MD10G1201100.v1.1

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000594
Physical Location & Seq
Reverse (-)
29940516 .. 29941310
795 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1201100.v1.1.491

Sequence Viewer

Length: 705 bp
ATGATGATTAATTATTTGCATGCAGGGGTTTACTCGGCCAAGTTCACATTCACAAACAAATGTCCCAACACAGTTTGGCCAGGAACCCTAACCGGAGGCGGCGGCCCACAATCACTTTCCACTGGATTTGAGTTAGCCTCCGGTGCTTCAACATCACTGACTGTCCAAGCTCCGTGGTCCGGCCGCTTCTGGGGCCGCTCTCACTGCTCGACAGACTCCTCCGGAAAGTTCAAATGCTCAACAGGAGATTGTGGCTCTGGCCAAATACCCTGCAATGGTGCCGGTGCAAGTCCACCAGCATCCCTAGTGGAGTTAACCCTAGCAACCAACGGAGGACAAGATTTCTACGATGTTAGCCTTGTTGACGGCTTCAACTTGCCCATTAAGTTAGCCCCCAGAGGCGGCTCCGGTGACTGCAAATCCACAAGCTGCGCGGCCAATATAAACACTGTTTGTCCTGCCGAGTTGTCCGACAAAGTATCGGATGGGAGTGTGATTGGCTGCAAAAGTGCATGTTTGGCTTTAAATCAGCCCCAATATTGTTGCACTGGCGCTTATGGAACCCCTGATACATGCCCTCCTACTGACTTTTCAAAGGTCTTCAAGAAGCAGTGTCCCCAGGCTTATAGTTATGCTTATGATGACAAATCTAGTACTTTCACATGCTTTGGTGGCCCTAACTATGAAATTACCTTCTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

235

Amino Acids

24.32

Weight (kDa)

6.06

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 19 - 234 7.5e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 198
AccII CGCG 1 cut(s) 434
AccIII TCCGGA 1 cut(s) 221
AciI CCGC 6 cut(s) 99, 102, 184, 196, 402, 434
AcoI YGGCCR 5 cut(s) 36, 77, 181, 259, 435
AfaI GTAC 1 cut(s) 655
AfiI CCNNNNNNNGG 4 cut(s) 179, 190, 275, 401
AgsI TTSAA 5 cut(s) 150, 232, 373, 594, 604
AjnI CCWGG 2 cut(s) 79, 618
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 2 cut(s) 170, 429
AluI AGCT 2 cut(s) 170, 429
Aor13HI TCCGGA 1 cut(s) 221
AoxI GGCC 8 cut(s) 36, 77, 103, 181, 193, 259, 435, 673
ApeKI GCWGC 2 cut(s) 429, 501
AseI ATTAAT 1 cut(s) 9
AspLEI GCGC 2 cut(s) 434, 554
AspS9I GGNCC 4 cut(s) 104, 177, 193, 674
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 177
BalI TGGCCA 2 cut(s) 79, 261
BanI GGYRCC 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 592
BbvI GCAGC 2 cut(s) 416, 488
BccI CCATC 1 cut(s) 479
BceAI ACGGC 1 cut(s) 382
BciT130I CCWGG 2 cut(s) 81, 620
BfaI CTAG 3 cut(s) 305, 320, 651
BfoI RGCGCY 1 cut(s) 555
BisI GCNGC 8 cut(s) 100, 103, 184, 196, 403, 430, 435, 502
BlsI GCNGC 8 cut(s) 101, 104, 185, 197, 404, 431, 436, 503
BmcAI AGTACT 1 cut(s) 655
Bme1390I CCNGG 2 cut(s) 81, 620
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 4 cut(s) 104, 177, 193, 674
BmiI GGNNCC 5 cut(s) 85, 194, 280, 406, 562
BmrFI CCNGG 2 cut(s) 81, 620
BmsI GCATC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 592
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BsaJI CCNNGG 2 cut(s) 173, 618
BsaWI WCCGGW 4 cut(s) 92, 140, 221, 407
BsaXI ACNNNNNCTCC 2 cut(s) 562, 592
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 190, 275, 401
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 127, 553
Bse3DI GCAATG 1 cut(s) 280
BseAI TCCGGA 1 cut(s) 221
BseBI CCWGG 2 cut(s) 81, 620
BseDI CCNNGG 2 cut(s) 173, 618
BseGI GGATG 2 cut(s) 299, 490
BseLI CCNNNNNNNGG 4 cut(s) 179, 190, 275, 401
BseMI GCAATG 1 cut(s) 280
BseNI ACTGG 2 cut(s) 127, 553
BseRI GAGGAG 1 cut(s) 208
BseX3I CGGCCG 1 cut(s) 181
BseXI GCAGC 2 cut(s) 416, 488
Bsh1236I CGCG 1 cut(s) 434
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 8 cut(s) 38, 79, 105, 183, 195, 261, 437, 675
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 184
BsiSI CCGG 6 cut(s) 93, 141, 180, 222, 282, 408
BslFI GGGAC 2 cut(s) 48, 600
BslI CCNNNNNNNGG 4 cut(s) 179, 190, 275, 401
BsmFI GGGAC 2 cut(s) 48, 600
BsnI GGCC 8 cut(s) 38, 79, 105, 183, 195, 261, 437, 675
Bsp13I TCCGGA 1 cut(s) 221
BspACI CCGC 6 cut(s) 99, 102, 184, 196, 402, 434
BspANI GGCC 8 cut(s) 38, 79, 105, 183, 195, 261, 437, 675
BspEI TCCGGA 1 cut(s) 221
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 5 cut(s) 85, 194, 280, 406, 562
BspT107I GGYRCC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 2 cut(s) 127, 553
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 173, 618
Bst2UI CCWGG 2 cut(s) 81, 620
Bst4CI ACNGT 3 cut(s) 73, 163, 451
BstC8I GCNNGC 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 299, 490
BstFNI CGCG 1 cut(s) 434
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 2 cut(s) 434, 554
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 5 cut(s) 143, 192, 204, 518, 672
BstNI CCWGG 2 cut(s) 81, 620
BstNSI RCATGY 4 cut(s) 23, 516, 576, 666
BstSCI CCNGG 2 cut(s) 79, 618
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 2 cut(s) 416, 488
BstV2I GAAGAC 1 cut(s) 592
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 8 cut(s) 38, 79, 105, 183, 195, 261, 437, 675
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 2 cut(s) 299, 490
BtsI GCAGTG 2 cut(s) 202, 617
BtsIMutI CAGTG 6 cut(s) 120, 155, 202, 447, 546, 617
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 2 cut(s) 434, 554
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 4 cut(s) 104, 177, 193, 674
Csp6I GTAC 1 cut(s) 654
CspCI CAANNNNNGTGG 4 cut(s) 109, 144, 155, 190
CviAII CATG 4 cut(s) 20, 513, 573, 663
CviQI GTAC 1 cut(s) 654
DraI TTTAAA 1 cut(s) 525
EaeI YGGCCR 5 cut(s) 36, 77, 181, 259, 435
EagI CGGCCG 1 cut(s) 181
EclXI CGGCCG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 177
Eco52I CGGCCG 1 cut(s) 181
EcoRII CCWGG 2 cut(s) 79, 618
FaeI CATG 4 cut(s) 23, 516, 576, 666
FaqI GGGAC 2 cut(s) 48, 600
FatI CATG 4 cut(s) 19, 512, 572, 662
Fnu4HI GCNGC 8 cut(s) 100, 103, 184, 196, 403, 430, 435, 502
FokI GGATG 2 cut(s) 286, 497
Fsp4HI GCNGC 8 cut(s) 100, 103, 184, 196, 403, 430, 435, 502
FspBI CTAG 3 cut(s) 305, 320, 651
GlaI GCGC 2 cut(s) 433, 553
GluI GCNGC 8 cut(s) 100, 103, 184, 196, 403, 430, 435, 502
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 8 cut(s) 38, 79, 105, 183, 195, 261, 437, 675
HapII CCGG 6 cut(s) 93, 141, 180, 222, 282, 408
HhaI GCGC 2 cut(s) 434, 554
Hin1II CATG 4 cut(s) 23, 516, 576, 666
Hin6I GCGC 2 cut(s) 432, 552
HinP1I GCGC 2 cut(s) 432, 552
HincII GTYRAC 2 cut(s) 315, 364
HindII GTYRAC 2 cut(s) 315, 364
HinfI GANTC 1 cut(s) 215
HpaI GTTAAC 1 cut(s) 315
HpaII CCGG 6 cut(s) 93, 141, 180, 222, 282, 408
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 5 cut(s) 31, 45, 293, 315, 364
Hpy188I TCNGA 2 cut(s) 472, 484
Hpy188III TCNNGA 2 cut(s) 222, 604
Hpy8I GTNNAC 5 cut(s) 31, 45, 293, 315, 364
HpyAV CCTTC 1 cut(s) 703
HpyCH4III ACNGT 3 cut(s) 73, 163, 451
HpyCH4V TGCA 8 cut(s) 19, 23, 273, 287, 417, 504, 512, 546
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 192, 204, 518, 672
Hsp92II CATG 4 cut(s) 23, 516, 576, 666
HspAI GCGC 2 cut(s) 432, 552
Kpn2I TCCGGA 1 cut(s) 221
KspAI GTTAAC 1 cut(s) 315
LmnI GCTCC 2 cut(s) 175, 410
Lsp1109I GCAGC 2 cut(s) 416, 488
LweI GCATC 1 cut(s) 308
MaeI CTAG 3 cut(s) 305, 320, 651
MaeIII GTNAC 1 cut(s) 410
MbiI CCGCTC 1 cut(s) 198
MboII GAAGA 1 cut(s) 592
MlsI TGGCCA 2 cut(s) 79, 261
MluCI AATT 2 cut(s) 10, 687
MluNI TGGCCA 2 cut(s) 79, 261
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 6 cut(s) 89, 148, 229, 326, 392, 588
Mox20I TGGCCA 2 cut(s) 79, 261
MroI TCCGGA 1 cut(s) 221
MscI TGGCCA 2 cut(s) 79, 261
MseI TTAA 4 cut(s) 9, 314, 384, 524
Msp20I TGGCCA 2 cut(s) 79, 261
MspI CCGG 6 cut(s) 93, 141, 180, 222, 282, 408
MspR9I CCNGG 2 cut(s) 81, 620
MvaI CCWGG 2 cut(s) 81, 620
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 5 cut(s) 143, 192, 204, 518, 672
NlaIII CATG 4 cut(s) 23, 516, 576, 666
NlaIV GGNNCC 5 cut(s) 85, 194, 280, 406, 562
NmeAIII GCCGAG 2 cut(s) 14, 487
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 4 cut(s) 23, 516, 576, 666
PaeI GCATGC 1 cut(s) 23
PkrI GCNGC 8 cut(s) 101, 104, 185, 197, 404, 431, 436, 503
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PshBI ATTAAT 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 79, 618
PspGI CCWGG 2 cut(s) 79, 618
PspN4I GGNNCC 5 cut(s) 85, 194, 280, 406, 562
PspPI GGNCC 4 cut(s) 104, 177, 193, 674
PsrI GAACNNNNNNTAC 2 cut(s) 553, 585
RsaI GTAC 1 cut(s) 655
RsaNI GTAC 1 cut(s) 654
SaqAI TTAA 4 cut(s) 9, 314, 384, 524
SatI GCNGC 8 cut(s) 100, 103, 184, 196, 403, 430, 435, 502
Sau96I GGNCC 4 cut(s) 104, 177, 193, 674
ScaI AGTACT 1 cut(s) 655
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 81, 620
SetI ASST 4 cut(s) 172, 431, 600, 695
SfaNI GCATC 1 cut(s) 308
SinI GGWCC 1 cut(s) 177
SphI GCATGC 1 cut(s) 23
Sse9I AATT 2 cut(s) 10, 687
SsiI CCGC 6 cut(s) 99, 102, 184, 196, 402, 434
SspI AATATT 1 cut(s) 539
SspMI CTAG 3 cut(s) 305, 320, 651
StyD4I CCNGG 2 cut(s) 79, 618
TaaI ACNGT 3 cut(s) 73, 163, 451
TaqI TCGA 1 cut(s) 209
TasI AATT 2 cut(s) 10, 687
TatI WGTACW 1 cut(s) 653
TauI GCSGC 6 cut(s) 102, 105, 186, 198, 405, 437
Tru1I TTAA 4 cut(s) 9, 314, 384, 524
Tru9I TTAA 4 cut(s) 9, 314, 384, 524
TscAI CASTG 6 cut(s) 127, 162, 209, 454, 553, 617
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 2 cut(s) 429, 501
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 1 cut(s) 699
TspGWI ACGGA 2 cut(s) 162, 345
TspRI CASTG 6 cut(s) 127, 162, 209, 454, 553, 617
VpaK11BI GGWCC 1 cut(s) 177
VspI ATTAAT 1 cut(s) 9
XceI RCATGY 4 cut(s) 23, 516, 576, 666
XspI CTAG 3 cut(s) 305, 320, 651
ZrmI AGTACT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.