Prupe.1G045400_v2.0.a1

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000594
Physical Location & Seq
Reverse (-)
3240831 .. 3242563
1733 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G045400.1

Sequence Viewer

Length: 729 bp
ATGGCATCTCAAACTTTGCTCTCTCTTCTTTTGGTCACTGTCTTCCTATCAGGGGCTAATTCAGCTACATTCACATTCACAAACCGTTGCCCCTACACAGTTTGGCCAGGAGCCCTAACGGGGAGTGGTGCACAATTATCTTCAACCGGATTCGAGTTAGCATCCGGGGCCTCTTCATCTTTGGATGTCCCTTCCCCATGGTCCGGCCGCTTCTGGGGCCGGACCCAGTGCTCCACAGATGCCACAGGAAAGTTTATTTGTGGCACCGCAGACTGCGGCTCTGGTCAAGTCGCGTGCAATGGTGCTGGTGCAATCCCACCAGCATCGTTGATAGAATTAACTCTGGCCCCGGGTGGAGGGCAAGATTTCTACGATATTAGCCTCGTTGACGGCTTCAACGTGCCTCTCGAATTAGCCCCACAAGGAGGGTCTGGTGGATGTAGCGCCACAAGCTGCCCAGCTAATGTCAATAGTATTTGCCCGGCAGAGTTGGCTATAAAAGGGTCAGATGGCGGTGCGATTGCCTGCAAAAGTGCGTGTTTGGCTTTCAACCGGCCGGATTATTGTTGCACCGGCACATTCGGGAGCCCTGATACATGCCCTCCTACCGATTATTCAAAGATATTCAAGCGCCAGTGCCCTCAAGCTTATAGTTATGCTTTTGATGATAAAACTAGCACTTTCACATGTACTGGTGGACCTAACTATGCCATCACTTTTTGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

243

Amino Acids

24.72

Weight (kDa)

4.52

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AccII CGCG 1 cut(s) 293
AciI CCGC 4 cut(s) 208, 267, 276, 513
AcoI YGGCCR 3 cut(s) 104, 205, 554
AfaI GTAC 1 cut(s) 691
AfiI CCNNNNNNNGG 6 cut(s) 52, 120, 203, 214, 356, 425
AflIII ACRYGT 1 cut(s) 686
AgsI TTSAA 5 cut(s) 144, 397, 550, 618, 628
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 4 cut(s) 65, 453, 461, 647
AluI AGCT 4 cut(s) 65, 453, 461, 647
Alw21I GWGCWC 2 cut(s) 133, 233
Alw44I GTGCAC 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 349
AoxI GGCC 6 cut(s) 104, 168, 205, 217, 345, 554
ApaLI GTGCAC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 453
AspLEI GCGC 2 cut(s) 446, 633
AspS9I GGNCC 6 cut(s) 168, 201, 217, 222, 346, 698
AsuC2I CCSGG 4 cut(s) 166, 350, 351, 482
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 3 cut(s) 201, 222, 698
BaeGI GKGCMC 2 cut(s) 133, 641
BalI TGGCCA 1 cut(s) 106
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 2 cut(s) 115, 590
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 2 cut(s) 133, 233
BbvI GCAGC 1 cut(s) 440
BccI CCATC 2 cut(s) 503, 719
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 108
BcnI CCSGG 4 cut(s) 166, 350, 351, 482
BfaI CTAG 1 cut(s) 675
BfoI RGCGCY 2 cut(s) 447, 634
BisI GCNGC 3 cut(s) 208, 277, 454
BlsI GCNGC 3 cut(s) 209, 278, 455
Bme1390I CCNGG 5 cut(s) 108, 166, 350, 351, 482
Bme18I GGWCC 3 cut(s) 201, 222, 698
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 6 cut(s) 168, 201, 217, 222, 346, 698
BmiI GGNNCC 7 cut(s) 112, 169, 218, 224, 265, 348, 587
BmrFI CCNGG 5 cut(s) 108, 166, 350, 351, 482
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 4 cut(s) 14, 170, 229, 332
BmuI ACTGGG 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 627
BpuMI CCSGG 4 cut(s) 166, 350, 351, 482
BsaJI CCNNGG 4 cut(s) 165, 197, 348, 349
BsaWI WCCGGW 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 586, 616
Bsc4I CCNNNNNNNGG 6 cut(s) 52, 120, 203, 214, 356, 425
Bse118I RCCGGY 2 cut(s) 552, 572
Bse1I ACTGG 3 cut(s) 226, 634, 697
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 4 cut(s) 165, 197, 348, 349
BseGI GGATG 3 cut(s) 161, 190, 443
BseLI CCNNNNNNNGG 6 cut(s) 52, 120, 203, 214, 356, 425
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 3 cut(s) 226, 634, 697
BseSI GKGCMC 2 cut(s) 133, 641
BseX3I CGGCCG 2 cut(s) 205, 554
BseXI GCAGC 1 cut(s) 440
BseYI CCCAGC 1 cut(s) 457
Bsh1236I CGCG 1 cut(s) 293
Bsh1285I CGRYCG 2 cut(s) 208, 557
BshFI GGCC 6 cut(s) 106, 170, 207, 219, 347, 556
BshNI GGYRCC 1 cut(s) 263
BsiEI CGRYCG 2 cut(s) 208, 557
BsiHKAI GWGCWC 2 cut(s) 133, 233
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 9 cut(s) 147, 165, 204, 220, 350, 482, 553, 557, 573
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 6 cut(s) 52, 120, 203, 214, 356, 425
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 6 cut(s) 106, 170, 207, 219, 347, 556
BsoBI CYCGRG 1 cut(s) 349
Bsp1286I GDGCHC 5 cut(s) 115, 133, 233, 590, 641
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 4 cut(s) 208, 267, 276, 513
BspANI GGCC 6 cut(s) 106, 170, 207, 219, 347, 556
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 7 cut(s) 112, 169, 218, 224, 265, 348, 587
BspT107I GGYRCC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 2 cut(s) 552, 572
BsrI ACTGG 3 cut(s) 226, 634, 697
BssAI RCCGGY 2 cut(s) 552, 572
BssECI CCNNGG 4 cut(s) 165, 197, 348, 349
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 40, 86, 100
Bst6I CTCTTC 2 cut(s) 30, 178
BstC8I GCNNGC 2 cut(s) 295, 526
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 3 cut(s) 161, 190, 443
BstFNI CGCG 1 cut(s) 293
BstH2I RGCGCY 2 cut(s) 447, 634
BstHHI GCGC 2 cut(s) 446, 633
BstMCI CGRYCG 2 cut(s) 208, 557
BstMWI GCNNNNNNNGC 6 cut(s) 62, 167, 216, 450, 491, 542
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 2 cut(s) 600, 690
BstSCI CCNGG 5 cut(s) 106, 164, 348, 349, 480
BstSLI GKGCMC 2 cut(s) 133, 641
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 440
BstV2I GAAGAC 1 cut(s) 34
BstZI CGGCCG 2 cut(s) 205, 554
BsuRI GGCC 6 cut(s) 106, 170, 207, 219, 347, 556
BtgI CCRYGG 1 cut(s) 197
BtsCI GGATG 3 cut(s) 161, 190, 443
BtsIMutI CAGTG 3 cut(s) 36, 233, 641
Cac8I GCNNGC 2 cut(s) 295, 526
CfoI GCGC 2 cut(s) 446, 633
Cfr10I RCCGGY 2 cut(s) 552, 572
Cfr13I GGNCC 6 cut(s) 168, 201, 217, 222, 346, 698
Cfr9I CCCGGG 1 cut(s) 349
Csp6I GTAC 1 cut(s) 690
CviAII CATG 3 cut(s) 198, 597, 687
CviQI GTAC 1 cut(s) 690
EaeI YGGCCR 3 cut(s) 104, 205, 554
EagI CGGCCG 2 cut(s) 205, 554
Eam1104I CTCTTC 2 cut(s) 30, 178
EarI CTCTTC 2 cut(s) 30, 178
EclXI CGGCCG 2 cut(s) 205, 554
Eco130I CCWWGG 1 cut(s) 197
Eco24I GRGCYC 2 cut(s) 115, 590
Eco47I GGWCC 3 cut(s) 201, 222, 698
Eco52I CGGCCG 2 cut(s) 205, 554
Eco88I CYCGRG 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 197
EcoT38I GRGCYC 2 cut(s) 115, 590
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 3 cut(s) 201, 600, 690
FaiI YATR 7 cut(s) 199, 497, 598, 651, 657, 688, 708
FaqI GGGAC 1 cut(s) 173
FatI CATG 3 cut(s) 197, 596, 686
Fnu4HI GCNGC 3 cut(s) 208, 277, 454
FokI GGATG 3 cut(s) 148, 197, 450
FriOI GRGCYC 2 cut(s) 115, 590
Fsp4HI GCNGC 3 cut(s) 208, 277, 454
FspBI CTAG 1 cut(s) 675
GlaI GCGC 2 cut(s) 445, 632
GluI GCNGC 3 cut(s) 208, 277, 454
GsaI CCCAGC 1 cut(s) 461
HaeII RGCGCY 2 cut(s) 447, 634
HaeIII GGCC 6 cut(s) 106, 170, 207, 219, 347, 556
HapII CCGG 9 cut(s) 147, 165, 204, 220, 350, 482, 553, 557, 573
HhaI GCGC 2 cut(s) 446, 633
Hin1II CATG 3 cut(s) 201, 600, 690
Hin6I GCGC 2 cut(s) 444, 631
HinP1I GCGC 2 cut(s) 444, 631
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 1 cut(s) 150
HpaII CCGG 9 cut(s) 147, 165, 204, 220, 350, 482, 553, 557, 573
Hpy166II GTNNAC 3 cut(s) 131, 388, 698
Hpy188I TCNGA 1 cut(s) 508
Hpy188III TCNNGA 2 cut(s) 407, 583
Hpy8I GTNNAC 3 cut(s) 131, 388, 698
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 3 cut(s) 40, 86, 100
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 5 cut(s) 131, 297, 311, 528, 570
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 167, 216, 450, 491, 542
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 3 cut(s) 201, 600, 690
HspAI GCGC 2 cut(s) 444, 631
LmnI GCTCC 3 cut(s) 110, 236, 585
Lsp1109I GCAGC 1 cut(s) 440
LweI GCATC 4 cut(s) 14, 170, 229, 332
MaeI CTAG 1 cut(s) 675
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 34
MboII GAAGA 4 cut(s) 17, 34, 132, 165
MhlI GDGCHC 5 cut(s) 115, 133, 233, 590, 641
MlsI TGGCCA 1 cut(s) 106
MluCI AATT 4 cut(s) 58, 134, 335, 410
MluNI TGGCCA 1 cut(s) 106
MnlI CCTC 7 cut(s) 181, 350, 392, 414, 419, 612, 651
Mox20I TGGCCA 1 cut(s) 106
MscI TGGCCA 1 cut(s) 106
MseI TTAA 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 106
MspI CCGG 9 cut(s) 147, 165, 204, 220, 350, 482, 553, 557, 573
MspR9I CCNGG 5 cut(s) 108, 166, 350, 351, 482
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 6 cut(s) 62, 167, 216, 450, 491, 542
NciI CCSGG 4 cut(s) 166, 350, 351, 482
NcoI CCATGG 1 cut(s) 197
NlaIII CATG 3 cut(s) 201, 600, 690
NlaIV GGNNCC 7 cut(s) 112, 169, 218, 224, 265, 348, 587
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 2 cut(s) 600, 690
PciI ACATGT 1 cut(s) 686
PcsI WCGNNNNNNNCGW 2 cut(s) 396, 405
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 3 cut(s) 209, 278, 455
PscI ACATGT 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 457
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 7 cut(s) 112, 169, 218, 224, 265, 348, 587
PspPI GGNCC 6 cut(s) 168, 201, 217, 222, 346, 698
RsaI GTAC 1 cut(s) 691
RsaNI GTAC 1 cut(s) 690
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 3 cut(s) 208, 277, 454
Sau96I GGNCC 6 cut(s) 168, 201, 217, 222, 346, 698
ScrFI CCNGG 5 cut(s) 108, 166, 350, 351, 482
SduI GDGCHC 5 cut(s) 115, 133, 233, 590, 641
SetI ASST 6 cut(s) 67, 402, 455, 463, 649, 703
SfaNI GCATC 4 cut(s) 14, 170, 229, 332
SinI GGWCC 3 cut(s) 201, 222, 698
SmaI CCCGGG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
Sse9I AATT 4 cut(s) 58, 134, 335, 410
SsiI CCGC 4 cut(s) 208, 267, 276, 513
SspMI CTAG 1 cut(s) 675
StyD4I CCNGG 5 cut(s) 106, 164, 348, 349, 480
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 3 cut(s) 40, 86, 100
TaiI ACGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 153, 408
TasI AATT 4 cut(s) 58, 134, 335, 410
TatI WGTACW 1 cut(s) 689
TauI GCSGC 2 cut(s) 210, 279
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 3 cut(s) 43, 233, 641
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 165
TspMI CCCGGG 1 cut(s) 349
TspRI CASTG 3 cut(s) 43, 233, 641
VneI GTGCAC 1 cut(s) 129
VpaK11BI GGWCC 3 cut(s) 201, 222, 698
XceI RCATGY 2 cut(s) 600, 690
XmaI CCCGGG 1 cut(s) 349
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.