Rorug01G0264600

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000594
Physical Location & Seq
Reverse (-)
37584356 .. 37587902
3547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0264600.1

Sequence Viewer

Length: 903 bp
ATGCATGTGTGTTCTCGGCTGTGGTCTGCACATCCGGAGGTCACTTGCTCTGTTCTTAGTCATTCAACAGAGTCTTCAGATCGCAGCCAGCTGAAAGTTGATGGATCTACTGTTGGATTGTCTCCTTGGAAAGGGCATTCTGCTCTCCTTAGACAAGCAGAGTTAAATACATCGGTGGATCTGCATGTGAATGAGGCAATGACAGAACCGAATTTGAAGCAGAATCTCAGCCAAAAGAGGCTGAGGAAAGTGATTGAGCAGTCGGGAGTAGTTGAGATTCCTGGACTATGTTACAGAAACATACCTGCTGTTGTTACAACTCCAATTGGCCAAATGAGGAGGACGGAGCTGCCAGGAATCGGAGTCGGGGCTGTAGATCTCGACGACCAAGCGGTCCTCGATGTCGACCAAGTTGCCGATGAATCTGACACCGCCGCCGACGATGAAGTTGGGGAGGAGAGAGCCGGAGTCGAAAACGCCGAGAAGAGGGTTGATGCGGGAGAAGTGGAGAGGCGAGGTGGAGCGCCAAGAGCGCTTGAGGATTCTGGAGTAGGTGAAGTTGGGGGCGGTGATGAGGAAGAAGCCGTCGGCGCTGAGGAAGCAGGAGTGGGAGTAGTGGTGGGGAGGGAAGGTGGGGGTGGGGAGGCGGAGCCAGCGGTTGGAGAGAGGGTCGAAGGCGAAGGACTGGTTGTTCTTGGAGGAGGTGTTGTGGATGCCGTAGAGGAAGAACCAGGGGTGGGATTGGGTTTGCGTGGCGGAAAAGGTGGTGGAGGAGATGATGGATTGCCAGAGCTTGCAGACGGTGGAGGCTCGGACAAGGGTCGGGATGGGGAGGTAGGAGAGGATCAGCTCCGTCACGTCGGAGCTCAGGTTGGTGATTTCCGTCATGGGTTTGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

300

Amino Acids

31.02

Weight (kDa)

4.46

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 313
AccB7I CCANNNNNTGG 1 cut(s) 659
AccI GTMKAC 1 cut(s) 405
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 8 cut(s) 392, 432, 435, 497, 567, 647, 656, 756
AclWI GGATC 3 cut(s) 112, 186, 852
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 60
AfeI AGCGCT 1 cut(s) 534
AfiI CCNNNNNNNGG 5 cut(s) 131, 359, 486, 659, 737
AgsI TTSAA 2 cut(s) 66, 217
AjiI CACGTC 1 cut(s) 859
AjnI CCWGG 3 cut(s) 280, 352, 730
AloI GAACNNNNNNTCC 2 cut(s) 675, 707
AluBI AGCT 5 cut(s) 91, 349, 793, 850, 866
AluI AGCT 5 cut(s) 91, 349, 793, 850, 866
Alw21I GWGCWC 1 cut(s) 868
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 3 cut(s) 112, 186, 852
Aor13HI TCCGGA 1 cut(s) 34
Aor51HI AGCGCT 1 cut(s) 534
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 84, 349
ApoI RAATTY 1 cut(s) 211
AspLEI GCGC 3 cut(s) 526, 535, 593
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 3 cut(s) 566, 581, 887
AvaII GGWCC 1 cut(s) 394
BalI TGGCCA 1 cut(s) 330
BanII GRGCYC 1 cut(s) 868
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 868
BbvCI CCTCAGC 2 cut(s) 242, 594
BbvI GCAGC 2 cut(s) 96, 336
BccI CCATC 3 cut(s) 95, 773, 821
BceAI ACGGC 2 cut(s) 569, 701
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 3 cut(s) 282, 354, 732
BcoDI GTCTC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 372
BfoI RGCGCY 3 cut(s) 527, 536, 594
BfuAI ACCTGC 1 cut(s) 313
BglII AGATCT 1 cut(s) 376
BisI GCNGC 3 cut(s) 85, 350, 435
BlsI GCNGC 3 cut(s) 86, 351, 436
Bme1390I CCNGG 3 cut(s) 282, 354, 732
Bme18I GGWCC 1 cut(s) 394
BmgBI CACGTC 1 cut(s) 859
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 3 cut(s) 282, 354, 732
BmsI GCATC 2 cut(s) 484, 703
BoxI GACNNNNGTC 1 cut(s) 819
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 567
Bpu10I CCTNAGC 3 cut(s) 242, 594, 867
BpuEI CTTGAG 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 125, 731
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 5 cut(s) 131, 359, 486, 659, 737
Bse1I ACTGG 1 cut(s) 690
Bse3DI GCAATG 1 cut(s) 204
BseAI TCCGGA 1 cut(s) 34
BseBI CCWGG 3 cut(s) 282, 354, 732
BseDI CCNNGG 2 cut(s) 125, 731
BseGI GGATG 3 cut(s) 31, 718, 832
BseLI CCNNNNNNNGG 5 cut(s) 131, 359, 486, 659, 737
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 4 cut(s) 233, 241, 585, 881
BseNI ACTGG 1 cut(s) 690
BseRI GAGGAG 4 cut(s) 352, 470, 714, 786
BseXI GCAGC 2 cut(s) 96, 336
BsgI GTGCAG 1 cut(s) 12
BshFI GGCC 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 868
BsiSI CCGG 2 cut(s) 35, 465
BslI CCNNNNNNNGG 5 cut(s) 131, 359, 486, 659, 737
BsmAI GTCTC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 868
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 5 cut(s) 79, 104, 178, 376, 844
BspACI CCGC 8 cut(s) 392, 432, 435, 497, 567, 647, 656, 756
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 4 cut(s) 234, 240, 586, 880
BspEI TCCGGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 651
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 3 cut(s) 112, 186, 852
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 1 cut(s) 690
BssECI CCNNGG 2 cut(s) 125, 731
BssMI GATC 5 cut(s) 79, 104, 178, 376, 844
BssT1I CCWWGG 1 cut(s) 125
Bst2UI CCWGG 3 cut(s) 282, 354, 732
Bst4CI ACNGT 2 cut(s) 112, 803
Bst6I CTCTTC 1 cut(s) 479
BstC8I GCNNGC 3 cut(s) 89, 654, 795
BstDEI CTNAG 6 cut(s) 56, 149, 227, 242, 594, 867
BstENI CCTNNNNNAGG 1 cut(s) 129
BstF5I GGATG 3 cut(s) 31, 718, 832
BstH2I RGCGCY 3 cut(s) 527, 536, 594
BstHHI GCGC 3 cut(s) 526, 535, 593
BstKTI GATC 5 cut(s) 82, 107, 181, 379, 847
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 5 cut(s) 79, 104, 178, 376, 844
BstMWI GCNNNNNNNGC 5 cut(s) 530, 532, 590, 599, 653
BstNI CCWGG 3 cut(s) 282, 354, 732
BstNSI RCATGY 2 cut(s) 8, 188
BstPAI GACNNNNGTC 1 cut(s) 819
BstSCI CCNGG 3 cut(s) 280, 352, 730
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 96, 336
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 3 cut(s) 104, 178, 376
BstYI RGATCY 3 cut(s) 104, 178, 376
BsuRI GGCC 1 cut(s) 330
BtrI CACGTC 1 cut(s) 859
BtsCI GGATG 3 cut(s) 31, 718, 832
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 3 cut(s) 89, 654, 795
CfoI GCGC 3 cut(s) 526, 535, 593
Cfr13I GGNCC 1 cut(s) 394
CviAII CATG 3 cut(s) 5, 185, 887
DdeI CTNAG 6 cut(s) 56, 149, 227, 242, 594, 867
DpnI GATC 5 cut(s) 81, 106, 180, 378, 846
DpnII GATC 5 cut(s) 79, 104, 178, 376, 844
DrdI GACNNNNNNGTC 1 cut(s) 392
DseDI GACNNNNNNGTC 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 479
EarI CTCTTC 1 cut(s) 479
EciI GGCGGA 2 cut(s) 662, 771
Ecl136II GAGCTC 1 cut(s) 866
Eco130I CCWWGG 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 868
Eco47I GGWCC 1 cut(s) 394
Eco47III AGCGCT 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 866
Eco57I CTGAAG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 866
EcoNI CCTNNNNNAGG 1 cut(s) 129
EcoRII CCWGG 3 cut(s) 280, 352, 730
EcoT14I CCWWGG 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 868
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 3 cut(s) 8, 188, 890
FaiI YATR 5 cut(s) 6, 186, 289, 302, 888
FatI CATG 3 cut(s) 4, 184, 886
FauI CCCGC 1 cut(s) 490
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 85, 350, 435
FokI GGATG 3 cut(s) 18, 725, 839
FriOI GRGCYC 1 cut(s) 868
Fsp4HI GCNGC 3 cut(s) 85, 350, 435
GlaI GCGC 3 cut(s) 525, 534, 592
GluI GCNGC 3 cut(s) 85, 350, 435
GsuI CTGGAG 1 cut(s) 567
HaeII RGCGCY 3 cut(s) 527, 536, 594
HaeIII GGCC 1 cut(s) 330
HapII CCGG 2 cut(s) 35, 465
HhaI GCGC 3 cut(s) 526, 535, 593
Hin1II CATG 3 cut(s) 8, 188, 890
Hin6I GCGC 3 cut(s) 524, 533, 591
HinP1I GCGC 3 cut(s) 524, 533, 591
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 8 cut(s) 71, 223, 277, 357, 363, 422, 468, 542
HpaII CCGG 2 cut(s) 35, 465
HphI GGTGA 3 cut(s) 566, 581, 887
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 5 cut(s) 79, 362, 427, 814, 863
Hpy188III TCNNGA 5 cut(s) 35, 264, 380, 546, 824
Hpy8I GTNNAC 1 cut(s) 406
Hpy99I CGWCG 4 cut(s) 386, 443, 590, 863
HpyAV CCTTC 3 cut(s) 623, 668, 674
HpyCH4III ACNGT 2 cut(s) 112, 803
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 4 cut(s) 4, 29, 184, 797
HpyF10VI GCNNNNNNNGC 5 cut(s) 530, 532, 590, 599, 653
HpyF3I CTNAG 6 cut(s) 56, 149, 227, 242, 594, 867
HpySE526I ACGT 1 cut(s) 858
Hsp92II CATG 3 cut(s) 8, 188, 890
HspAI GCGC 3 cut(s) 524, 533, 591
Kpn2I TCCGGA 1 cut(s) 34
Kzo9I GATC 5 cut(s) 79, 104, 178, 376, 844
LmnI GCTCC 5 cut(s) 346, 521, 649, 855, 863
Lsp1109I GCAGC 2 cut(s) 96, 336
LweI GCATC 2 cut(s) 484, 703
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 4 cut(s) 40, 290, 313, 854
MalI GATC 5 cut(s) 81, 106, 180, 378, 846
MboI GATC 5 cut(s) 79, 104, 178, 376, 844
MboII GAAGA 4 cut(s) 66, 496, 590, 737
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 3 cut(s) 104, 178, 376
MhlI GDGCHC 1 cut(s) 868
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 2 cut(s) 211, 324
MluNI TGGCCA 1 cut(s) 330
MlyI GAGTC 3 cut(s) 80, 372, 477
MmeI TCCRAC 3 cut(s) 94, 640, 841
Mox20I TGGCCA 1 cut(s) 330
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 34
MscI TGGCCA 1 cut(s) 330
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 330
MspA1I CMGCKG 2 cut(s) 91, 656
MspI CCGG 2 cut(s) 35, 465
MspR9I CCNGG 3 cut(s) 282, 354, 732
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 3 cut(s) 282, 354, 732
MwoI GCNNNNNNNGC 5 cut(s) 530, 532, 590, 599, 653
NdeII GATC 5 cut(s) 79, 104, 178, 376, 844
NlaIII CATG 3 cut(s) 8, 188, 890
NlaIV GGNNCC 1 cut(s) 651
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 2 cut(s) 40, 854
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 188
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PctI GAATGC 1 cut(s) 136
PfeI GAWTC 5 cut(s) 223, 277, 357, 422, 542
PflMI CCANNNNNTGG 1 cut(s) 659
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 3 cut(s) 86, 351, 436
PleI GAGTC 3 cut(s) 79, 371, 476
PpsI GAGTC 3 cut(s) 79, 371, 476
PshAI GACNNNNGTC 1 cut(s) 819
Psp124BI GAGCTC 1 cut(s) 868
Psp6I CCWGG 3 cut(s) 280, 352, 730
PspGI CCWGG 3 cut(s) 280, 352, 730
PspN4I GGNNCC 1 cut(s) 651
PspPI GGNCC 1 cut(s) 394
PsuI RGATCY 3 cut(s) 104, 178, 376
PvuII CAGCTG 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 1 cut(s) 868
SalI GTCGAC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 3 cut(s) 85, 350, 435
Sau3AI GATC 5 cut(s) 79, 104, 178, 376, 844
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 3 cut(s) 80, 372, 477
ScrFI CCNGG 3 cut(s) 282, 354, 732
SduI GDGCHC 1 cut(s) 868
SfaNI GCATC 2 cut(s) 484, 703
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 2 cut(s) 211, 324
SsiI CCGC 8 cut(s) 392, 432, 435, 497, 567, 647, 656, 756
SstI GAGCTC 1 cut(s) 868
StyD4I CCNGG 3 cut(s) 280, 352, 730
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 2 cut(s) 112, 803
TaiI ACGT 1 cut(s) 861
TaqI TCGA 5 cut(s) 381, 399, 405, 471, 672
TasI AATT 2 cut(s) 211, 324
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 5 cut(s) 223, 277, 357, 422, 542
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 2 cut(s) 40, 854
TseI GCWGC 2 cut(s) 84, 349
Tsp45I GTSAC 2 cut(s) 40, 854
TspDTI ATGAA 2 cut(s) 435, 459
TspGWI ACGGA 3 cut(s) 359, 842, 872
Van91I CCANNNNNTGG 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 394
XagI CCTNNNNNAGG 1 cut(s) 129
XapI RAATTY 1 cut(s) 211
XceI RCATGY 2 cut(s) 8, 188
XmiI GTMKAC 1 cut(s) 405
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.