RchiOBHm_Chr3g0484231

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000594
Physical Location & Seq
Reverse (-)
30556940 .. 30557641
702 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44894

Sequence Viewer

Length: 702 bp
ATGCATGCAGGCGCACATCCGGCAACAATTTCTTTCACAAACAAGTGCGCCTTCAAGGTCTGGCCAGCAACCCTAACTTCTGATGATGATAAACCTCAGTTAGCATCGACGGGGTTCGAGTTAGCACCCCAAGCTAGCAATTCCATAGACACTCCGATTCCATGGTATGGCCGCTTCTGGGGCCGTACCAATTGCTTCACGGACAATTTAGGAATGTTCACTTGTGACAAACCAGGGGATTGCGCATCCGGTCAGGTCTCATGCAACGGAAAAGGAGGAAATAAGCCAGCCACGTTGGTGGAAATTAATATCCCAGCAGGTGGGGGTCAAGATTTCTACGATGTTAGTCTTGTTGACGGCTTCAACTTGCCCATCTCCGTAGCAGCTCAAGGCGGTCACGCTCCAGGGGACTGTCGGAGCTCTAGCTGCAGCGCCAACGTGAATGCTATGTGTCCGAGTGAGCTACAAGTAACGGGGGCTGGCGGGAGCGTGGTTGGCTGCATGAGCGCGTGCACGAAGTTCAATGAGCCCAAGTACTGCTGCACTCCACCTAATGAAAAGCCAGAGACATGTCCTCCTACAGACTACTCTATGAAGTTTAGTCAACAATGCCCTGAGGCTTACAGCTACGCTTATGATGACAAGAAAGGCACATTCACTTGCTCCGGGGGACCTAACTACGCTATTACTTTCTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

233

Amino Acids

24.55

Weight (kDa)

4.95

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 14 - 233 8.1e-73 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 308
Acc16I TGCGCA 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 308
AccB7I CCANNNNNTGG 2 cut(s) 167, 320
AccII CGCG 1 cut(s) 509
AciI CCGC 3 cut(s) 172, 393, 483
AcoI YGGCCR 2 cut(s) 62, 169
AfaI GTAC 2 cut(s) 187, 536
AfiI CCNNNNNNNGG 3 cut(s) 167, 178, 320
AflIII ACRYGT 1 cut(s) 569
AgsI TTSAA 3 cut(s) 55, 364, 523
AjnI CCWGG 2 cut(s) 232, 403
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 6 cut(s) 134, 386, 420, 426, 463, 627
AluI AGCT 6 cut(s) 134, 386, 420, 426, 463, 627
Alw21I GWGCWC 2 cut(s) 422, 515
Alw26I GTCTC 2 cut(s) 262, 560
Alw44I GTGCAC 1 cut(s) 511
AoxI GGCC 3 cut(s) 62, 169, 181
ApaLI GTGCAC 1 cut(s) 511
ApeKI GCWGC 5 cut(s) 383, 426, 429, 498, 540
AseI ATTAAT 1 cut(s) 306
AspLEI GCGC 5 cut(s) 14, 50, 245, 434, 509
AspS9I GGNCC 2 cut(s) 181, 671
AsuC2I CCSGG 1 cut(s) 667
AsuNHI GCTAGC 1 cut(s) 134
AvaII GGWCC 1 cut(s) 671
AxyI CCTNAGG 1 cut(s) 615
BaeGI GKGCMC 1 cut(s) 515
BalI TGGCCA 1 cut(s) 64
BanII GRGCYC 2 cut(s) 422, 531
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
Bbv12I GWGCWC 2 cut(s) 422, 515
BbvI GCAGC 5 cut(s) 395, 413, 441, 485, 527
BccI CCATC 1 cut(s) 380
BceAI ACGGC 2 cut(s) 168, 373
BciT130I CCWGG 2 cut(s) 234, 405
BcnI CCSGG 1 cut(s) 667
BcoDI GTCTC 2 cut(s) 262, 560
BfaI CTAG 2 cut(s) 135, 423
BfmI CTRYAG 2 cut(s) 427, 579
BfoI RGCGCY 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 6 cut(s) 172, 384, 427, 430, 499, 541
BlsI GCNGC 6 cut(s) 173, 385, 428, 431, 500, 542
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 3 cut(s) 234, 405, 667
Bme18I GGWCC 1 cut(s) 671
BmgT120I GGNCC 2 cut(s) 181, 671
BmiI GGNNCC 2 cut(s) 182, 672
BmrFI CCNGG 3 cut(s) 234, 405, 667
BmsI GCATC 2 cut(s) 113, 254
BmtI GCTAGC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 4 cut(s) 161, 233, 404, 666
BsaWI WCCGGW 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 559, 589
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 178, 320
Bse21I CCTNAGG 1 cut(s) 615
BseBI CCWGG 2 cut(s) 234, 405
BseDI CCNNGG 4 cut(s) 161, 233, 404, 666
BseGI GGATG 2 cut(s) 16, 245
BseLI CCNNNNNNNGG 3 cut(s) 167, 178, 320
BseMII CTCAG 2 cut(s) 110, 606
BseSI GKGCMC 1 cut(s) 515
BseXI GCAGC 5 cut(s) 395, 413, 441, 485, 527
BseYI CCCAGC 1 cut(s) 313
BsgI GTGCAG 1 cut(s) 526
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 3 cut(s) 64, 171, 183
BsiHKAI GWGCWC 2 cut(s) 422, 515
BsiSI CCGG 3 cut(s) 20, 249, 666
BslFI GGGAC 2 cut(s) 422, 684
BslI CCNNNNNNNGG 3 cut(s) 167, 178, 320
BsmAI GTCTC 2 cut(s) 262, 560
BsmFI GGGAC 2 cut(s) 422, 684
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 3 cut(s) 64, 171, 183
Bso31I GGTCTC 1 cut(s) 262
Bsp1286I GDGCHC 3 cut(s) 422, 515, 531
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 3 cut(s) 172, 393, 483
BspANI GGCC 3 cut(s) 64, 171, 183
BspCNI CTCAG 2 cut(s) 109, 607
BspFNI CGCG 1 cut(s) 509
BspLI GGNNCC 2 cut(s) 182, 672
BspMAI CTGCAG 1 cut(s) 431
BspMI ACCTGC 1 cut(s) 308
BspOI GCTAGC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 262
BssECI CCNNGG 4 cut(s) 161, 233, 404, 666
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 2 cut(s) 234, 405
Bst4CI ACNGT 1 cut(s) 413
BstC8I GCNNGC 7 cut(s) 6, 10, 66, 136, 288, 481, 511
BstDEI CTNAG 2 cut(s) 96, 615
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 16, 245
BstFNI CGCG 1 cut(s) 509
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 5 cut(s) 14, 50, 245, 434, 509
BstMAI GTCTC 2 cut(s) 262, 560
BstMWI GCNNNNNNNGC 6 cut(s) 20, 131, 180, 426, 495, 504
BstNI CCWGG 2 cut(s) 234, 405
BstNSI RCATGY 2 cut(s) 8, 573
BstSCI CCNGG 3 cut(s) 232, 403, 665
BstSFI CTRYAG 2 cut(s) 427, 579
BstSLI GKGCMC 1 cut(s) 515
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 5 cut(s) 395, 413, 441, 485, 527
BstXI CCANNNNNNTGG 1 cut(s) 298
Bsu36I CCTNAGG 1 cut(s) 615
BsuRI GGCC 3 cut(s) 64, 171, 183
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 2 cut(s) 16, 245
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 7 cut(s) 6, 10, 66, 136, 288, 481, 511
CfoI GCGC 5 cut(s) 14, 50, 245, 434, 509
Cfr13I GGNCC 2 cut(s) 181, 671
Csp6I GTAC 2 cut(s) 186, 535
CviAII CATG 5 cut(s) 5, 162, 261, 502, 570
CviQI GTAC 2 cut(s) 186, 535
DdeI CTNAG 2 cut(s) 96, 615
EaeI YGGCCR 2 cut(s) 62, 169
Ecl136II GAGCTC 1 cut(s) 420
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 2 cut(s) 422, 531
Eco31I GGTCTC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 671
Eco53kI GAGCTC 1 cut(s) 420
Eco81I CCTNAGG 1 cut(s) 615
EcoICRI GAGCTC 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 671
EcoRII CCWGG 2 cut(s) 232, 403
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 422, 531
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 5 cut(s) 8, 165, 264, 505, 573
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 2 cut(s) 422, 684
FatI CATG 5 cut(s) 4, 161, 260, 501, 569
FauI CCCGC 1 cut(s) 476
Fnu4HI GCNGC 6 cut(s) 172, 384, 427, 430, 499, 541
FokI GGATG 2 cut(s) 3, 232
FriOI GRGCYC 2 cut(s) 422, 531
Fsp4HI GCNGC 6 cut(s) 172, 384, 427, 430, 499, 541
FspBI CTAG 2 cut(s) 135, 423
FspI TGCGCA 1 cut(s) 244
GlaI GCGC 5 cut(s) 13, 49, 244, 433, 508
GluI GCNGC 6 cut(s) 172, 384, 427, 430, 499, 541
GsaI CCCAGC 1 cut(s) 317
GsuI CTGGAG 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 435
HaeIII GGCC 3 cut(s) 64, 171, 183
HapII CCGG 3 cut(s) 20, 249, 666
HhaI GCGC 5 cut(s) 14, 50, 245, 434, 509
Hin1II CATG 5 cut(s) 8, 165, 264, 505, 573
Hin6I GCGC 5 cut(s) 12, 48, 243, 432, 507
HinP1I GCGC 5 cut(s) 12, 48, 243, 432, 507
HincII GTYRAC 2 cut(s) 355, 605
HindII GTYRAC 2 cut(s) 355, 605
HinfI GANTC 1 cut(s) 157
HpaII CCGG 3 cut(s) 20, 249, 666
Hpy166II GTNNAC 4 cut(s) 219, 355, 513, 605
Hpy188I TCNGA 4 cut(s) 82, 156, 417, 456
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 4 cut(s) 219, 355, 513, 605
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 2 cut(s) 293, 438
HpyCH4V TGCA 7 cut(s) 4, 8, 264, 429, 501, 513, 543
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 131, 180, 426, 495, 504
HpyF3I CTNAG 2 cut(s) 96, 615
HpySE526I ACGT 2 cut(s) 293, 438
Hsp92II CATG 5 cut(s) 8, 165, 264, 505, 573
HspAI GCGC 5 cut(s) 12, 48, 243, 432, 507
LmnI GCTCC 4 cut(s) 406, 417, 486, 668
Lsp1109I GCAGC 5 cut(s) 395, 413, 441, 485, 527
LweI GCATC 2 cut(s) 113, 254
MaeI CTAG 2 cut(s) 135, 423
MaeII ACGT 2 cut(s) 293, 438
MaeIII GTNAC 3 cut(s) 224, 395, 469
MfeI CAATTG 1 cut(s) 190
MhlI GDGCHC 3 cut(s) 422, 515, 531
MlsI TGGCCA 1 cut(s) 64
MluCI AATT 5 cut(s) 27, 139, 190, 205, 303
MluNI TGGCCA 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 4 cut(s) 105, 269, 585, 610
Mox20I TGGCCA 1 cut(s) 64
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 64
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 64
MspI CCGG 3 cut(s) 20, 249, 666
MspR9I CCNGG 3 cut(s) 234, 405, 667
MunI CAATTG 1 cut(s) 190
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 2 cut(s) 234, 405
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 6 cut(s) 20, 131, 180, 426, 495, 504
NciI CCSGG 1 cut(s) 667
NcoI CCATGG 1 cut(s) 161
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 5 cut(s) 8, 165, 264, 505, 573
NlaIV GGNNCC 2 cut(s) 182, 672
NmuCI GTSAC 2 cut(s) 224, 395
NsbI TGCGCA 1 cut(s) 244
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 573
OliI CACNNNNGTG 1 cut(s) 296
PaeI GCATGC 1 cut(s) 8
PaqCI CACCTGC 1 cut(s) 308
PciI ACATGT 1 cut(s) 569
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 157
PflMI CCANNNNNTGG 2 cut(s) 167, 320
PkrI GCNGC 6 cut(s) 173, 385, 428, 431, 500, 542
PpuMI RGGWCCY 1 cut(s) 671
PscI ACATGT 1 cut(s) 569
PshBI ATTAAT 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 671
Psp6I CCWGG 2 cut(s) 232, 403
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 2 cut(s) 232, 403
PspN4I GGNNCC 2 cut(s) 182, 672
PspPI GGNCC 2 cut(s) 181, 671
PspPPI RGGWCCY 1 cut(s) 671
PstI CTGCAG 1 cut(s) 431
RsaI GTAC 2 cut(s) 187, 536
RsaNI GTAC 2 cut(s) 186, 535
RseI CAYNNNNRTG 1 cut(s) 296
SacI GAGCTC 1 cut(s) 422
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 6 cut(s) 172, 384, 427, 430, 499, 541
Sau96I GGNCC 2 cut(s) 181, 671
ScaI AGTACT 1 cut(s) 536
ScrFI CCNGG 3 cut(s) 234, 405, 667
SduI GDGCHC 3 cut(s) 422, 515, 531
SfaNI GCATC 2 cut(s) 113, 254
SfcI CTRYAG 2 cut(s) 427, 579
SinI GGWCC 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
SphI GCATGC 1 cut(s) 8
Sse9I AATT 5 cut(s) 27, 139, 190, 205, 303
SsiI CCGC 3 cut(s) 172, 393, 483
SspMI CTAG 2 cut(s) 135, 423
SstI GAGCTC 1 cut(s) 422
StyD4I CCNGG 3 cut(s) 232, 403, 665
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 2 cut(s) 296, 441
TaqI TCGA 2 cut(s) 107, 117
TasI AATT 5 cut(s) 27, 139, 190, 205, 303
TatI WGTACW 1 cut(s) 534
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseFI GTSAC 2 cut(s) 224, 395
TseI GCWGC 5 cut(s) 383, 426, 429, 498, 540
Tsp45I GTSAC 2 cut(s) 224, 395
TspDTI ATGAA 2 cut(s) 570, 608
TspGWI ACGGA 3 cut(s) 215, 282, 367
Van91I CCANNNNNTGG 2 cut(s) 167, 320
VneI GTGCAC 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 671
VspI ATTAAT 1 cut(s) 306
XceI RCATGY 2 cut(s) 8, 573
XspI CTAG 2 cut(s) 135, 423
ZrmI AGTACT 1 cut(s) 536
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.