Rroxscaffold_6G00397880

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000594
Physical Location & Seq
Forward (+)
19630010 .. 19632194
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397880.1

Sequence Viewer

Length: 783 bp
ATGCGTTTAAGACCGCTACCGCGTACTGCTTGGAAGGTACCTCCAACTGTTCATGGTGGCGACACTCAAAACAGATCCGGTGAAACCAATTCGTTGATGCCTTTATTCTTGTGTCACTTGTGTGGTAGAGGTGAATGCGCGGACATACGGCTACAATTTCTTTCTGATAACAAACCTCAGTTAGCATTGACGGGGTTCGAGTTAGCACCCCAAGCTAGCAGATCCATAGACACTCCGGTTCCATGGAATGGCCGCTTCTGGGGCCGTACCAACTGCTTCACGGACAATTCAGGAATGTTCACTTGTGACAAACCAGGGGATTGCGCATCCGGTCAGGTCCCATGCAACGGAAAAGGAGGAATTCCGCCAGCCACGTTGGTGGAAATTAATATCCCAGCAGGTGGGGGTCAAGATTTCTACGATGTTAGTCTTGTTGACGGCTTCAACTTGCCCATCTCCGTAACCCCTCAAGGCGGTCACGCTCCCGGGGACTGTCGGAGCTCCAGCTGCAGCGCCAACGTGAACGCTATGTGTCCGAGTGAGCTACAAGTAACGGGGGCTGGCGGGAGCGTGGTTGGCTGCATGAGCGCGTGCGTGAAGTTCAATGAGCCCAAGTATTGCTGCACTACACCTAATGAAAAGCCAGAGACATGTCCTCCTACAGACCACTCTATGAAGTTTAGTCAACAATGCCCTGAGGCTTACAGCTACGCTTATGATGACAAGAAAGGGACATTCACTTGCTCTGGGGGACCTAACTACGCTATTACTTTCTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

260

Amino Acids

27.71

Weight (kDa)

5.79

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 57 - 260 2.4e-68 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 389
Acc16I TGCGCA 1 cut(s) 325
Acc36I ACCTGC 1 cut(s) 389
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 37
AccB7I CCANNNNNTGG 2 cut(s) 248, 401
AccII CGCG 3 cut(s) 22, 140, 590
AciI CCGC 7 cut(s) 14, 20, 140, 253, 365, 474, 564
AclWI GGATC 2 cut(s) 69, 216
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 360
AfaI GTAC 3 cut(s) 25, 39, 268
AfiI CCNNNNNNNGG 5 cut(s) 248, 259, 347, 401, 473
AflIII ACRYGT 1 cut(s) 650
AgsI TTSAA 2 cut(s) 445, 604
AjnI CCWGG 1 cut(s) 313
AleI CACNNNNGTG 2 cut(s) 120, 377
AluBI AGCT 5 cut(s) 215, 501, 507, 544, 708
AluI AGCT 5 cut(s) 215, 501, 507, 544, 708
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 2 cut(s) 69, 216
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 2 cut(s) 250, 262
ApeKI GCWGC 4 cut(s) 507, 510, 579, 621
ApoI RAATTY 1 cut(s) 360
AseI ATTAAT 1 cut(s) 387
Asp718I GGTACC 1 cut(s) 37
AspLEI GCGC 4 cut(s) 140, 326, 515, 590
AspS9I GGNCC 3 cut(s) 262, 337, 752
AsuC2I CCSGG 2 cut(s) 486, 487
AsuHPI GGTGA 2 cut(s) 92, 143
AsuNHI GCTAGC 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 2 cut(s) 337, 752
AxyI CCTNAGG 1 cut(s) 696
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 2 cut(s) 503, 612
Bbv12I GWGCWC 1 cut(s) 503
BbvI GCAGC 4 cut(s) 494, 522, 566, 608
BccI CCATC 1 cut(s) 461
BceAI ACGGC 3 cut(s) 164, 249, 454
BciT130I CCWGG 1 cut(s) 315
BcnI CCSGG 2 cut(s) 486, 487
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 2 cut(s) 508, 660
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 5 cut(s) 253, 508, 511, 580, 622
BlsI GCNGC 5 cut(s) 254, 509, 512, 581, 623
Bme1390I CCNGG 3 cut(s) 315, 486, 487
Bme18I GGWCC 2 cut(s) 337, 752
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 3 cut(s) 262, 337, 752
BmiI GGNNCC 5 cut(s) 39, 240, 263, 339, 753
BmrFI CCNGG 3 cut(s) 315, 486, 487
BmsI GCATC 2 cut(s) 87, 335
BmtI GCTAGC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 487
BpuEI CTTGAG 1 cut(s) 453
BpuMI CCSGG 2 cut(s) 486, 487
BsaJI CCNNGG 4 cut(s) 242, 314, 485, 486
BsaWI WCCGGW 3 cut(s) 77, 235, 329
BsaXI ACNNNNNCTCC 2 cut(s) 640, 670
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 259, 347, 401, 473
Bse21I CCTNAGG 1 cut(s) 696
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 4 cut(s) 242, 314, 485, 486
BseGI GGATG 1 cut(s) 326
BseLI CCNNNNNNNGG 5 cut(s) 248, 259, 347, 401, 473
BseMII CTCAG 2 cut(s) 191, 687
BseXI GCAGC 4 cut(s) 494, 522, 566, 608
BseYI CCCAGC 1 cut(s) 394
BsgI GTGCAG 1 cut(s) 607
Bsh1236I CGCG 3 cut(s) 22, 140, 590
BshFI GGCC 2 cut(s) 252, 264
BshNI GGYRCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 503
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 4 cut(s) 78, 236, 330, 486
BslFI GGGAC 4 cut(s) 323, 503, 745, 765
BslI CCNNNNNNNGG 5 cut(s) 248, 259, 347, 401, 473
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 4 cut(s) 323, 503, 745, 765
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 2 cut(s) 252, 264
BsoBI CYCGRG 1 cut(s) 485
Bsp1286I GDGCHC 2 cut(s) 503, 612
Bsp143I GATC 2 cut(s) 74, 221
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 7 cut(s) 14, 20, 140, 253, 365, 474, 564
BspANI GGCC 2 cut(s) 252, 264
BspCNI CTCAG 2 cut(s) 190, 688
BspFNI CGCG 3 cut(s) 22, 140, 590
BspLI GGNNCC 5 cut(s) 39, 240, 263, 339, 753
BspMAI CTGCAG 1 cut(s) 512
BspMI ACCTGC 1 cut(s) 389
BspOI GCTAGC 1 cut(s) 219
BspPI GGATC 2 cut(s) 69, 216
BspT107I GGYRCC 1 cut(s) 37
BssECI CCNNGG 4 cut(s) 242, 314, 485, 486
BssMI GATC 2 cut(s) 74, 221
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 49, 494
BstC8I GCNNGC 4 cut(s) 217, 369, 562, 592
BstDEI CTNAG 2 cut(s) 177, 696
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 326
BstFNI CGCG 3 cut(s) 22, 140, 590
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 4 cut(s) 140, 326, 515, 590
BstKTI GATC 2 cut(s) 77, 224
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 2 cut(s) 74, 221
BstMWI GCNNNNNNNGC 5 cut(s) 212, 261, 507, 576, 585
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 654
BstSCI CCNGG 3 cut(s) 313, 484, 485
BstSFI CTRYAG 2 cut(s) 508, 660
BstUI CGCG 3 cut(s) 22, 140, 590
BstV1I GCAGC 4 cut(s) 494, 522, 566, 608
BstX2I RGATCY 2 cut(s) 74, 221
BstXI CCANNNNNNTGG 1 cut(s) 379
BstYI RGATCY 2 cut(s) 74, 221
Bsu36I CCTNAGG 1 cut(s) 696
BsuRI GGCC 2 cut(s) 252, 264
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 326
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 4 cut(s) 217, 369, 562, 592
CfoI GCGC 4 cut(s) 140, 326, 515, 590
Cfr13I GGNCC 3 cut(s) 262, 337, 752
Cfr9I CCCGGG 1 cut(s) 485
Csp6I GTAC 3 cut(s) 24, 38, 267
CviAII CATG 5 cut(s) 53, 243, 342, 583, 651
CviQI GTAC 3 cut(s) 24, 38, 267
DdeI CTNAG 2 cut(s) 177, 696
DpnI GATC 2 cut(s) 76, 223
DpnII GATC 2 cut(s) 74, 221
EaeI YGGCCR 1 cut(s) 250
EciI GGCGGA 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 2 cut(s) 503, 612
Eco47I GGWCC 2 cut(s) 337, 752
Eco53kI GAGCTC 1 cut(s) 501
Eco81I CCTNAGG 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 501
EcoO109I RGGNCCY 2 cut(s) 337, 752
EcoRI GAATTC 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 2 cut(s) 503, 612
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 5 cut(s) 56, 246, 345, 586, 654
FaqI GGGAC 4 cut(s) 323, 503, 745, 765
FatI CATG 5 cut(s) 52, 242, 341, 582, 650
FauI CCCGC 1 cut(s) 557
Fnu4HI GCNGC 5 cut(s) 253, 508, 511, 580, 622
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 2 cut(s) 503, 612
Fsp4HI GCNGC 5 cut(s) 253, 508, 511, 580, 622
FspBI CTAG 1 cut(s) 216
FspI TGCGCA 1 cut(s) 325
GlaI GCGC 4 cut(s) 139, 325, 514, 589
GluI GCNGC 5 cut(s) 253, 508, 511, 580, 622
GsaI CCCAGC 1 cut(s) 398
GsuI CTGGAG 1 cut(s) 487
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 2 cut(s) 252, 264
HapII CCGG 4 cut(s) 78, 236, 330, 486
HhaI GCGC 4 cut(s) 140, 326, 515, 590
Hin1II CATG 5 cut(s) 56, 246, 345, 586, 654
Hin6I GCGC 4 cut(s) 138, 324, 513, 588
HinP1I GCGC 4 cut(s) 138, 324, 513, 588
HincII GTYRAC 2 cut(s) 436, 686
HindII GTYRAC 2 cut(s) 436, 686
HpaII CCGG 4 cut(s) 78, 236, 330, 486
HphI GGTGA 2 cut(s) 92, 143
Hpy166II GTNNAC 4 cut(s) 300, 436, 523, 686
Hpy188I TCNGA 3 cut(s) 166, 498, 537
Hpy188III TCNNGA 2 cut(s) 291, 410
Hpy8I GTNNAC 4 cut(s) 300, 436, 523, 686
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 2 cut(s) 49, 494
HpyCH4IV ACGT 2 cut(s) 374, 519
HpyCH4V TGCA 4 cut(s) 345, 510, 582, 624
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 261, 507, 576, 585
HpyF3I CTNAG 2 cut(s) 177, 696
HpySE526I ACGT 2 cut(s) 374, 519
Hsp92II CATG 5 cut(s) 56, 246, 345, 586, 654
HspAI GCGC 4 cut(s) 138, 324, 513, 588
KpnI GGTACC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 74, 221
LmnI GCTCC 4 cut(s) 487, 498, 506, 567
Lsp1109I GCAGC 4 cut(s) 494, 522, 566, 608
LweI GCATC 2 cut(s) 87, 335
MaeI CTAG 1 cut(s) 216
MaeII ACGT 2 cut(s) 374, 519
MaeIII GTNAC 5 cut(s) 113, 305, 460, 476, 550
MalI GATC 2 cut(s) 76, 223
MboI GATC 2 cut(s) 74, 221
MflI RGATCY 2 cut(s) 74, 221
MhlI GDGCHC 2 cut(s) 503, 612
MluCI AATT 5 cut(s) 88, 155, 286, 360, 384
MmeI TCCRAC 2 cut(s) 68, 476
MnlI CCTC 7 cut(s) 51, 122, 186, 350, 477, 666, 691
MseI TTAA 2 cut(s) 8, 387
MslI CAYNNNNRTG 2 cut(s) 120, 377
MspA1I CMGCKG 1 cut(s) 507
MspI CCGG 4 cut(s) 78, 236, 330, 486
MspR9I CCNGG 3 cut(s) 315, 486, 487
Mva1269I GAATGC 1 cut(s) 140
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 3 cut(s) 22, 140, 590
MwoI GCNNNNNNNGC 5 cut(s) 212, 261, 507, 576, 585
NciI CCSGG 2 cut(s) 486, 487
NcoI CCATGG 1 cut(s) 242
NdeII GATC 2 cut(s) 74, 221
NheI GCTAGC 1 cut(s) 215
NlaIII CATG 5 cut(s) 56, 246, 345, 586, 654
NlaIV GGNNCC 5 cut(s) 39, 240, 263, 339, 753
NmuCI GTSAC 3 cut(s) 113, 305, 476
NsbI TGCGCA 1 cut(s) 325
NspI RCATGY 1 cut(s) 654
OliI CACNNNNGTG 2 cut(s) 120, 377
PaqCI CACCTGC 1 cut(s) 389
PciI ACATGT 1 cut(s) 650
PctI GAATGC 1 cut(s) 140
PflMI CCANNNNNTGG 2 cut(s) 248, 401
PkrI GCNGC 5 cut(s) 254, 509, 512, 581, 623
PpuMI RGGWCCY 2 cut(s) 337, 752
PscI ACATGT 1 cut(s) 650
PshBI ATTAAT 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 503
Psp5II RGGWCCY 2 cut(s) 337, 752
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 5 cut(s) 39, 240, 263, 339, 753
PspPI GGNCC 3 cut(s) 262, 337, 752
PspPPI RGGWCCY 2 cut(s) 337, 752
PstI CTGCAG 1 cut(s) 512
PsuI RGATCY 2 cut(s) 74, 221
PvuII CAGCTG 1 cut(s) 507
RsaI GTAC 3 cut(s) 25, 39, 268
RsaNI GTAC 3 cut(s) 24, 38, 267
RseI CAYNNNNRTG 2 cut(s) 120, 377
SacI GAGCTC 1 cut(s) 503
SaqAI TTAA 2 cut(s) 8, 387
SatI GCNGC 5 cut(s) 253, 508, 511, 580, 622
Sau3AI GATC 2 cut(s) 74, 221
Sau96I GGNCC 3 cut(s) 262, 337, 752
ScrFI CCNGG 3 cut(s) 315, 486, 487
SduI GDGCHC 2 cut(s) 503, 612
SfaNI GCATC 2 cut(s) 87, 335
SfcI CTRYAG 2 cut(s) 508, 660
SinI GGWCC 2 cut(s) 337, 752
SmaI CCCGGG 1 cut(s) 487
SmiMI CAYNNNNRTG 2 cut(s) 120, 377
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 5 cut(s) 88, 155, 286, 360, 384
SsiI CCGC 7 cut(s) 14, 20, 140, 253, 365, 474, 564
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 1 cut(s) 503
StyD4I CCNGG 3 cut(s) 313, 484, 485
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 2 cut(s) 49, 494
TaiI ACGT 2 cut(s) 377, 522
TaqI TCGA 1 cut(s) 198
TasI AATT 5 cut(s) 88, 155, 286, 360, 384
TauI GCSGC 1 cut(s) 255
Tru1I TTAA 2 cut(s) 8, 387
Tru9I TTAA 2 cut(s) 8, 387
TseFI GTSAC 3 cut(s) 113, 305, 476
TseI GCWGC 4 cut(s) 507, 510, 579, 621
Tsp45I GTSAC 3 cut(s) 113, 305, 476
TspDTI ATGAA 3 cut(s) 41, 651, 689
TspGWI ACGGA 3 cut(s) 296, 363, 448
TspMI CCCGGG 1 cut(s) 485
Van91I CCANNNNNTGG 2 cut(s) 248, 401
VpaK11BI GGWCC 2 cut(s) 337, 752
VspI ATTAAT 1 cut(s) 387
XapI RAATTY 1 cut(s) 360
XceI RCATGY 1 cut(s) 654
XmaI CCCGGG 1 cut(s) 485
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.