186, 381, 471, 686
HpyCH4V TGCA 7 cut(s) 59, 303, 353, 447, 499, 534, 576
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 173, 288, 548
HpyF3I CTNAG 3 cut(s) 26, 624, 648
HpySE526I ACGT 4 cut(s) 186, 381, 471, 686
Hsp92I GRCGYC 2 cut(s) 186, 381
Hsp92II CATG 6 cut(s) 65, 207, 303, 462, 606, 696
HspAI GCGC 3 cut(s) 267, 315, 540
Kpn2I TCCGGA 1 cut(s) 490
Kzo9I GATC 2 cut(s) 72, 627
LmnI GCTCC 4 cut(s) 173, 242, 290, 493
Lsp1109I GCAGC 4 cut(s) 232, 365, 483, 693
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 164, 335
MaeII ACGT 4 cut(s) 186, 381, 471, 686
MaeIII GTNAC 2 cut(s) 187, 295
MalI GATC 2 cut(s) 74, 629
MboI GATC 2 cut(s) 72, 627
MboII GAAGA 3 cut(s) 16, 40, 447
MflI RGATCY 1 cut(s) 627
MhlI GDGCHC 3 cut(s) 61, 226, 647
MlsI TGGCCA 2 cut(s) 41, 109
MluNI TGGCCA 2 cut(s) 41, 109
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 9 cut(s) 35, 41, 128, 133, 463, 498, 591, 618, 657
Mox20I TGGCCA 2 cut(s) 41, 109
MroI TCCGGA 1 cut(s) 490
MscI TGGCCA 2 cut(s) 41, 109
MseI TTAA 1 cut(s) 633
Msp20I TGGCCA 2 cut(s) 41, 109
MspA1I CMGCKG 3 cut(s) 245, 275, 356
MspI CCGG 6 cut(s) 153, 288, 326, 438, 464, 491
MspR9I CCNGG 4 cut(s) 111, 170, 293, 389
MvaI CCWGG 4 cut(s) 111, 170, 293, 389
MwoI GCNNNNNNNGC 4 cut(s) 65, 173, 288, 548
NcoI CCATGG 1 cut(s) 203
NdeII GATC 2 cut(s) 72, 627
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 6 cut(s) 65, 207, 303, 462, 606, 696
NlaIV GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
NmuCI GTSAC 2 cut(s) 187, 295
NspI RCATGY 4 cut(s) 65, 303, 606, 696
PaqCI CACCTGC 1 cut(s) 44
PasI CCCWGGG 1 cut(s) 169
PciI ACATGT 1 cut(s) 602
PcsI WCGNNNNNNNCGW 2 cut(s) 477, 519
PfeI GAWTC 1 cut(s) 637
PkrI GCNGC 7 cut(s) 67, 215, 247, 284, 355, 498, 683
PscI ACATGT 1 cut(s) 602
PshAI GACNNNNGTC 1 cut(s) 363
Psp6I CCWGG 4 cut(s) 109, 168, 291, 387
PspGI CCWGG 4 cut(s) 109, 168, 291, 387
PspN4I GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 5 cut(s) 222, 223, 421, 519, 704
PsuI RGATCY 1 cut(s) 627
PvuII CAGCTG 2 cut(s) 275, 356
RsaI GTAC 2 cut(s) 21, 569
RsaNI GTAC 2 cut(s) 20, 568
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 682
Sau3AI GATC 2 cut(s) 72, 627
Sau96I GGNCC 5 cut(s) 222, 223, 421, 519, 704
ScaI AGTACT 2 cut(s) 21, 569
ScrFI CCNGG 4 cut(s) 111, 170, 293, 389
SduI GDGCHC 3 cut(s) 61, 226, 647
SfaNI GCATC 1 cut(s) 224
SinI GGWCC 2 cut(s) 519, 704
SsiI CCGC 6 cut(s) 65, 214, 243, 282, 363, 425
SspMI CTAG 2 cut(s) 164, 335
StyD4I CCNGG 4 cut(s) 109, 168, 291, 387
StyI CCWWGG 2 cut(s) 36, 203
TaaI ACNGT 3 cut(s) 103, 523, 572
TaiI ACGT 4 cut(s) 189, 384, 474, 689
TaqI TCGA 3 cut(s) 159, 339, 393
TatI WGTACW 2 cut(s) 19, 567
TauI GCSGC 3 cut(s) 68, 216, 285
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 1 cut(s) 647
TseFI GTSAC 2 cut(s) 187, 295
TseI GCWGC 4 cut(s) 245, 353, 496, 681
Tsp45I GTSAC 2 cut(s) 187, 295
TspDTI ATGAA 3 cut(s) 17, 23, 447
TspGWI ACGGA 2 cut(s) 267, 406
TspRI CASTG 1 cut(s) 647
VneI GTGCAC 1 cut(s) 57
VpaK11BI GGWCC 2 cut(s) 519, 704
XceI RCATGY 4 cut(s) 65, 303, 606, 696
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 2 cut(s) 164, 335
ZraI GACGTC 2 cut(s) 187, 382
ZrmI AGTACT 2 cut(s) 21, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.