Rmu_sc0000839.1_g000011

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000839.1
OG0000594
Physical Location & Seq
Reverse (-)
60495 .. 61623
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000839.1_g000011.1.cds

Sequence Viewer

Length: 735 bp
atgaacacccaagtactcctcagcctcaccttggccatattcttcgcaggtgcacatgcggctacgatcaccttcaccaacaactgcccctacaccgtatggccaggaaccctcacctccgaccaacaaccccaactatccaccaccggcttcgagctagcacagggagccaaaaaagacgtcaccactccagttccatggaaaggccgcttctggggccgaaccagatgctccaccgctgccgacggaaagttctcctgcgccacagctgactgcggctccggccaggtcacatgcaacggcaacggcgcagtcccaccggcaactctagtcgaaatcaacatcgcagctgccggcggtcaggacttctacgacgtcagcctggtcgacggcttcaacttgcccatgtccgtggccccgcagggtggaaccggcgactgcaagccctcttcatgcccggctgacgtgaacaaggcctgtcctgcggagctgcaagtgaaggccgacgacgggaccgtgattgcctgcaagagcgcttgtgtggcgttcaacgagccaaagtactgttgcacacctccgaataacactcccgaaacatgtcctcccacaaactactctaagatctttgaggaccagtgccctcaggcttatagctacgcttacgatgaccagaacagcacgtttacatgcttcggtggacctaactacgccattacattctgtcccgcggcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

244

Amino Acids

25.63

Weight (kDa)

4.56

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 38
AatII GACGTC 2 cut(s) 183, 378
Acc36I ACCTGC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 387
AccII CGCG 1 cut(s) 728
AciI CCGC 9 cut(s) 59, 208, 237, 276, 357, 419, 485, 726, 728
AcoI YGGCCR 3 cut(s) 33, 101, 283
AcyI GRCGYC 2 cut(s) 180, 375
AfaI GTAC 2 cut(s) 15, 563
AfeI AGCGCT 1 cut(s) 535
AfiI CCNNNNNNNGG 5 cut(s) 31, 203, 214, 425, 510
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 2 cut(s) 397, 550
AjiI CACGTC 1 cut(s) 466
AjnI CCWGG 3 cut(s) 103, 285, 381
AluBI AGCT 5 cut(s) 157, 269, 350, 490, 654
AluI AGCT 5 cut(s) 157, 269, 350, 490, 654
Alw21I GWGCWC 1 cut(s) 55
Alw44I GTGCAC 1 cut(s) 51
Aor51HI AGCGCT 1 cut(s) 535
AoxI GGCC 8 cut(s) 33, 101, 205, 217, 283, 414, 474, 501
ApaLI GTGCAC 1 cut(s) 51
ApeKI GCWGC 4 cut(s) 239, 347, 350, 490
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
AspLEI GCGC 3 cut(s) 263, 311, 536
AspS9I GGNCC 5 cut(s) 217, 415, 513, 631, 698
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 5 cut(s) 19, 61, 67, 106, 175
AsuNHI GCTAGC 1 cut(s) 157
AvaII GGWCC 3 cut(s) 513, 631, 698
AxyI CCTNAGG 1 cut(s) 642
BaeGI GKGCMC 2 cut(s) 55, 641
BalI TGGCCA 2 cut(s) 35, 103
Bbv12I GWGCWC 1 cut(s) 55
BbvCI CCTCAGC 1 cut(s) 20
BbvI GCAGC 4 cut(s) 226, 337, 359, 477
BceAI ACGGC 3 cut(s) 316, 322, 406
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 3 cut(s) 105, 287, 383
BcnI CCSGG 1 cut(s) 458
BfaI CTAG 2 cut(s) 158, 329
BfoI RGCGCY 1 cut(s) 537
BfuAI ACCTGC 1 cut(s) 38
BglII AGATCT 1 cut(s) 621
BisI GCNGC 8 cut(s) 60, 208, 240, 277, 348, 351, 491, 729
BlsI GCNGC 8 cut(s) 61, 209, 241, 278, 349, 352, 492, 730
BmcAI AGTACT 2 cut(s) 15, 563
Bme1390I CCNGG 4 cut(s) 105, 287, 383, 458
Bme18I GGWCC 3 cut(s) 513, 631, 698
BmgBI CACGTC 1 cut(s) 466
BmgT120I GGNCC 5 cut(s) 217, 415, 513, 631, 698
BmiI GGNNCC 7 cut(s) 109, 169, 218, 280, 417, 430, 514
BmrFI CCNGG 4 cut(s) 105, 287, 383, 458
BmsI GCATC 1 cut(s) 218
BmtI GCTAGC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 458
BsaHI GRCGYC 2 cut(s) 180, 375
BsaJI CCNNGG 4 cut(s) 30, 197, 411, 726
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 586, 616
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 203, 214, 425, 510
Bse118I RCCGGY 4 cut(s) 146, 319, 353, 431
Bse1I ACTGG 2 cut(s) 191, 634
Bse21I CCTNAGG 1 cut(s) 642
BseBI CCWGG 3 cut(s) 105, 287, 383
BseDI CCNNGG 4 cut(s) 30, 197, 411, 726
BseLI CCNNNNNNNGG 5 cut(s) 31, 203, 214, 425, 510
BseMII CTCAG 2 cut(s) 34, 656
BseNI ACTGG 2 cut(s) 191, 634
BseRI GAGGAG 1 cut(s) 8
BseSI GKGCMC 2 cut(s) 55, 641
BseXI GCAGC 4 cut(s) 226, 337, 359, 477
Bsh1236I CGCG 1 cut(s) 728
BshFI GGCC 8 cut(s) 35, 103, 207, 219, 285, 416, 476, 503
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 6 cut(s) 147, 282, 320, 354, 432, 458
BslFI GGGAC 3 cut(s) 299, 526, 708
BslI CCNNNNNNNGG 5 cut(s) 31, 203, 214, 425, 510
BsmFI GGGAC 3 cut(s) 299, 526, 708
BsnI GGCC 8 cut(s) 35, 103, 207, 219, 285, 416, 476, 503
Bsp1286I GDGCHC 2 cut(s) 55, 641
Bsp143I GATC 2 cut(s) 66, 621
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 9 cut(s) 59, 208, 237, 276, 357, 419, 485, 726, 728
BspANI GGCC 8 cut(s) 35, 103, 207, 219, 285, 416, 476, 503
BspCNI CTCAG 2 cut(s) 33, 655
BspFNI CGCG 1 cut(s) 728
BspLI GGNNCC 7 cut(s) 109, 169, 218, 280, 417, 430, 514
BspMI ACCTGC 1 cut(s) 38
BspOI GCTAGC 1 cut(s) 161
BsrFI RCCGGY 4 cut(s) 146, 319, 353, 431
BsrI ACTGG 2 cut(s) 191, 634
BssAI RCCGGY 4 cut(s) 146, 319, 353, 431
BssECI CCNNGG 4 cut(s) 30, 197, 411, 726
BssMI GATC 2 cut(s) 66, 621
BssNI GRCGYC 2 cut(s) 180, 375
BssT1I CCWWGG 2 cut(s) 30, 197
Bst2UI CCWGG 3 cut(s) 105, 287, 383
Bst4CI ACNGT 3 cut(s) 97, 517, 566
Bst6I CTCTTC 1 cut(s) 454
BstACI GRCGYC 2 cut(s) 180, 375
BstC8I GCNNGC 4 cut(s) 159, 355, 443, 526
BstDEI CTNAG 3 cut(s) 20, 618, 642
BstDSI CCRYGG 3 cut(s) 197, 411, 726
BstFNI CGCG 1 cut(s) 728
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 3 cut(s) 263, 311, 536
BstKTI GATC 2 cut(s) 69, 624
BstMBI GATC 2 cut(s) 66, 621
BstMWI GCNNNNNNNGC 6 cut(s) 59, 167, 216, 282, 482, 542
BstNI CCWGG 3 cut(s) 105, 287, 383
BstNSI RCATGY 4 cut(s) 59, 297, 600, 690
BstSCI CCNGG 4 cut(s) 103, 285, 381, 456
BstSLI GKGCMC 2 cut(s) 55, 641
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 4 cut(s) 226, 337, 359, 477
BstX2I RGATCY 1 cut(s) 621
BstXI CCANNNNNNTGG 2 cut(s) 198, 412
BstYI RGATCY 1 cut(s) 621
Bsu36I CCTNAGG 1 cut(s) 642
BsuRI GGCC 8 cut(s) 35, 103, 207, 219, 285, 416, 476, 503
BtgI CCRYGG 3 cut(s) 197, 411, 726
BtgZI GCGATG 1 cut(s) 328
BtrI CACGTC 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 641
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 4 cut(s) 159, 355, 443, 526
CfoI GCGC 3 cut(s) 263, 311, 536
Cfr10I RCCGGY 4 cut(s) 146, 319, 353, 431
Cfr13I GGNCC 5 cut(s) 217, 415, 513, 631, 698
Cfr42I CCGCGG 1 cut(s) 729
Csp6I GTAC 2 cut(s) 14, 562
CviAII CATG 8 cut(s) 56, 198, 294, 406, 453, 597, 687, 732
CviQI GTAC 2 cut(s) 14, 562
DdeI CTNAG 3 cut(s) 20, 618, 642
DpnI GATC 2 cut(s) 68, 623
DpnII GATC 2 cut(s) 66, 621
EaeI YGGCCR 3 cut(s) 33, 101, 283
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
Eco130I CCWWGG 2 cut(s) 30, 197
Eco147I AGGCCT 1 cut(s) 476
Eco47I GGWCC 3 cut(s) 513, 631, 698
Eco47III AGCGCT 1 cut(s) 535
Eco81I CCTNAGG 1 cut(s) 642
EcoRII CCWGG 3 cut(s) 103, 285, 381
EcoT14I CCWWGG 2 cut(s) 30, 197
ErhI CCWWGG 2 cut(s) 30, 197
FaeI CATG 8 cut(s) 59, 201, 297, 409, 456, 600, 690, 735
FaqI GGGAC 3 cut(s) 299, 526, 708
FatI CATG 8 cut(s) 55, 197, 293, 405, 452, 596, 686, 731
FauI CCCGC 2 cut(s) 426, 733
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 8 cut(s) 60, 208, 240, 277, 348, 351, 491, 729
Fsp4HI GCNGC 8 cut(s) 60, 208, 240, 277, 348, 351, 491, 729
FspBI CTAG 2 cut(s) 158, 329
GlaI GCGC 3 cut(s) 262, 310, 535
GluI GCNGC 8 cut(s) 60, 208, 240, 277, 348, 351, 491, 729
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 8 cut(s) 35, 103, 207, 219, 285, 416, 476, 503
HapII CCGG 6 cut(s) 147, 282, 320, 354, 432, 458
HhaI GCGC 3 cut(s) 263, 311, 536
Hin1I GRCGYC 2 cut(s) 180, 375
Hin1II CATG 8 cut(s) 59, 201, 297, 409, 456, 600, 690, 735
Hin6I GCGC 3 cut(s) 261, 309, 534
HinP1I GCGC 3 cut(s) 261, 309, 534
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HpaII CCGG 6 cut(s) 147, 282, 320, 354, 432, 458
HphI GGTGA 5 cut(s) 19, 61, 67, 106, 175
Hpy166II GTNNAC 5 cut(s) 53, 388, 469, 684, 698
Hpy188I TCNGA 2 cut(s) 121, 579
Hpy188III TCNNGA 2 cut(s) 362, 590
Hpy8I GTNNAC 5 cut(s) 53, 388, 469, 684, 698
Hpy99I CGWCG 5 cut(s) 248, 377, 392, 509, 512
HpyAV CCTTC 2 cut(s) 82, 493
HpyCH4III ACNGT 3 cut(s) 97, 517, 566
HpyCH4IV ACGT 4 cut(s) 180, 375, 465, 680
HpyCH4V TGCA 6 cut(s) 53, 297, 441, 493, 528, 570
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 167, 216, 282, 482, 542
HpyF3I CTNAG 3 cut(s) 20, 618, 642
HpySE526I ACGT 4 cut(s) 180, 375, 465, 680
Hsp92I GRCGYC 2 cut(s) 180, 375
Hsp92II CATG 8 cut(s) 59, 201, 297, 409, 456, 600, 690, 735
HspAI GCGC 3 cut(s) 261, 309, 534
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
KspI CCGCGG 1 cut(s) 729
Kzo9I GATC 2 cut(s) 66, 621
LmnI GCTCC 4 cut(s) 167, 236, 284, 487
Lsp1109I GCAGC 4 cut(s) 226, 337, 359, 477
LweI GCATC 1 cut(s) 218
MaeI CTAG 2 cut(s) 158, 329
MaeII ACGT 4 cut(s) 180, 375, 465, 680
MaeIII GTNAC 2 cut(s) 181, 289
MalI GATC 2 cut(s) 68, 623
MboI GATC 2 cut(s) 66, 621
MboII GAAGA 2 cut(s) 34, 441
MflI RGATCY 1 cut(s) 621
MhlI GDGCHC 2 cut(s) 55, 641
MlsI TGGCCA 2 cut(s) 35, 103
MluNI TGGCCA 2 cut(s) 35, 103
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 9 cut(s) 29, 35, 122, 127, 457, 585, 612, 622, 651
Mox20I TGGCCA 2 cut(s) 35, 103
MroNI GCCGGC 1 cut(s) 353
MscI TGGCCA 2 cut(s) 35, 103
MslI CAYNNNNRTG 1 cut(s) 410
Msp20I TGGCCA 2 cut(s) 35, 103
MspA1I CMGCKG 4 cut(s) 239, 269, 350, 728
MspI CCGG 6 cut(s) 147, 282, 320, 354, 432, 458
MspR9I CCNGG 4 cut(s) 105, 287, 383, 458
MvaI CCWGG 3 cut(s) 105, 287, 383
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 6 cut(s) 59, 167, 216, 282, 482, 542
NaeI GCCGGC 1 cut(s) 355
NciI CCSGG 1 cut(s) 458
NcoI CCATGG 1 cut(s) 197
NdeII GATC 2 cut(s) 66, 621
NgoMIV GCCGGC 1 cut(s) 353
NheI GCTAGC 1 cut(s) 157
NlaIII CATG 8 cut(s) 59, 201, 297, 409, 456, 600, 690, 735
NlaIV GGNNCC 7 cut(s) 109, 169, 218, 280, 417, 430, 514
NmuCI GTSAC 2 cut(s) 181, 289
NspI RCATGY 4 cut(s) 59, 297, 600, 690
PaqCI CACCTGC 1 cut(s) 38
PceI AGGCCT 1 cut(s) 476
PciI ACATGT 1 cut(s) 596
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PdiI GCCGGC 1 cut(s) 355
PkrI GCNGC 8 cut(s) 61, 209, 241, 278, 349, 352, 492, 730
PscI ACATGT 1 cut(s) 596
Psp6I CCWGG 3 cut(s) 103, 285, 381
PspGI CCWGG 3 cut(s) 103, 285, 381
PspN4I GGNNCC 7 cut(s) 109, 169, 218, 280, 417, 430, 514
PspPI GGNCC 5 cut(s) 217, 415, 513, 631, 698
PsuI RGATCY 1 cut(s) 621
PvuII CAGCTG 2 cut(s) 269, 350
RsaI GTAC 2 cut(s) 15, 563
RsaNI GTAC 2 cut(s) 14, 562
RseI CAYNNNNRTG 1 cut(s) 410
SacII CCGCGG 1 cut(s) 729
SalI GTCGAC 1 cut(s) 386
SatI GCNGC 8 cut(s) 60, 208, 240, 277, 348, 351, 491, 729
Sau3AI GATC 2 cut(s) 66, 621
Sau96I GGNCC 5 cut(s) 217, 415, 513, 631, 698
ScaI AGTACT 2 cut(s) 15, 563
ScrFI CCNGG 4 cut(s) 105, 287, 383, 458
SduI GDGCHC 2 cut(s) 55, 641
SfaNI GCATC 1 cut(s) 218
Sfr303I CCGCGG 1 cut(s) 729
SgrBI CCGCGG 1 cut(s) 729
SinI GGWCC 3 cut(s) 513, 631, 698
SmiMI CAYNNNNRTG 1 cut(s) 410
SseBI AGGCCT 1 cut(s) 476
SsiI CCGC 9 cut(s) 59, 208, 237, 276, 357, 419, 485, 726, 728
SspMI CTAG 2 cut(s) 158, 329
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 4 cut(s) 103, 285, 381, 456
StyI CCWWGG 2 cut(s) 30, 197
TaaI ACNGT 3 cut(s) 97, 517, 566
TaiI ACGT 4 cut(s) 183, 378, 468, 683
TaqI TCGA 3 cut(s) 153, 333, 387
TatI WGTACW 2 cut(s) 13, 561
TauI GCSGC 4 cut(s) 62, 210, 279, 731
TscAI CASTG 1 cut(s) 641
TseFI GTSAC 2 cut(s) 181, 289
TseI GCWGC 4 cut(s) 239, 347, 350, 490
Tsp45I GTSAC 2 cut(s) 181, 289
TspDTI ATGAA 2 cut(s) 17, 441
TspGWI ACGGA 2 cut(s) 261, 400
TspRI CASTG 1 cut(s) 641
VneI GTGCAC 1 cut(s) 51
VpaK11BI GGWCC 3 cut(s) 513, 631, 698
XceI RCATGY 4 cut(s) 59, 297, 600, 690
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 2 cut(s) 158, 329
ZraI GACGTC 2 cut(s) 181, 376
ZrmI AGTACT 2 cut(s) 15, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.