RchiOBHm_Chr3g0484161

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000594
Physical Location & Seq
Reverse (-)
30504531 .. 30505009
479 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44887

Sequence Viewer

Length: 255 bp
ATGTGTCCGAGTGAGCTACAAGTAACGGGGGCTGGCGGGAGCGTGGTTGGCTGCATGAGCGCGTGCTTGAAGTTCAATGAGCCCAAGTATTGCTGCACTCCACCTAATGAAAAGCCAGAGACATGTCCTCCTACAGACTACTCTATGAAGTTTAGTCAACAATGCCCTGAGGCTTACAGCTACGCTTATGATGACAAGAAAGGCACATTCACTTGCTCCGGGGGACCTAACTACGCTATTACTTTCTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

84

Amino Acids

9.07

Weight (kDa)

4.81

Isoelectric Point (pI)

67.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 2 - 84 1.4e-28 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 62
AciI CCGC 1 cut(s) 36
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 2 cut(s) 70, 76
AluBI AGCT 2 cut(s) 16, 180
AluI AGCT 2 cut(s) 16, 180
Alw26I GTCTC 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 51, 93
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 220
AvaII GGWCC 1 cut(s) 224
AxyI CCTNAGG 1 cut(s) 168
BanII GRGCYC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 38, 80
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 2 cut(s) 52, 94
BlsI GCNGC 2 cut(s) 53, 95
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 220
BpuMI CCSGG 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bse21I CCTNAGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 159
BseXI GCAGC 2 cut(s) 38, 80
BsgI GTGCAG 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 62
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 84
BspACI CCGC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 34, 64
BstDEI CTNAG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 62
BstMAI GTCTC 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 48, 57
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 38, 80
Bsu36I CCTNAGG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 34, 64
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 224
CviAII CATG 2 cut(s) 55, 123
CviJI RGCY 7 cut(s) 16, 32, 51, 82, 115, 173, 180
CviKI_1 RGCY 7 cut(s) 16, 32, 51, 82, 115, 173, 180
DdeI CTNAG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 224
Eco81I CCTNAGG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 2 cut(s) 58, 126
FaiI YATR 5 cut(s) 56, 124, 146, 189, 253
FaqI GGGAC 1 cut(s) 237
FatI CATG 2 cut(s) 54, 122
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 52, 94
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 52, 94
GlaI GCGC 1 cut(s) 61
GluI GCNGC 2 cut(s) 52, 94
HapII CCGG 1 cut(s) 219
HhaI GCGC 1 cut(s) 62
Hin1II CATG 2 cut(s) 58, 126
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 54, 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 57
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 2 cut(s) 58, 126
HspAI GCGC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 39, 221
LpnPI CCDG 4 cut(s) 18, 129, 180, 232
Lsp1109I GCAGC 2 cut(s) 38, 80
MaeIII GTNAC 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 84
MnlI CCTC 2 cut(s) 138, 163
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 220
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 48, 57
NciI CCSGG 1 cut(s) 220
NlaIII CATG 2 cut(s) 58, 126
NlaIV GGNNCC 1 cut(s) 225
NspI RCATGY 1 cut(s) 126
PciI ACATGT 1 cut(s) 122
PkrI GCNGC 2 cut(s) 53, 95
PpuMI RGGWCCY 1 cut(s) 224
PscI ACATGT 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
SatI GCNGC 2 cut(s) 52, 94
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 1 cut(s) 84
SetI ASST 4 cut(s) 18, 106, 182, 229
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 224
SsiI CCGC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 218
TseI GCWGC 2 cut(s) 51, 93
TspDTI ATGAA 2 cut(s) 123, 161
VpaK11BI GGWCC 1 cut(s) 224
XceI RCATGY 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.