MD17G1249400.v1.1

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000594
Physical Location & Seq
Reverse (-)
29784853 .. 29785596
744 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1249400.v1.1.491

Sequence Viewer

Length: 744 bp
ATGTTGAATATAAATTCAGGTGCACATGCAGCCAAAATCACTTTCACAAACAACTGCCCCAACACTGTCTGGCCAGGAACCCTAACCGGTGACCAAAAACCTCAATTATCACTCACCGGGTTCGAATTAGCATCCAAAGCTAACCGGTCAGTGGACGCTCCATCCCCATGGTCCGGTCGCTTCTGGGGCCGAACCAGATGCTCCACAGATGCCGCTGGAAAATTCTCTTGTGAAACTGCAGACTGTGGCTCTGGCCAAGTCGCATGCAACGGCACAAGCGCAGCTCCACCAGCAACTGTAGTAGAAATTAAAATCTCAGAAAAATGGGGACAAGATTTGTACGATGTTACTCTTGTTGACGGCTTCAACTTACCCATTTCCGTCGCCCCACAAGGCGGCACCAGCGAGTGCATGGCCTCGACTTGCGATGCGAATGTTAACGCAGCATGCCCGGCTGAGTTACAAGTGAAAGCGGTTGATGGGAGTGTCATCAGTTGCAAAAGCGCTTGCATGGCATTCAACGAGCCGAAGTACTGCTGCACTGCGTCGAATGATACATGTCAACCCACAGAGTACTCTCAGATCCTTGAGCAGCAGTGCCCTATAGCTTATAACTATGCTTATTTATCCTGCAATGGCGGACCTGACTACATCATTAGATTCTGCCCATATGGTATGTCTACTCGCAGCCACAATAAAAAGAAGGATTCTTTAGATGTAGACCTTGCAACTCTTATTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

248

Amino Acids

26.26

Weight (kDa)

5.03

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 17 - 223 6.4e-65 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
AccB1I GGYRCC 1 cut(s) 398
AccI GTMKAC 2 cut(s) 680, 720
AciI CCGC 4 cut(s) 213, 396, 473, 639
AclWI GGATC 1 cut(s) 577
AcoI YGGCCR 2 cut(s) 71, 253
AcsI RAATTY 2 cut(s) 13, 221
AfaI GTAC 3 cut(s) 341, 533, 575
AfeI AGCGCT 1 cut(s) 505
AfiI CCNNNNNNNGG 3 cut(s) 151, 173, 395
AflIII ACRYGT 1 cut(s) 557
AgeI ACCGGT 2 cut(s) 86, 144
AgsI TTSAA 3 cut(s) 7, 367, 520
AjnI CCWGG 1 cut(s) 73
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 3 cut(s) 140, 284, 608
AluI AGCT 3 cut(s) 140, 284, 608
Alw21I GWGCWC 1 cut(s) 25
Alw44I GTGCAC 1 cut(s) 21
AlwI GGATC 1 cut(s) 577
AlwNI CAGNNNCTG 1 cut(s) 296
Aor51HI AGCGCT 1 cut(s) 505
AoxI GGCC 4 cut(s) 71, 187, 253, 414
ApaLI GTGCAC 1 cut(s) 21
ApeKI GCWGC 6 cut(s) 29, 281, 443, 537, 592, 687
ApoI RAATTY 2 cut(s) 13, 221
AsiGI ACCGGT 2 cut(s) 86, 144
AspLEI GCGC 2 cut(s) 281, 506
AspS9I GGNCC 3 cut(s) 171, 187, 641
AsuC2I CCSGG 2 cut(s) 118, 452
AsuHPI GGTGA 2 cut(s) 101, 106
AsuII TTCGAA 1 cut(s) 123
AvaII GGWCC 2 cut(s) 171, 641
BaeGI GKGCMC 2 cut(s) 25, 602
BalI TGGCCA 2 cut(s) 73, 255
BanI GGYRCC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 6 cut(s) 41, 293, 455, 524, 604, 699
BccI CCATC 2 cut(s) 169, 473
BceAI ACGGC 2 cut(s) 286, 376
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 2 cut(s) 118, 452
BfaI CTAG 1 cut(s) 742
BfmI CTRYAG 3 cut(s) 237, 297, 603
BfoI RGCGCY 1 cut(s) 507
BisI GCNGC 8 cut(s) 30, 213, 282, 397, 444, 538, 593, 688
BlsI GCNGC 8 cut(s) 31, 214, 283, 398, 445, 539, 594, 689
BmcAI AGTACT 2 cut(s) 533, 575
Bme1390I CCNGG 3 cut(s) 75, 118, 452
Bme18I GGWCC 2 cut(s) 171, 641
BmgT120I GGNCC 3 cut(s) 171, 187, 641
BmiI GGNNCC 3 cut(s) 79, 188, 400
BmrFI CCNGG 3 cut(s) 75, 118, 452
BmsI GCATC 4 cut(s) 140, 188, 199, 418
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 2 cut(s) 118, 452
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 3 cut(s) 86, 144, 173
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 173, 395
Bse118I RCCGGY 2 cut(s) 86, 144
Bse3DI GCAATG 1 cut(s) 640
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 131, 161
BseLI CCNNNNNNNGG 3 cut(s) 151, 173, 395
BseMI GCAATG 1 cut(s) 640
BseMII CTCAG 3 cut(s) 330, 447, 593
BseSI GKGCMC 2 cut(s) 25, 602
BseXI GCAGC 6 cut(s) 41, 293, 455, 524, 604, 699
BsgI GTGCAG 1 cut(s) 523
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 4 cut(s) 73, 189, 255, 416
BshNI GGYRCC 1 cut(s) 398
BshTI ACCGGT 2 cut(s) 86, 144
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 5 cut(s) 87, 117, 145, 174, 452
BslFI GGGAC 1 cut(s) 342
BslI CCNNNNNNNGG 3 cut(s) 151, 173, 395
BsmFI GGGAC 1 cut(s) 342
BsmI GAATGC 1 cut(s) 515
BsnI GGCC 4 cut(s) 73, 189, 255, 416
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 25, 602
Bsp143I GATC 1 cut(s) 582
Bsp19I CCATGG 1 cut(s) 167
BspACI CCGC 4 cut(s) 213, 396, 473, 639
BspANI GGCC 4 cut(s) 73, 189, 255, 416
BspCNI CTCAG 3 cut(s) 329, 448, 592
BspLI GGNNCC 3 cut(s) 79, 188, 400
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 577
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 640
BsrFI RCCGGY 2 cut(s) 86, 144
BssAI RCCGGY 2 cut(s) 86, 144
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 1 cut(s) 582
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 3 cut(s) 67, 245, 298
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 265, 448, 508
BstDEI CTNAG 3 cut(s) 316, 456, 579
BstDSI CCRYGG 1 cut(s) 167
BstEII GGTNACC 1 cut(s) 89
BstF5I GGATG 2 cut(s) 131, 161
BstH2I RGCGCY 1 cut(s) 507
BstHHI GCGC 2 cut(s) 281, 506
BstKTI GATC 1 cut(s) 585
BstMBI GATC 1 cut(s) 582
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 7 cut(s) 29, 137, 186, 290, 402, 452, 512
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 4 cut(s) 29, 267, 450, 561
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 3 cut(s) 73, 116, 450
BstSFI CTRYAG 3 cut(s) 237, 297, 603
BstSLI GKGCMC 2 cut(s) 25, 602
BstV1I GCAGC 6 cut(s) 41, 293, 455, 524, 604, 699
BstX2I RGATCY 1 cut(s) 582
BstXI CCANNNNNNTGG 1 cut(s) 168
BstYI RGATCY 1 cut(s) 582
BsuRI GGCC 4 cut(s) 73, 189, 255, 416
BtgI CCRYGG 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 131, 161
BtsI GCAGTG 2 cut(s) 540, 602
BtsIMutI CAGTG 4 cut(s) 63, 156, 540, 602
Cac8I GCNNGC 3 cut(s) 265, 448, 508
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 2 cut(s) 281, 506
Cfr10I RCCGGY 2 cut(s) 86, 144
Cfr13I GGNCC 3 cut(s) 171, 187, 641
CseI GACGC 2 cut(s) 164, 534
Csp6I GTAC 3 cut(s) 340, 532, 574
CspAI ACCGGT 2 cut(s) 86, 144
CviAII CATG 7 cut(s) 26, 168, 264, 412, 447, 511, 558
CviQI GTAC 3 cut(s) 340, 532, 574
DdeI CTNAG 3 cut(s) 316, 456, 579
DpnI GATC 1 cut(s) 584
DpnII GATC 1 cut(s) 582
EaeI YGGCCR 2 cut(s) 71, 253
EciI GGCGGA 1 cut(s) 654
Eco130I CCWWGG 1 cut(s) 167
Eco47I GGWCC 2 cut(s) 171, 641
Eco47III AGCGCT 1 cut(s) 505
Eco91I GGTNACC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 7 cut(s) 29, 171, 267, 415, 450, 514, 561
FaqI GGGAC 1 cut(s) 342
FatI CATG 7 cut(s) 25, 167, 263, 411, 446, 510, 557
FauNDI CATATG 1 cut(s) 670
FblI GTMKAC 2 cut(s) 680, 720
Fnu4HI GCNGC 8 cut(s) 30, 213, 282, 397, 444, 538, 593, 688
FokI GGATG 2 cut(s) 118, 148
Fsp4HI GCNGC 8 cut(s) 30, 213, 282, 397, 444, 538, 593, 688
FspBI CTAG 1 cut(s) 742
GlaI GCGC 2 cut(s) 280, 505
GluI GCNGC 8 cut(s) 30, 213, 282, 397, 444, 538, 593, 688
HaeII RGCGCY 1 cut(s) 507
HaeIII GGCC 4 cut(s) 73, 189, 255, 416
HapII CCGG 5 cut(s) 87, 117, 145, 174, 452
HgaI GACGC 2 cut(s) 164, 534
HhaI GCGC 2 cut(s) 281, 506
Hin1II CATG 7 cut(s) 29, 171, 267, 415, 450, 514, 561
Hin6I GCGC 2 cut(s) 279, 504
HinP1I GCGC 2 cut(s) 279, 504
HincII GTYRAC 3 cut(s) 358, 439, 563
HindII GTYRAC 3 cut(s) 358, 439, 563
HinfI GANTC 2 cut(s) 660, 707
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 5 cut(s) 87, 117, 145, 174, 452
HphI GGTGA 2 cut(s) 101, 106
Hpy166II GTNNAC 7 cut(s) 23, 154, 358, 439, 563, 681, 721
Hpy188I TCNGA 2 cut(s) 319, 582
Hpy8I GTNNAC 7 cut(s) 23, 154, 358, 439, 563, 681, 721
Hpy99I CGWCG 2 cut(s) 386, 550
HpyAV CCTTC 1 cut(s) 697
HpyCH4III ACNGT 3 cut(s) 67, 245, 298
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 137, 186, 290, 402, 452, 512
HpyF3I CTNAG 3 cut(s) 316, 456, 579
Hsp92II CATG 7 cut(s) 29, 171, 267, 415, 450, 514, 561
HspAI GCGC 2 cut(s) 279, 504
KspAI GTTAAC 1 cut(s) 439
Kzo9I GATC 1 cut(s) 582
LmnI GCTCC 3 cut(s) 163, 206, 289
Lsp1109I GCAGC 6 cut(s) 41, 293, 455, 524, 604, 699
LweI GCATC 4 cut(s) 140, 188, 199, 418
MaeI CTAG 1 cut(s) 742
MaeIII GTNAC 3 cut(s) 89, 346, 459
MalI GATC 1 cut(s) 584
MboI GATC 1 cut(s) 582
MflI RGATCY 1 cut(s) 582
MhlI GDGCHC 2 cut(s) 25, 602
MlsI TGGCCA 2 cut(s) 73, 255
MluCI AATT 5 cut(s) 13, 104, 125, 221, 306
MluNI TGGCCA 2 cut(s) 73, 255
MnlI CCTC 2 cut(s) 111, 427
Mox20I TGGCCA 2 cut(s) 73, 255
MscI TGGCCA 2 cut(s) 73, 255
MseI TTAA 2 cut(s) 309, 438
MslI CAYNNNNRTG 1 cut(s) 166
Msp20I TGGCCA 2 cut(s) 73, 255
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 5 cut(s) 87, 117, 145, 174, 452
MspR9I CCNGG 3 cut(s) 75, 118, 452
Mva1269I GAATGC 1 cut(s) 515
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 7 cut(s) 29, 137, 186, 290, 402, 452, 512
NciI CCSGG 2 cut(s) 118, 452
NcoI CCATGG 1 cut(s) 167
NdeI CATATG 1 cut(s) 670
NdeII GATC 1 cut(s) 582
NlaIII CATG 7 cut(s) 29, 171, 267, 415, 450, 514, 561
NlaIV GGNNCC 3 cut(s) 79, 188, 400
NmuCI GTSAC 1 cut(s) 89
NspI RCATGY 4 cut(s) 29, 267, 450, 561
NspV TTCGAA 1 cut(s) 123
PaeI GCATGC 2 cut(s) 267, 450
PciI ACATGT 1 cut(s) 557
PctI GAATGC 1 cut(s) 515
PfeI GAWTC 2 cut(s) 660, 707
PinAI ACCGGT 2 cut(s) 86, 144
PkrI GCNGC 8 cut(s) 31, 214, 283, 398, 445, 539, 594, 689
PscI ACATGT 1 cut(s) 557
PsiI TTATAA 1 cut(s) 612
Psp6I CCWGG 1 cut(s) 73
PspEI GGTNACC 1 cut(s) 89
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 3 cut(s) 79, 188, 400
PspPI GGNCC 3 cut(s) 171, 187, 641
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 582
RsaI GTAC 3 cut(s) 341, 533, 575
RsaNI GTAC 3 cut(s) 340, 532, 574
RseI CAYNNNNRTG 1 cut(s) 166
SaqAI TTAA 2 cut(s) 309, 438
SatI GCNGC 8 cut(s) 30, 213, 282, 397, 444, 538, 593, 688
Sau3AI GATC 1 cut(s) 582
Sau96I GGNCC 3 cut(s) 171, 187, 641
ScaI AGTACT 2 cut(s) 533, 575
ScrFI CCNGG 3 cut(s) 75, 118, 452
SduI GDGCHC 2 cut(s) 25, 602
SetI ASST 7 cut(s) 22, 103, 142, 286, 610, 646, 726
SfaNI GCATC 4 cut(s) 140, 188, 199, 418
SfcI CTRYAG 3 cut(s) 237, 297, 603
SfuI TTCGAA 1 cut(s) 123
SinI GGWCC 2 cut(s) 171, 641
SmiMI CAYNNNNRTG 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SphI GCATGC 2 cut(s) 267, 450
Sse9I AATT 5 cut(s) 13, 104, 125, 221, 306
SsiI CCGC 4 cut(s) 213, 396, 473, 639
SspMI CTAG 1 cut(s) 742
StyD4I CCNGG 3 cut(s) 73, 116, 450
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 3 cut(s) 67, 245, 298
TaqI TCGA 3 cut(s) 123, 419, 548
TasI AATT 5 cut(s) 13, 104, 125, 221, 306
TatI WGTACW 2 cut(s) 531, 573
TauI GCSGC 2 cut(s) 215, 399
TfiI GAWTC 2 cut(s) 660, 707
Tru1I TTAA 2 cut(s) 309, 438
Tru9I TTAA 2 cut(s) 309, 438
TscAI CASTG 4 cut(s) 70, 156, 547, 602
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 6 cut(s) 29, 281, 443, 537, 592, 687
Tsp45I GTSAC 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 4 cut(s) 70, 156, 547, 602
VneI GTGCAC 1 cut(s) 21
VpaK11BI GGWCC 2 cut(s) 171, 641
XapI RAATTY 2 cut(s) 13, 221
XceI RCATGY 4 cut(s) 29, 267, 450, 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmiI GTMKAC 2 cut(s) 680, 720
XspI CTAG 1 cut(s) 742
ZrmI AGTACT 2 cut(s) 533, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.