MD16G1224000.v1.1

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000594
Physical Location & Seq
Reverse (-)
22534019 .. 22534570
552 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1224000.v1.1.491

Sequence Viewer

Length: 480 bp
ATGTTTGTTTGTGAAACTGCAGATTGCGCATCTGGCCAAGTCGCATGCAACGGTGCTGGTGCAATCCCACCAGCATCGTTGATAGAGTTGACACTTGCTCCAGGTGGAGGACAAGATTTCTACGATGTCAGCCTCGTCGATGGCTTCAACGTACGTATTGGAGTGGCTCCACAGGGAGGGTCAGGTGGATGTAGTGCGACGAGCTGCCCGGCTGATGTGAACAGTGTTTGCCCTGATGAATTGGGTATGAAAGGATCAGATGGGAGTGTGATTGCTTGCAAAAGTGCATGTTTGGCTTTCAATCAGCCGCAGTATTGTTGCACAGGTGCCTATGGGAGTCCTACGACGTGCCCTCCGACTGAATATTCAAAGATCTTCAAGCGCCAGTGCCCACAGGCTTATAGTTATGCTTATGATGATAAAACTAGCACTTTTACATGTACTGGCGGACCTGACTATGTGATAACATTTTGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

160

Amino Acids

16.3

Weight (kDa)

4.19

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 4 - 159 2.3e-59 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 326
AciI CCGC 2 cut(s) 308, 447
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 1 cut(s) 34
AfaI GTAC 2 cut(s) 153, 442
AfiI CCNNNNNNNGG 2 cut(s) 107, 176
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 4 cut(s) 148, 301, 369, 379
AjiI CACGTC 1 cut(s) 348
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
AlwI GGATC 1 cut(s) 262
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 204
AspLEI GCGC 2 cut(s) 29, 384
AspS9I GGNCC 1 cut(s) 449
AsuC2I CCSGG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 449
BaeGI GKGCMC 2 cut(s) 353, 392
BalI TGGCCA 1 cut(s) 36
BanI GGYRCC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 134, 254
BciT130I CCWGG 1 cut(s) 102
BcnI CCSGG 1 cut(s) 209
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 385
BglII AGATCT 1 cut(s) 372
BisI GCNGC 2 cut(s) 205, 308
BlsI GCNGC 2 cut(s) 206, 309
Bme1390I CCNGG 2 cut(s) 102, 209
Bme18I GGWCC 1 cut(s) 449
BmgBI CACGTC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 168, 328
BmrFI CCNGG 2 cut(s) 102, 209
BmsI GCATC 2 cut(s) 38, 83
BpmI CTGGAG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 155
BsaXI ACNNNNNCTCC 4 cut(s) 82, 112, 337, 367
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 176
Bse1I ACTGG 2 cut(s) 385, 448
BseBI CCWGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 2 cut(s) 107, 176
BseNI ACTGG 2 cut(s) 385, 448
BseSI GKGCMC 2 cut(s) 353, 392
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 326
BsiSI CCGG 1 cut(s) 209
BsiWI CGTACG 1 cut(s) 151
BslI CCNNNNNNNGG 2 cut(s) 107, 176
BsnI GGCC 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 353, 392
Bsp143I GATC 2 cut(s) 254, 372
BspACI CCGC 2 cut(s) 308, 447
BspANI GGCC 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 168, 328
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 326
BsrI ACTGG 2 cut(s) 385, 448
BssMI GATC 2 cut(s) 254, 372
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 53, 224
BstBAI YACGTR 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 46, 277
BstF5I GGATG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 2 cut(s) 29, 384
BstKTI GATC 2 cut(s) 257, 375
BstMBI GATC 2 cut(s) 254, 372
BstMWI GCNNNNNNNGC 3 cut(s) 26, 33, 293
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 3 cut(s) 48, 291, 441
BstSCI CCNGG 2 cut(s) 100, 207
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 2 cut(s) 353, 392
BstSNI TACGTA 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 1 cut(s) 36
BtrI CACGTC 1 cut(s) 348
BtsCI GGATG 1 cut(s) 194
BtsIMutI CAGTG 2 cut(s) 229, 392
Cac8I GCNNGC 2 cut(s) 46, 277
CfoI GCGC 2 cut(s) 29, 384
Cfr13I GGNCC 1 cut(s) 449
Csp6I GTAC 2 cut(s) 152, 441
CviAII CATG 3 cut(s) 45, 288, 438
CviJI RGCY 9 cut(s) 36, 132, 144, 167, 204, 212, 296, 307, 398
CviKI_1 RGCY 9 cut(s) 36, 132, 144, 167, 204, 212, 296, 307, 398
CviQI GTAC 2 cut(s) 152, 441
DpnI GATC 2 cut(s) 256, 374
DpnII GATC 2 cut(s) 254, 372
EaeI YGGCCR 1 cut(s) 34
EciI GGCGGA 1 cut(s) 462
Eco105I TACGTA 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 100
FaeI CATG 3 cut(s) 48, 291, 441
FaiI YATR 9 cut(s) 46, 248, 289, 333, 402, 408, 414, 439, 459
FatI CATG 3 cut(s) 44, 287, 437
Fnu4HI GCNGC 2 cut(s) 205, 308
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 205, 308
FspBI CTAG 1 cut(s) 426
FspI TGCGCA 1 cut(s) 28
GlaI GCGC 2 cut(s) 28, 383
GluI GCNGC 2 cut(s) 205, 308
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 1 cut(s) 36
HapII CCGG 1 cut(s) 209
HhaI GCGC 2 cut(s) 29, 384
Hin1II CATG 3 cut(s) 48, 291, 441
Hin6I GCGC 2 cut(s) 27, 382
HinP1I GCGC 2 cut(s) 27, 382
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 337
HpaII CCGG 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 90, 220
Hpy188I TCNGA 2 cut(s) 259, 357
Hpy8I GTNNAC 2 cut(s) 90, 220
Hpy99I CGWCG 3 cut(s) 140, 202, 349
HpyCH4III ACNGT 2 cut(s) 53, 224
HpyCH4IV ACGT 3 cut(s) 150, 154, 347
HpyCH4V TGCA 6 cut(s) 20, 48, 62, 279, 287, 321
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 33, 293
HpySE526I ACGT 3 cut(s) 150, 154, 347
Hsp92II CATG 3 cut(s) 48, 291, 441
HspAI GCGC 2 cut(s) 27, 382
Kzo9I GATC 2 cut(s) 254, 372
LmnI GCTCC 2 cut(s) 103, 172
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 2 cut(s) 38, 83
MaeI CTAG 1 cut(s) 426
MaeII ACGT 3 cut(s) 150, 154, 347
MalI GATC 2 cut(s) 256, 374
MboI GATC 2 cut(s) 254, 372
MboII GAAGA 1 cut(s) 367
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 353, 392
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 1 cut(s) 239
MluNI TGGCCA 1 cut(s) 36
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 380
MnlI CCTC 4 cut(s) 101, 143, 170, 363
Mox20I TGGCCA 1 cut(s) 36
MscI TGGCCA 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 36
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 102, 209
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 26, 33, 293
NciI CCSGG 1 cut(s) 209
NdeII GATC 2 cut(s) 254, 372
NlaIII CATG 3 cut(s) 48, 291, 441
NlaIV GGNNCC 2 cut(s) 168, 328
NsbI TGCGCA 1 cut(s) 28
NspI RCATGY 3 cut(s) 48, 291, 441
PaeI GCATGC 1 cut(s) 48
PciI ACATGT 1 cut(s) 437
PcsI WCGNNNNNNNCGW 1 cut(s) 353
Pfl23II CGTACG 1 cut(s) 151
PkrI GCNGC 2 cut(s) 206, 309
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Ppu21I YACGTR 1 cut(s) 155
PscI ACATGT 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspLI CGTACG 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 168, 328
PspPI GGNCC 1 cut(s) 449
PstI CTGCAG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 2 cut(s) 153, 442
RsaNI GTAC 2 cut(s) 152, 441
SatI GCNGC 2 cut(s) 205, 308
Sau3AI GATC 2 cut(s) 254, 372
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 102, 209
SduI GDGCHC 2 cut(s) 353, 392
SetI ASST 8 cut(s) 106, 153, 157, 187, 206, 328, 350, 454
SfaNI GCATC 2 cut(s) 38, 83
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 449
SnaBI TACGTA 1 cut(s) 155
SphI GCATGC 1 cut(s) 48
Sse9I AATT 1 cut(s) 239
SsiI CCGC 2 cut(s) 308, 447
SspI AATATT 1 cut(s) 365
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 2 cut(s) 100, 207
TaaI ACNGT 2 cut(s) 53, 224
TaiI ACGT 3 cut(s) 153, 157, 350
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 239
TatI WGTACW 1 cut(s) 440
TauI GCSGC 1 cut(s) 310
TscAI CASTG 2 cut(s) 229, 392
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 2 cut(s) 252, 263
TspRI CASTG 2 cut(s) 229, 392
VpaK11BI GGWCC 1 cut(s) 449
XceI RCATGY 3 cut(s) 48, 291, 441
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.