Rw4G004330

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000594
Physical Location & Seq
Reverse (-)
8620918 .. 8621804
887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G004330.1

Sequence Viewer

Length: 699 bp
ATGAAATCTCAAGTTTCATTGCTCTCTCTTTTGGTGGTCTCTATTGTTTCCTCAGGGGCTCAGTCGGCTACATTCACTTTCACGAACAAATGCCCTTTCACAGTTTGGCCCGGAACCCTAACCGGCGGTGGCGGTGCACAACTATCCTCAACCGGGTTCGAGTTAGCATCCGGTGCCTCCTCAACTCTAGATGTCCCTGCCCCATGGTCCGGCCGCTTCTGGGGCCGGACTCAGTGCTCCACAGACTCATTGGGAAAGTTCACCTGCGCCACCGCAGACTGCGGCTCAGGTCAAGTCGCATGCAACGGCGCTGGTGCAATTCCACCGGTCGCTGACTTCTATGATATTAGTCTGGTTGATGGCTTCAACGTGCCTGTTCAACTAGTTCCACAAGGTGGCTCCGGTGGGTGCAGTGCCACGAGCTGCGCCGCCAATGTCAATTCAGTTTGTCCCGCAGAGTTGGCTGTGAAGGGATCAGATGGCAGTGTGATTGCTTGTAAAAGTGCGTGTTTGGTTTTTAATCAGCCTCAGTACTGTTGCACCGGCGACCATGGTACTCCGCAAACCTGCCCTCCGACTGATTATTCGAAGATCTTCAAGAACCAGTGCCCCCAGGCTTATAGTTATGCTTATGATGATAAGTCTAGCATTTTCACATGTAACGGTGGAGCTAATTATGTGATTACTTTTTGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

232

Amino Acids

23.74

Weight (kDa)

4.86

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 232 6.4e-72 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 2 cut(s) 272, 575
AccB1I GGYRCC 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 395
AciI CCGC 8 cut(s) 126, 132, 214, 273, 282, 429, 453, 560
AclWI GGATC 1 cut(s) 481
AcoI YGGCCR 1 cut(s) 211
AdeI CACNNNGTG 1 cut(s) 395
AfaI GTAC 2 cut(s) 533, 556
AfiI CCNNNNNNNGG 4 cut(s) 153, 209, 220, 395
AflIII ACRYGT 1 cut(s) 656
AgeI ACCGGT 1 cut(s) 325
AgsI TTSAA 3 cut(s) 367, 380, 598
AhlI ACTAGT 1 cut(s) 382
AjnI CCWGG 1 cut(s) 612
AluBI AGCT 2 cut(s) 423, 671
AluI AGCT 2 cut(s) 423, 671
Alw21I GWGCWC 2 cut(s) 139, 239
Alw26I GTCTC 1 cut(s) 43
Alw44I GTGCAC 1 cut(s) 135
AlwI GGATC 1 cut(s) 481
AoxI GGCC 3 cut(s) 107, 211, 223
ApaLI GTGCAC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 423
ArsI GACNNNNNNTTYG 2 cut(s) 568, 600
AsiGI ACCGGT 1 cut(s) 325
Asp700I GAANNNNTTC 1 cut(s) 593
AspLEI GCGC 3 cut(s) 269, 311, 428
AspS9I GGNCC 3 cut(s) 108, 207, 223
AsuC2I CCSGG 2 cut(s) 111, 154
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 587
AvaII GGWCC 1 cut(s) 207
AxyI CCTNAGG 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 139, 611
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 61
BauI CACGAG 1 cut(s) 418
Bbv12I GWGCWC 2 cut(s) 139, 239
BbvI GCAGC 1 cut(s) 410
BccI CCATC 2 cut(s) 353, 473
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 614
BcnI CCSGG 2 cut(s) 111, 154
BcoDI GTCTC 1 cut(s) 43
BcuI ACTAGT 1 cut(s) 382
BfaI CTAG 3 cut(s) 188, 383, 645
BfoI RGCGCY 1 cut(s) 312
BfuAI ACCTGC 2 cut(s) 272, 575
BglII AGATCT 1 cut(s) 591
BisI GCNGC 4 cut(s) 214, 283, 424, 429
BlsI GCNGC 4 cut(s) 215, 284, 425, 430
BmcAI AGTACT 1 cut(s) 533
Bme1390I CCNGG 3 cut(s) 111, 154, 614
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 3 cut(s) 108, 207, 223
BmiI GGNNCC 4 cut(s) 115, 175, 224, 400
BmrFI CCNGG 3 cut(s) 111, 154, 614
BmsI GCATC 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 286
Bpu14I TTCGAA 1 cut(s) 587
BpuMI CCSGG 2 cut(s) 111, 154
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 3 cut(s) 203, 550, 612
BsaWI WCCGGW 3 cut(s) 170, 325, 401
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 209, 220, 395
Bse118I RCCGGY 3 cut(s) 122, 325, 542
Bse1I ACTGG 1 cut(s) 604
Bse21I CCTNAGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 3 cut(s) 203, 550, 612
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 4 cut(s) 153, 209, 220, 395
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 5 cut(s) 66, 74, 245, 300, 542
BseNI ACTGG 1 cut(s) 604
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 2 cut(s) 139, 611
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 410
BsgI GTGCAG 1 cut(s) 430
Bsh1285I CGRYCG 2 cut(s) 214, 330
BshFI GGCC 3 cut(s) 109, 213, 225
BshNI GGYRCC 1 cut(s) 173
BshTI ACCGGT 1 cut(s) 325
BsiEI CGRYCG 2 cut(s) 214, 330
BsiHKAI GWGCWC 2 cut(s) 139, 239
BsiSI CCGG 9 cut(s) 111, 123, 153, 171, 210, 226, 326, 402, 543
BslFI GGGAC 2 cut(s) 179, 435
BslI CCNNNNNNNGG 4 cut(s) 153, 209, 220, 395
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 2 cut(s) 179, 435
BsnI GGCC 3 cut(s) 109, 213, 225
Bso31I GGTCTC 1 cut(s) 43
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 4 cut(s) 61, 139, 239, 611
Bsp143I GATC 2 cut(s) 473, 591
Bsp19I CCATGG 2 cut(s) 203, 550
BspACI CCGC 8 cut(s) 126, 132, 214, 273, 282, 429, 453, 560
BspANI GGCC 3 cut(s) 109, 213, 225
BspCNI CTCAG 5 cut(s) 65, 73, 244, 299, 541
BspLI GGNNCC 4 cut(s) 115, 175, 224, 400
BspMI ACCTGC 2 cut(s) 272, 575
BspPI GGATC 1 cut(s) 481
BspT104I TTCGAA 1 cut(s) 587
BspT107I GGYRCC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 17
BsrFI RCCGGY 3 cut(s) 122, 325, 542
BsrI ACTGG 1 cut(s) 604
BssAI RCCGGY 3 cut(s) 122, 325, 542
BssECI CCNNGG 3 cut(s) 203, 550, 612
BssMI GATC 2 cut(s) 473, 591
BssSI CACGAG 1 cut(s) 418
BssT1I CCWWGG 2 cut(s) 203, 550
Bst2BI CACGAG 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 3 cut(s) 103, 536, 665
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 5 cut(s) 52, 60, 231, 286, 528
BstDSI CCRYGG 2 cut(s) 203, 550
BstF5I GGATG 1 cut(s) 167
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 3 cut(s) 269, 311, 428
BstKTI GATC 2 cut(s) 476, 594
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 2 cut(s) 473, 591
BstMCI CGRYCG 2 cut(s) 214, 330
BstMWI GCNNNNNNNGC 4 cut(s) 65, 173, 222, 461
BstNI CCWGG 1 cut(s) 614
BstNSI RCATGY 2 cut(s) 303, 660
BstSCI CCNGG 3 cut(s) 109, 152, 612
BstSLI GKGCMC 2 cut(s) 139, 611
BstV1I GCAGC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 591
BstYI RGATCY 1 cut(s) 591
BstZI CGGCCG 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 3 cut(s) 109, 213, 225
BtgI CCRYGG 2 cut(s) 203, 550
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 2 cut(s) 418, 490
BtsIMutI CAGTG 4 cut(s) 239, 418, 490, 611
BveI ACCTGC 2 cut(s) 272, 575
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 3 cut(s) 269, 311, 428
Cfr10I RCCGGY 3 cut(s) 122, 325, 542
Cfr13I GGNCC 3 cut(s) 108, 207, 223
Csp6I GTAC 2 cut(s) 532, 555
CspAI ACCGGT 1 cut(s) 325
CviAII CATG 4 cut(s) 204, 300, 551, 657
CviQI GTAC 2 cut(s) 532, 555
DdeI CTNAG 5 cut(s) 52, 60, 231, 286, 528
DpnI GATC 2 cut(s) 475, 593
DpnII GATC 2 cut(s) 473, 591
DraIII CACNNNGTG 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 211
EagI CGGCCG 1 cut(s) 211
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 203, 550
Eco24I GRGCYC 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 612
EcoT14I CCWWGG 2 cut(s) 203, 550
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 2 cut(s) 203, 550
FaeI CATG 4 cut(s) 207, 303, 554, 660
FaiI YATR 9 cut(s) 205, 301, 342, 552, 621, 627, 633, 658, 678
FaqI GGGAC 2 cut(s) 179, 435
FatI CATG 4 cut(s) 203, 299, 550, 656
FauI CCCGC 1 cut(s) 460
Fnu4HI GCNGC 4 cut(s) 214, 283, 424, 429
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 4 cut(s) 214, 283, 424, 429
FspBI CTAG 3 cut(s) 188, 383, 645
GlaI GCGC 3 cut(s) 268, 310, 427
GluI GCNGC 4 cut(s) 214, 283, 424, 429
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 3 cut(s) 109, 213, 225
HapII CCGG 9 cut(s) 111, 123, 153, 171, 210, 226, 326, 402, 543
HhaI GCGC 3 cut(s) 269, 311, 428
Hin1II CATG 4 cut(s) 207, 303, 554, 660
Hin6I GCGC 3 cut(s) 267, 309, 426
HinP1I GCGC 3 cut(s) 267, 309, 426
HinfI GANTC 2 cut(s) 229, 245
HpaII CCGG 9 cut(s) 111, 123, 153, 171, 210, 226, 326, 402, 543
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 137, 261
Hpy188I TCNGA 2 cut(s) 478, 576
Hpy188III TCNNGA 3 cut(s) 82, 188, 598
Hpy8I GTNNAC 2 cut(s) 137, 261
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 3 cut(s) 103, 536, 665
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 5 cut(s) 137, 303, 317, 411, 540
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 173, 222, 461
HpyF3I CTNAG 5 cut(s) 52, 60, 231, 286, 528
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 4 cut(s) 207, 303, 554, 660
HspAI GCGC 3 cut(s) 267, 309, 426
Kzo9I GATC 2 cut(s) 473, 591
LmnI GCTCC 3 cut(s) 242, 404, 668
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 1 cut(s) 176
MaeI CTAG 3 cut(s) 188, 383, 645
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 659
MalI GATC 2 cut(s) 475, 593
MboI GATC 2 cut(s) 473, 591
MboII GAAGA 2 cut(s) 586, 601
MflI RGATCY 1 cut(s) 591
MhlI GDGCHC 4 cut(s) 61, 139, 239, 611
MluCI AATT 3 cut(s) 318, 439, 673
MlyI GAGTC 2 cut(s) 223, 239
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 6 cut(s) 61, 157, 187, 190, 537, 582
MroXI GAANNNNTTC 1 cut(s) 593
MseI TTAA 1 cut(s) 519
MspI CCGG 9 cut(s) 111, 123, 153, 171, 210, 226, 326, 402, 543
MspR9I CCNGG 3 cut(s) 111, 154, 614
MvaI CCWGG 1 cut(s) 614
MwoI GCNNNNNNNGC 4 cut(s) 65, 173, 222, 461
NciI CCSGG 2 cut(s) 111, 154
NcoI CCATGG 2 cut(s) 203, 550
NdeII GATC 2 cut(s) 473, 591
NlaIII CATG 4 cut(s) 207, 303, 554, 660
NlaIV GGNNCC 4 cut(s) 115, 175, 224, 400
NspI RCATGY 2 cut(s) 303, 660
NspV TTCGAA 1 cut(s) 587
PaeI GCATGC 1 cut(s) 303
PaqCI CACCTGC 1 cut(s) 272
PciI ACATGT 1 cut(s) 656
PdmI GAANNNNTTC 1 cut(s) 593
PflMI CCANNNNNTGG 1 cut(s) 395
PinAI ACCGGT 1 cut(s) 325
PkrI GCNGC 4 cut(s) 215, 284, 425, 430
PleI GAGTC 2 cut(s) 223, 239
PpsI GAGTC 2 cut(s) 223, 239
PscI ACATGT 1 cut(s) 656
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 4 cut(s) 115, 175, 224, 400
PspPI GGNCC 3 cut(s) 108, 207, 223
PsuI RGATCY 1 cut(s) 591
RsaI GTAC 2 cut(s) 533, 556
RsaNI GTAC 2 cut(s) 532, 555
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 4 cut(s) 214, 283, 424, 429
Sau3AI GATC 2 cut(s) 473, 591
Sau96I GGNCC 3 cut(s) 108, 207, 223
ScaI AGTACT 1 cut(s) 533
SchI GAGTC 2 cut(s) 223, 239
ScrFI CCNGG 3 cut(s) 111, 154, 614
SduI GDGCHC 4 cut(s) 61, 139, 239, 611
SetI ASST 7 cut(s) 266, 292, 372, 397, 425, 569, 673
SfaNI GCATC 1 cut(s) 176
SfuI TTCGAA 1 cut(s) 587
SgrAI CRCCGGYG 1 cut(s) 542
SinI GGWCC 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SpeI ACTAGT 1 cut(s) 382
SphI GCATGC 1 cut(s) 303
Sse9I AATT 3 cut(s) 318, 439, 673
SsiI CCGC 8 cut(s) 126, 132, 214, 273, 282, 429, 453, 560
SspMI CTAG 3 cut(s) 188, 383, 645
StyD4I CCNGG 3 cut(s) 109, 152, 612
StyI CCWWGG 2 cut(s) 203, 550
TaaI ACNGT 3 cut(s) 103, 536, 665
TaiI ACGT 1 cut(s) 372
TaqI TCGA 2 cut(s) 159, 587
TasI AATT 3 cut(s) 318, 439, 673
TatI WGTACW 1 cut(s) 531
TauI GCSGC 3 cut(s) 216, 285, 431
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 4 cut(s) 239, 418, 490, 611
TseI GCWGC 1 cut(s) 423
TspDTI ATGAA 2 cut(s) 6, 17
TspRI CASTG 4 cut(s) 239, 418, 490, 611
Van91I CCANNNNNTGG 1 cut(s) 395
VneI GTGCAC 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 187
XceI RCATGY 2 cut(s) 303, 660
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 593
XspI CTAG 3 cut(s) 188, 383, 645
ZrmI AGTACT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.