pycom10g17230

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000594
Physical Location & Seq
Reverse (-)
20461619 .. 20463184
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g17230.1

Sequence Viewer

Length: 813 bp
ATGTTTGTAGATAGGTTTGAAATATTAGCAGATATTTATCAGACGGAAAAATCTCAAAAAGCAATCGGAGCGCTCAACATGAAATTTGAAGCGTTAATCGGCCTTGTATTAGTCTTCCTCTCAGAACATGCAGGGGTTTACTCGGCCAAGTTCACATTCACAAACAAATGTCCCAACACAGTTTGGCCAGGAACCCTAACCGGAGGCGGTGGCCCACAATTACTTTCCACGGGATTTGAGTTAGCCTCCGGTGCTTCAACATCACTGACTGTCCAAGCTCCGTGGTCCGGCCGCTTCTGGGGCCGCTCTCACTGCTCGATAGACTCCTCCGGAAAGTTCAAATGCTCAACAGGAGATTGTGGCTCTGGCCAAATATCCTGCAATGGTGCCGGTGCAAGTCCACCAGCATCCCTAGTGGAGTTAACCCTAGCAACCAACGGAGGACAAGATTTCTACGATGTTAGCCTTGTTGACGGCTTCAACTTGCCCATTAAGTTAGCCCCCAGAGGCGGCTCCGGTGATTGCAACTCCACAAGCTGCGCGGCCAATATAAACACTGTTTGTCCTGCGGAGTTGTCTGACAAAGGATCAGATGGGAGTGTGATTGGCTGCAAAAGTGCATGTTTGGCTTTAAATCAGCCCCAATATTGTTGCACTGGCGCTTATGGAACCCCTGATACATGCCCTCCTACTGACTTTTCAAAGGTCTTCAAGAAGCAGTGTCCCCAGGCTTATAGTTATGCTTATGATGACAAATCTAGTACTTTCACATGCTTTGGTGGCCCTAACTATGAAATTACCTTCTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

271

Amino Acids

28.31

Weight (kDa)

5.17

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 55 - 270 3.3e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 386
AccBSI CCGCTC 1 cut(s) 306
AccII CGCG 1 cut(s) 542
AccIII TCCGGA 1 cut(s) 329
AciI CCGC 6 cut(s) 207, 292, 304, 510, 542, 569
AclWI GGATC 1 cut(s) 595
AcoI YGGCCR 5 cut(s) 144, 185, 289, 367, 543
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 763
AfeI AGCGCT 1 cut(s) 72
AfiI CCNNNNNNNGG 3 cut(s) 287, 298, 509
AgsI TTSAA 7 cut(s) 20, 89, 258, 340, 481, 702, 712
AjnI CCWGG 2 cut(s) 187, 726
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 2 cut(s) 278, 537
AluI AGCT 2 cut(s) 278, 537
AlwI GGATC 1 cut(s) 595
Aor13HI TCCGGA 1 cut(s) 329
Aor51HI AGCGCT 1 cut(s) 72
AoxI GGCC 9 cut(s) 100, 144, 185, 211, 289, 301, 367, 543, 781
ApeKI GCWGC 2 cut(s) 537, 609
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 3 cut(s) 73, 542, 662
AspS9I GGNCC 4 cut(s) 212, 285, 301, 782
AsuHPI GGTGA 1 cut(s) 530
AvaII GGWCC 1 cut(s) 285
BalI TGGCCA 2 cut(s) 187, 369
BanI GGYRCC 1 cut(s) 386
BbsI GAAGAC 2 cut(s) 106, 700
BbvI GCAGC 2 cut(s) 524, 596
BccI CCATC 1 cut(s) 587
BceAI ACGGC 1 cut(s) 490
BciT130I CCWGG 2 cut(s) 189, 728
BfaI CTAG 3 cut(s) 413, 428, 759
BfoI RGCGCY 2 cut(s) 74, 663
BisI GCNGC 6 cut(s) 292, 304, 511, 538, 543, 610
BlsI GCNGC 6 cut(s) 293, 305, 512, 539, 544, 611
BmcAI AGTACT 1 cut(s) 763
Bme1390I CCNGG 2 cut(s) 189, 728
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 4 cut(s) 212, 285, 301, 782
BmiI GGNNCC 5 cut(s) 193, 302, 388, 514, 670
BmrFI CCNGG 2 cut(s) 189, 728
BmsI GCATC 1 cut(s) 416
BpiI GAAGAC 2 cut(s) 106, 700
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BsaBI GATNNNNATC 1 cut(s) 36
BsaJI CCNNGG 3 cut(s) 228, 281, 726
BsaWI WCCGGW 4 cut(s) 200, 248, 329, 515
BsaXI ACNNNNNCTCC 2 cut(s) 670, 700
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 298, 509
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 661
Bse3DI GCAATG 1 cut(s) 388
Bse8I GATNNNNATC 1 cut(s) 36
BseAI TCCGGA 1 cut(s) 329
BseBI CCWGG 2 cut(s) 189, 728
BseDI CCNNGG 3 cut(s) 228, 281, 726
BseGI GGATG 1 cut(s) 407
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 3 cut(s) 287, 298, 509
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 661
BseRI GAGGAG 1 cut(s) 316
BseX3I CGGCCG 1 cut(s) 289
BseXI GCAGC 2 cut(s) 524, 596
Bsh1236I CGCG 1 cut(s) 542
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 9 cut(s) 102, 146, 187, 213, 291, 303, 369, 545, 783
BshNI GGYRCC 1 cut(s) 386
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 6 cut(s) 201, 249, 288, 330, 390, 516
BslFI GGGAC 2 cut(s) 156, 708
BslI CCNNNNNNNGG 3 cut(s) 287, 298, 509
BsmFI GGGAC 2 cut(s) 156, 708
BsnI GGCC 9 cut(s) 102, 146, 187, 213, 291, 303, 369, 545, 783
Bsp13I TCCGGA 1 cut(s) 329
Bsp143I GATC 1 cut(s) 587
BspACI CCGC 6 cut(s) 207, 292, 304, 510, 542, 569
BspANI GGCC 9 cut(s) 102, 146, 187, 213, 291, 303, 369, 545, 783
BspCNI CTCAG 1 cut(s) 134
BspEI TCCGGA 1 cut(s) 329
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 5 cut(s) 193, 302, 388, 514, 670
BspPI GGATC 1 cut(s) 595
BspT107I GGYRCC 1 cut(s) 386
BsrBI CCGCTC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 1 cut(s) 661
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 3 cut(s) 228, 281, 726
BssMI GATC 1 cut(s) 587
Bst2UI CCWGG 2 cut(s) 189, 728
Bst4CI ACNGT 3 cut(s) 181, 271, 559
BstDEI CTNAG 1 cut(s) 121
BstDSI CCRYGG 2 cut(s) 228, 281
BstF5I GGATG 1 cut(s) 407
BstFNI CGCG 1 cut(s) 542
BstH2I RGCGCY 2 cut(s) 74, 663
BstHHI GCGC 3 cut(s) 73, 542, 662
BstKTI GATC 1 cut(s) 590
BstMBI GATC 1 cut(s) 587
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 6 cut(s) 68, 251, 300, 312, 626, 780
BstNI CCWGG 2 cut(s) 189, 728
BstNSI RCATGY 4 cut(s) 131, 624, 684, 774
BstSCI CCNGG 2 cut(s) 187, 726
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 2 cut(s) 524, 596
BstV2I GAAGAC 2 cut(s) 106, 700
BstZI CGGCCG 1 cut(s) 289
BsuRI GGCC 9 cut(s) 102, 146, 187, 213, 291, 303, 369, 545, 783
BtgI CCRYGG 2 cut(s) 228, 281
BtsCI GGATG 1 cut(s) 407
BtsI GCAGTG 2 cut(s) 310, 725
BtsIMutI CAGTG 5 cut(s) 263, 310, 555, 654, 725
CfoI GCGC 3 cut(s) 73, 542, 662
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 4 cut(s) 212, 285, 301, 782
Csp6I GTAC 1 cut(s) 762
CspCI CAANNNNNGTGG 4 cut(s) 217, 252, 263, 298
CviAII CATG 5 cut(s) 79, 128, 621, 681, 771
CviQI GTAC 1 cut(s) 762
DdeI CTNAG 1 cut(s) 121
DpnI GATC 1 cut(s) 589
DpnII GATC 1 cut(s) 587
DraI TTTAAA 1 cut(s) 633
EaeI YGGCCR 5 cut(s) 144, 185, 289, 367, 543
EagI CGGCCG 1 cut(s) 289
EclXI CGGCCG 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 285
Eco47III AGCGCT 1 cut(s) 72
Eco52I CGGCCG 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 187, 726
FaeI CATG 5 cut(s) 82, 131, 624, 684, 774
FaqI GGGAC 2 cut(s) 156, 708
FatI CATG 5 cut(s) 78, 127, 620, 680, 770
Fnu4HI GCNGC 6 cut(s) 292, 304, 511, 538, 543, 610
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 6 cut(s) 292, 304, 511, 538, 543, 610
FspBI CTAG 3 cut(s) 413, 428, 759
GlaI GCGC 3 cut(s) 72, 541, 661
GluI GCNGC 6 cut(s) 292, 304, 511, 538, 543, 610
HaeII RGCGCY 2 cut(s) 74, 663
HaeIII GGCC 9 cut(s) 102, 146, 187, 213, 291, 303, 369, 545, 783
HapII CCGG 6 cut(s) 201, 249, 288, 330, 390, 516
HhaI GCGC 3 cut(s) 73, 542, 662
Hin1II CATG 5 cut(s) 82, 131, 624, 684, 774
Hin6I GCGC 3 cut(s) 71, 540, 660
HinP1I GCGC 3 cut(s) 71, 540, 660
HincII GTYRAC 2 cut(s) 423, 472
HindII GTYRAC 2 cut(s) 423, 472
HinfI GANTC 1 cut(s) 323
HpaI GTTAAC 1 cut(s) 423
HpaII CCGG 6 cut(s) 201, 249, 288, 330, 390, 516
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 5 cut(s) 139, 153, 401, 423, 472
Hpy188I TCNGA 5 cut(s) 42, 68, 124, 580, 592
Hpy188III TCNNGA 2 cut(s) 330, 712
Hpy8I GTNNAC 5 cut(s) 139, 153, 401, 423, 472
HpyAV CCTTC 1 cut(s) 811
HpyCH4III ACNGT 3 cut(s) 181, 271, 559
HpyCH4V TGCA 7 cut(s) 131, 381, 395, 525, 612, 620, 654
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 251, 300, 312, 626, 780
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 5 cut(s) 82, 131, 624, 684, 774
HspAI GCGC 3 cut(s) 71, 540, 660
Kpn2I TCCGGA 1 cut(s) 329
KspAI GTTAAC 1 cut(s) 423
Kzo9I GATC 1 cut(s) 587
LmnI GCTCC 3 cut(s) 68, 283, 518
Lsp1109I GCAGC 2 cut(s) 524, 596
LweI GCATC 1 cut(s) 416
MaeI CTAG 3 cut(s) 413, 428, 759
MalI GATC 1 cut(s) 589
MbiI CCGCTC 1 cut(s) 306
MboI GATC 1 cut(s) 587
MboII GAAGA 2 cut(s) 106, 700
MlsI TGGCCA 2 cut(s) 187, 369
MluCI AATT 3 cut(s) 83, 218, 795
MluNI TGGCCA 2 cut(s) 187, 369
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 7 cut(s) 128, 197, 256, 337, 434, 500, 696
Mox20I TGGCCA 2 cut(s) 187, 369
MroI TCCGGA 1 cut(s) 329
MscI TGGCCA 2 cut(s) 187, 369
MseI TTAA 4 cut(s) 95, 422, 492, 632
Msp20I TGGCCA 2 cut(s) 187, 369
MspI CCGG 6 cut(s) 201, 249, 288, 330, 390, 516
MspR9I CCNGG 2 cut(s) 189, 728
MvaI CCWGG 2 cut(s) 189, 728
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 6 cut(s) 68, 251, 300, 312, 626, 780
NdeII GATC 1 cut(s) 587
NlaIII CATG 5 cut(s) 82, 131, 624, 684, 774
NlaIV GGNNCC 5 cut(s) 193, 302, 388, 514, 670
NmeAIII GCCGAG 1 cut(s) 122
NspI RCATGY 4 cut(s) 131, 624, 684, 774
PkrI GCNGC 6 cut(s) 293, 305, 512, 539, 544, 611
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 187, 726
PspGI CCWGG 2 cut(s) 187, 726
PspN4I GGNNCC 5 cut(s) 193, 302, 388, 514, 670
PspPI GGNCC 4 cut(s) 212, 285, 301, 782
PsrI GAACNNNNNNTAC 2 cut(s) 661, 693
RsaI GTAC 1 cut(s) 763
RsaNI GTAC 1 cut(s) 762
SaqAI TTAA 4 cut(s) 95, 422, 492, 632
SatI GCNGC 6 cut(s) 292, 304, 511, 538, 543, 610
Sau3AI GATC 1 cut(s) 587
Sau96I GGNCC 4 cut(s) 212, 285, 301, 782
ScaI AGTACT 1 cut(s) 763
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 189, 728
SetI ASST 5 cut(s) 17, 280, 539, 708, 803
SfaNI GCATC 1 cut(s) 416
SinI GGWCC 1 cut(s) 285
Sse9I AATT 3 cut(s) 83, 218, 795
SsiI CCGC 6 cut(s) 207, 292, 304, 510, 542, 569
SspI AATATT 2 cut(s) 24, 647
SspMI CTAG 3 cut(s) 413, 428, 759
StyD4I CCNGG 2 cut(s) 187, 726
TaaI ACNGT 3 cut(s) 181, 271, 559
TaqI TCGA 1 cut(s) 317
TasI AATT 3 cut(s) 83, 218, 795
TatI WGTACW 1 cut(s) 761
TauI GCSGC 4 cut(s) 294, 306, 513, 545
Tru1I TTAA 4 cut(s) 95, 422, 492, 632
Tru9I TTAA 4 cut(s) 95, 422, 492, 632
TscAI CASTG 5 cut(s) 270, 317, 562, 661, 725
TseI GCWGC 2 cut(s) 537, 609
TspDTI ATGAA 2 cut(s) 95, 807
TspGWI ACGGA 3 cut(s) 59, 270, 453
TspRI CASTG 5 cut(s) 270, 317, 562, 661, 725
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 1 cut(s) 83
XceI RCATGY 4 cut(s) 131, 624, 684, 774
XspI CTAG 3 cut(s) 413, 428, 759
ZrmI AGTACT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.