MD09G1256000.v1.1

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000594
Physical Location & Seq
Reverse (-)
32764599 .. 32765757
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1256000.v1.1.491

Sequence Viewer

Length: 747 bp
ATGTCGATGATGAAGAGCCAAGCAGCTTCCCTCCTCGGCCTCACCTTGGCCATCCTCTTTTTCTCAGGTGCACATGCAGCGAAAATCACTTTCACAAACAACTGCCCCAACACTGTCTGGCCAGGAACCTTAACCGGTGACCAAAAACCGCAGTTATCACTCACCGGCTTCGAACTAGCATCCAAAGCTAGCCAATCAGTGGACGCTCCATCTCCATGGTCTGGTCGCTTCTGGGGCCGAACCAGATGCTCCACGGACGCCGCTGGAAAATTCACTTGTGAAACTGCAGACTGTGGCTCTGGCCAGGTCGCATGCAACGGGGCAGGCGCAGTTCCACCAGCAACTTTAGTTGAAATCACAATTGCAGCAAACGGGGGTCAAGATTATTATGATGTTAGCCTTGTTGACGGCTTCAACTTGCCTATGTATGTCGCCCCACAAGGTGGCACGGGCGAGTGCAAGCCCTCATCGTGCCCTGCCAATGTTAACATGGCGTGCCCGGCTCAACTTCAAGTGAAAGCGGCTGATGGGAGTGTCATCAGTTGCAAAAGCGCTTGCCTTGCGTTTGGTGATTCGAAGTACTGCTGCACCCCGCCGAATGATACGCCGGAGACATGTCCTCCCACAGAGTACTCTGAGATCTTTGAGAAGCAGTGCCCTCAAGCTTATAGCTACGCTTATGATGATAAAAACAGCACATTTACCTGCAGTGGTGGACCTGACTACGTCATTACTTTCTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

249

Amino Acids

25.94

Weight (kDa)

4.62

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 33 - 248 1.2e-79 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 713
AccB7I CCANNNNNTGG 3 cut(s) 199, 221, 443
AciI CCGC 4 cut(s) 149, 261, 521, 593
AcoI YGGCCR 3 cut(s) 48, 119, 301
AcsI RAATTY 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 258
AdeI CACNNNGTG 1 cut(s) 443
AfaI GTAC 2 cut(s) 581, 632
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 4 cut(s) 46, 199, 221, 443
AflIII ACRYGT 1 cut(s) 614
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 3 cut(s) 353, 415, 512
AjnI CCWGG 2 cut(s) 121, 303
AluBI AGCT 4 cut(s) 26, 188, 665, 672
AluI AGCT 4 cut(s) 26, 188, 665, 672
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 605
Alw44I GTGCAC 1 cut(s) 69
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 5 cut(s) 37, 48, 119, 235, 301
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 4 cut(s) 23, 77, 365, 585
ApoI RAATTY 1 cut(s) 269
AsiGI ACCGGT 1 cut(s) 134
AspLEI GCGC 2 cut(s) 329, 554
AspS9I GGNCC 2 cut(s) 235, 716
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 4 cut(s) 34, 149, 154, 581
AsuII TTCGAA 2 cut(s) 171, 575
AsuNHI GCTAGC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 716
BaeGI GKGCMC 4 cut(s) 73, 476, 500, 659
BalI TGGCCA 3 cut(s) 50, 121, 303
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 4 cut(s) 35, 89, 377, 572
BccI CCATC 3 cut(s) 59, 217, 521
BceAI ACGGC 1 cut(s) 424
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 2 cut(s) 123, 305
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 1 cut(s) 605
BfaI CTAG 2 cut(s) 176, 189
BfmI CTRYAG 2 cut(s) 285, 706
BfoI RGCGCY 1 cut(s) 555
BfuAI ACCTGC 1 cut(s) 713
BglII AGATCT 1 cut(s) 639
BisI GCNGC 6 cut(s) 24, 78, 261, 366, 522, 586
BlsI GCNGC 6 cut(s) 25, 79, 262, 367, 523, 587
BmcAI AGTACT 2 cut(s) 581, 632
Bme1390I CCNGG 3 cut(s) 123, 305, 500
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 2 cut(s) 235, 716
BmiI GGNNCC 2 cut(s) 127, 236
BmrFI CCNGG 3 cut(s) 123, 305, 500
BmsI GCATC 2 cut(s) 188, 236
BmtI GCTAGC 1 cut(s) 192
Bpu14I TTCGAA 2 cut(s) 171, 575
BpuEI CTTGAG 1 cut(s) 645
BpuMI CCSGG 1 cut(s) 500
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 4 cut(s) 34, 45, 215, 252
BsaWI WCCGGW 1 cut(s) 134
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 199, 221, 443
Bse118I RCCGGY 2 cut(s) 134, 164
BseBI CCWGG 2 cut(s) 123, 305
BseDI CCNNGG 4 cut(s) 34, 45, 215, 252
BseGI GGATG 2 cut(s) 51, 179
BseLI CCNNNNNNNGG 4 cut(s) 46, 199, 221, 443
BseMII CTCAG 2 cut(s) 78, 627
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 4 cut(s) 73, 476, 500, 659
BseXI GCAGC 4 cut(s) 35, 89, 377, 572
BsgI GTGCAG 1 cut(s) 571
BshFI GGCC 5 cut(s) 39, 50, 121, 237, 303
BshTI ACCGGT 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 4 cut(s) 135, 165, 500, 608
BslI CCNNNNNNNGG 4 cut(s) 46, 199, 221, 443
BsmAI GTCTC 1 cut(s) 605
BsnI GGCC 5 cut(s) 39, 50, 121, 237, 303
Bsp119I TTCGAA 2 cut(s) 171, 575
Bsp1286I GDGCHC 4 cut(s) 73, 476, 500, 659
Bsp143I GATC 1 cut(s) 639
Bsp19I CCATGG 1 cut(s) 215
BspACI CCGC 4 cut(s) 149, 261, 521, 593
BspANI GGCC 5 cut(s) 39, 50, 121, 237, 303
BspCNI CTCAG 2 cut(s) 77, 628
BspLI GGNNCC 2 cut(s) 127, 236
BspMAI CTGCAG 2 cut(s) 289, 710
BspMI ACCTGC 1 cut(s) 713
BspOI GCTAGC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 8
BspT104I TTCGAA 2 cut(s) 171, 575
BsrFI RCCGGY 2 cut(s) 134, 164
BssAI RCCGGY 2 cut(s) 134, 164
BssECI CCNNGG 4 cut(s) 34, 45, 215, 252
BssMI GATC 1 cut(s) 639
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 45, 215
Bst2UI CCWGG 2 cut(s) 123, 305
Bst4CI ACNGT 2 cut(s) 115, 293
Bst6I CTCTTC 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 258
BstBI TTCGAA 2 cut(s) 171, 575
BstC8I GCNNGC 6 cut(s) 190, 313, 325, 461, 496, 556
BstDEI CTNAG 2 cut(s) 64, 636
BstDSI CCRYGG 2 cut(s) 215, 252
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 2 cut(s) 51, 179
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 2 cut(s) 329, 554
BstKTI GATC 1 cut(s) 642
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 1 cut(s) 639
BstMWI GCNNNNNNNGC 5 cut(s) 77, 185, 234, 500, 560
BstNI CCWGG 2 cut(s) 123, 305
BstNSI RCATGY 3 cut(s) 77, 315, 618
BstPI GGTNACC 1 cut(s) 137
BstSCI CCNGG 3 cut(s) 121, 303, 498
BstSFI CTRYAG 2 cut(s) 285, 706
BstSLI GKGCMC 4 cut(s) 73, 476, 500, 659
BstV1I GCAGC 4 cut(s) 35, 89, 377, 572
BstX2I RGATCY 1 cut(s) 639
BstXI CCANNNNNNTGG 1 cut(s) 216
BstYI RGATCY 1 cut(s) 639
BsuRI GGCC 5 cut(s) 39, 50, 121, 237, 303
BtgI CCRYGG 2 cut(s) 215, 252
BtsCI GGATG 2 cut(s) 51, 179
BtsI GCAGTG 2 cut(s) 659, 715
BtsIMutI CAGTG 4 cut(s) 111, 204, 659, 715
BveI ACCTGC 1 cut(s) 713
Cac8I GCNNGC 6 cut(s) 190, 313, 325, 461, 496, 556
CfoI GCGC 2 cut(s) 329, 554
Cfr10I RCCGGY 2 cut(s) 134, 164
Cfr13I GGNCC 2 cut(s) 235, 716
CseI GACGC 2 cut(s) 212, 266
Csp6I GTAC 2 cut(s) 580, 631
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 5 cut(s) 74, 216, 312, 490, 615
CviQI GTAC 2 cut(s) 580, 631
DdeI CTNAG 2 cut(s) 64, 636
DpnI GATC 1 cut(s) 641
DpnII GATC 1 cut(s) 639
DraIII CACNNNGTG 1 cut(s) 443
EaeI YGGCCR 3 cut(s) 48, 119, 301
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco130I CCWWGG 2 cut(s) 45, 215
Eco47I GGWCC 1 cut(s) 716
Eco47III AGCGCT 1 cut(s) 553
Eco91I GGTNACC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 121, 303
EcoT14I CCWWGG 2 cut(s) 45, 215
ErhI CCWWGG 2 cut(s) 45, 215
FaeI CATG 5 cut(s) 77, 219, 315, 493, 618
FatI CATG 5 cut(s) 73, 215, 311, 489, 614
FauI CCCGC 1 cut(s) 600
Fnu4HI GCNGC 6 cut(s) 24, 78, 261, 366, 522, 586
FokI GGATG 2 cut(s) 38, 166
Fsp4HI GCNGC 6 cut(s) 24, 78, 261, 366, 522, 586
FspBI CTAG 2 cut(s) 176, 189
GlaI GCGC 2 cut(s) 328, 553
GluI GCNGC 6 cut(s) 24, 78, 261, 366, 522, 586
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 5 cut(s) 39, 50, 121, 237, 303
HapII CCGG 4 cut(s) 135, 165, 500, 608
HgaI GACGC 2 cut(s) 212, 266
HhaI GCGC 2 cut(s) 329, 554
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 5 cut(s) 77, 219, 315, 493, 618
Hin6I GCGC 2 cut(s) 327, 552
HinP1I GCGC 2 cut(s) 327, 552
HincII GTYRAC 2 cut(s) 406, 487
HindII GTYRAC 2 cut(s) 406, 487
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 1 cut(s) 572
HpaI GTTAAC 1 cut(s) 487
HpaII CCGG 4 cut(s) 135, 165, 500, 608
HphI GGTGA 4 cut(s) 34, 149, 154, 581
Hpy166II GTNNAC 5 cut(s) 71, 202, 406, 487, 716
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 5 cut(s) 71, 202, 406, 487, 716
HpyCH4III ACNGT 2 cut(s) 115, 293
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 9 cut(s) 71, 77, 287, 315, 365, 459, 546, 588, 708
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 185, 234, 500, 560
HpyF3I CTNAG 2 cut(s) 64, 636
HpySE526I ACGT 1 cut(s) 726
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 5 cut(s) 77, 219, 315, 493, 618
HspAI GCGC 2 cut(s) 327, 552
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 1 cut(s) 639
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 2 cut(s) 211, 254
Lsp1109I GCAGC 4 cut(s) 35, 89, 377, 572
LweI GCATC 2 cut(s) 188, 236
MaeI CTAG 2 cut(s) 176, 189
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 641
MboI GATC 1 cut(s) 639
MboII GAAGA 1 cut(s) 25
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 1 cut(s) 639
MhlI GDGCHC 4 cut(s) 73, 476, 500, 659
MlsI TGGCCA 3 cut(s) 50, 121, 303
MluCI AATT 2 cut(s) 269, 360
MluNI TGGCCA 3 cut(s) 50, 121, 303
MnlI CCTC 7 cut(s) 41, 44, 50, 65, 475, 630, 669
Mox20I TGGCCA 3 cut(s) 50, 121, 303
MscI TGGCCA 3 cut(s) 50, 121, 303
MseI TTAA 2 cut(s) 131, 486
MslI CAYNNNNRTG 1 cut(s) 214
Msp20I TGGCCA 3 cut(s) 50, 121, 303
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 4 cut(s) 135, 165, 500, 608
MspR9I CCNGG 3 cut(s) 123, 305, 500
MunI CAATTG 1 cut(s) 360
MvaI CCWGG 2 cut(s) 123, 305
MwoI GCNNNNNNNGC 5 cut(s) 77, 185, 234, 500, 560
NciI CCSGG 1 cut(s) 500
NcoI CCATGG 1 cut(s) 215
NdeII GATC 1 cut(s) 639
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 5 cut(s) 77, 219, 315, 493, 618
NlaIV GGNNCC 2 cut(s) 127, 236
NmeAIII GCCGAG 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 3 cut(s) 77, 315, 618
NspV TTCGAA 2 cut(s) 171, 575
PaeI GCATGC 1 cut(s) 315
PciI ACATGT 1 cut(s) 614
PciSI GCTCTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 572
PflFI GACNNNGTC 1 cut(s) 725
PflMI CCANNNNNTGG 3 cut(s) 199, 221, 443
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 6 cut(s) 25, 79, 262, 367, 523, 587
PscI ACATGT 1 cut(s) 614
Psp6I CCWGG 2 cut(s) 121, 303
PspEI GGTNACC 1 cut(s) 137
PspGI CCWGG 2 cut(s) 121, 303
PspN4I GGNNCC 2 cut(s) 127, 236
PspPI GGNCC 2 cut(s) 235, 716
PstI CTGCAG 2 cut(s) 289, 710
PsuI RGATCY 1 cut(s) 639
PsyI GACNNNGTC 1 cut(s) 725
RsaI GTAC 2 cut(s) 581, 632
RsaNI GTAC 2 cut(s) 580, 631
RseI CAYNNNNRTG 1 cut(s) 214
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 131, 486
SatI GCNGC 6 cut(s) 24, 78, 261, 366, 522, 586
Sau3AI GATC 1 cut(s) 639
Sau96I GGNCC 2 cut(s) 235, 716
ScaI AGTACT 2 cut(s) 581, 632
ScrFI CCNGG 3 cut(s) 123, 305, 500
SduI GDGCHC 4 cut(s) 73, 476, 500, 659
SfaNI GCATC 2 cut(s) 188, 236
SfcI CTRYAG 2 cut(s) 285, 706
SfuI TTCGAA 2 cut(s) 171, 575
SinI GGWCC 1 cut(s) 716
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 660
SmoI CTYRAG 1 cut(s) 660
SphI GCATGC 1 cut(s) 315
Sse9I AATT 2 cut(s) 269, 360
SsiI CCGC 4 cut(s) 149, 261, 521, 593
SspMI CTAG 2 cut(s) 176, 189
StyD4I CCNGG 3 cut(s) 121, 303, 498
StyI CCWWGG 2 cut(s) 45, 215
TaaI ACNGT 2 cut(s) 115, 293
TaiI ACGT 1 cut(s) 729
TaqI TCGA 3 cut(s) 5, 171, 575
TasI AATT 2 cut(s) 269, 360
TatI WGTACW 2 cut(s) 579, 630
TauI GCSGC 2 cut(s) 263, 524
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 2 cut(s) 131, 486
Tru9I TTAA 2 cut(s) 131, 486
TscAI CASTG 4 cut(s) 118, 204, 659, 715
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 4 cut(s) 23, 77, 365, 585
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 26
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 4 cut(s) 118, 204, 659, 715
Tth111I GACNNNGTC 1 cut(s) 725
Van91I CCANNNNNTGG 3 cut(s) 199, 221, 443
VneI GTGCAC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 1 cut(s) 269
XceI RCATGY 3 cut(s) 77, 315, 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XspI CTAG 2 cut(s) 176, 189
ZrmI AGTACT 2 cut(s) 581, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.