FvH4_5g06220

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000594
Physical Location & Seq
Forward (+)
3666528 .. 3669015
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06220.t1

Sequence Viewer

Length: 744 bp
ATGAAAATCCAAGTACTCCCCTACCTTACCTTCGCCTGCTTCCTTTTCTTTCCAGGCGCACTTCCGGCCACAATTTCCATCACAAACAAGTGCTCCTTCACGGTCTGGCCAGCAACCCAAACTTCTGAAAACAAACCTCCATTAGCATTGCCGAGTAATGTGTTGGCACCCCAAGCTAGCACCACCGTGGTCACTCCGGTTCCATGGAATGGCCGCTTCTGGGGCCGTACCAACTGCTTCACGGACAATTCCGGAAAATTCACTTGTGCCCCACCAGGGGATTGCGCATCCGGTCAGGAATCATGCAACGGAAATGGAGGAGTTCCTCCAGCCACGTTGGTGGAATTTAATATCGCAGCAGGCGGGGGTCAAGATTTCTACGATGTTAGTCTTGTTGACGGCTTCAACTTGCCCATGTCCGTGGCCGCTCAAGGCGGTCATGAGCCCGGGGACTGTCGAACCTCTACCTGCAGAGCCAACGTAAACGCTATGTGTCCGAGTGAACTACAAGTAACTGGGGCTGGCGGGAGCGTGGTCGGCTGCATGAGCGCGTGCACCAAGTTCCATGAGCCCAGGTATTGCTGCAGTCCACCTAATGAAAAGCCAGAGACATGTCCTCCTACAGACTACTCTAGGAAGTTTAGTGAACAATGCCCTGAGGCTTACAGCTACGCTTATGATGACAAGAAAGGCACGTTCACTTGCTCCGGGGGACCTAACTACGCTCTTACTTTCTGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

248

Amino Acids

26.19

Weight (kDa)

5.16

Isoelectric Point (pI)

55.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 247 2e-71 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 476
AccB1I GGYRCC 1 cut(s) 166
AccB7I CCANNNNNTGG 1 cut(s) 209
AccBSI CCGCTC 1 cut(s) 428
AccII CGCG 1 cut(s) 551
AccIII TCCGGA 1 cut(s) 251
AciI CCGC 5 cut(s) 214, 363, 426, 435, 525
AcoI YGGCCR 4 cut(s) 66, 107, 211, 423
AcsI RAATTY 2 cut(s) 257, 344
AfaI GTAC 2 cut(s) 15, 229
AfiI CCNNNNNNNGG 4 cut(s) 209, 220, 276, 277
AflIII ACRYGT 1 cut(s) 611
AgsI TTSAA 1 cut(s) 406
AjnI CCWGG 3 cut(s) 52, 274, 572
AleI CACNNNNGTG 2 cut(s) 185, 338
AluBI AGCT 2 cut(s) 176, 669
AluI AGCT 2 cut(s) 176, 669
Alw21I GWGCWC 2 cut(s) 95, 557
Alw26I GTCTC 1 cut(s) 602
Alw44I GTGCAC 1 cut(s) 553
Ama87I CYCGRG 1 cut(s) 446
Aor13HI TCCGGA 1 cut(s) 251
AoxI GGCC 5 cut(s) 66, 107, 211, 223, 423
ApaLI GTGCAC 1 cut(s) 553
ApeKI GCWGC 3 cut(s) 356, 540, 582
ApoI RAATTY 2 cut(s) 257, 344
AspLEI GCGC 3 cut(s) 59, 287, 551
AspS9I GGNCC 2 cut(s) 223, 713
AsuC2I CCSGG 3 cut(s) 447, 448, 709
AsuNHI GCTAGC 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 713
AxyI CCTNAGG 1 cut(s) 657
BaeGI GKGCMC 2 cut(s) 271, 557
BalI TGGCCA 1 cut(s) 109
BanI GGYRCC 1 cut(s) 166
BanII GRGCYC 2 cut(s) 447, 573
Bbv12I GWGCWC 2 cut(s) 95, 557
BbvI GCAGC 3 cut(s) 368, 527, 569
BccI CCATC 1 cut(s) 86
BceAI ACGGC 2 cut(s) 210, 415
BciT130I CCWGG 3 cut(s) 54, 276, 574
BcnI CCSGG 3 cut(s) 447, 448, 709
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 2 cut(s) 177, 633
BfmI CTRYAG 3 cut(s) 469, 583, 621
BfuAI ACCTGC 1 cut(s) 476
BisI GCNGC 5 cut(s) 214, 357, 426, 541, 583
BlsI GCNGC 5 cut(s) 215, 358, 427, 542, 584
BmcAI AGTACT 1 cut(s) 15
Bme1390I CCNGG 6 cut(s) 54, 276, 447, 448, 574, 709
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 223, 713
BmiI GGNNCC 4 cut(s) 168, 201, 224, 714
BmrFI CCNGG 6 cut(s) 54, 276, 447, 448, 574, 709
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 1 cut(s) 296
BmtI GCTAGC 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 414
BpuMI CCSGG 3 cut(s) 447, 448, 709
BsaJI CCNNGG 8 cut(s) 186, 203, 275, 420, 446, 447, 572, 708
BsaWI WCCGGW 3 cut(s) 196, 251, 290
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 601, 631
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 220, 276, 277
Bse1I ACTGG 1 cut(s) 520
Bse21I CCTNAGG 1 cut(s) 657
Bse3DI GCAATG 1 cut(s) 146
BseAI TCCGGA 1 cut(s) 251
BseBI CCWGG 3 cut(s) 54, 276, 574
BseDI CCNNGG 8 cut(s) 186, 203, 275, 420, 446, 447, 572, 708
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 4 cut(s) 209, 220, 276, 277
BseMI GCAATG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 333
BseSI GKGCMC 2 cut(s) 271, 557
BseXI GCAGC 3 cut(s) 368, 527, 569
Bsh1236I CGCG 1 cut(s) 551
BshFI GGCC 5 cut(s) 68, 109, 213, 225, 425
BshNI GGYRCC 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 95, 557
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 6 cut(s) 65, 197, 252, 291, 447, 708
BslFI GGGAC 2 cut(s) 464, 726
BslI CCNNNNNNNGG 4 cut(s) 209, 220, 276, 277
BsmAI GTCTC 1 cut(s) 602
BsmFI GGGAC 2 cut(s) 464, 726
BsnI GGCC 5 cut(s) 68, 109, 213, 225, 425
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 5 cut(s) 95, 271, 447, 557, 573
Bsp13I TCCGGA 1 cut(s) 251
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 5 cut(s) 214, 363, 426, 435, 525
BspANI GGCC 5 cut(s) 68, 109, 213, 225, 425
BspCNI CTCAG 1 cut(s) 649
BspEI TCCGGA 1 cut(s) 251
BspFNI CGCG 1 cut(s) 551
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 4 cut(s) 168, 201, 224, 714
BspMAI CTGCAG 2 cut(s) 473, 587
BspMI ACCTGC 1 cut(s) 476
BspOI GCTAGC 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 166
BsrBI CCGCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 146
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 8 cut(s) 186, 203, 275, 420, 446, 447, 572, 708
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 3 cut(s) 54, 276, 574
Bst4CI ACNGT 3 cut(s) 103, 187, 455
BstC8I GCNNGC 6 cut(s) 37, 111, 178, 361, 523, 553
BstDEI CTNAG 1 cut(s) 657
BstDSI CCRYGG 3 cut(s) 186, 203, 420
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 551
BstHHI GCGC 3 cut(s) 59, 287, 551
BstMAI GTCTC 1 cut(s) 602
BstMWI GCNNNNNNNGC 5 cut(s) 65, 173, 222, 537, 546
BstNI CCWGG 3 cut(s) 54, 276, 574
BstNSI RCATGY 1 cut(s) 615
BstSCI CCNGG 6 cut(s) 52, 274, 445, 446, 572, 707
BstSFI CTRYAG 3 cut(s) 469, 583, 621
BstSLI GKGCMC 2 cut(s) 271, 557
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 3 cut(s) 368, 527, 569
BstXI CCANNNNNNTGG 2 cut(s) 340, 421
Bsu36I CCTNAGG 1 cut(s) 657
BsuRI GGCC 5 cut(s) 68, 109, 213, 225, 425
BtgI CCRYGG 3 cut(s) 186, 203, 420
BtsCI GGATG 1 cut(s) 287
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 6 cut(s) 37, 111, 178, 361, 523, 553
CciI TCATGA 1 cut(s) 439
CfoI GCGC 3 cut(s) 59, 287, 551
Cfr13I GGNCC 2 cut(s) 223, 713
Cfr9I CCCGGG 1 cut(s) 446
Csp6I GTAC 2 cut(s) 14, 228
CviAII CATG 7 cut(s) 204, 303, 415, 440, 544, 566, 612
CviQI GTAC 2 cut(s) 14, 228
DdeI CTNAG 1 cut(s) 657
EaeI YGGCCR 4 cut(s) 66, 107, 211, 423
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 2 cut(s) 447, 573
Eco47I GGWCC 1 cut(s) 713
Eco81I CCTNAGG 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 713
EcoRII CCWGG 3 cut(s) 52, 274, 572
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 2 cut(s) 447, 573
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 7 cut(s) 207, 306, 418, 443, 547, 569, 615
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 2 cut(s) 464, 726
FatI CATG 7 cut(s) 203, 302, 414, 439, 543, 565, 611
FauI CCCGC 2 cut(s) 356, 518
Fnu4HI GCNGC 5 cut(s) 214, 357, 426, 541, 583
FokI GGATG 1 cut(s) 274
FriOI GRGCYC 2 cut(s) 447, 573
Fsp4HI GCNGC 5 cut(s) 214, 357, 426, 541, 583
FspBI CTAG 2 cut(s) 177, 633
FspI TGCGCA 1 cut(s) 286
GlaI GCGC 3 cut(s) 58, 286, 550
GluI GCNGC 5 cut(s) 214, 357, 426, 541, 583
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 5 cut(s) 68, 109, 213, 225, 425
HapII CCGG 6 cut(s) 65, 197, 252, 291, 447, 708
HhaI GCGC 3 cut(s) 59, 287, 551
Hin1II CATG 7 cut(s) 207, 306, 418, 443, 547, 569, 615
Hin6I GCGC 3 cut(s) 57, 285, 549
HinP1I GCGC 3 cut(s) 57, 285, 549
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 1 cut(s) 299
HpaII CCGG 6 cut(s) 65, 197, 252, 291, 447, 708
Hpy166II GTNNAC 7 cut(s) 397, 484, 503, 555, 590, 647, 699
Hpy188I TCNGA 2 cut(s) 127, 498
Hpy188III TCNNGA 4 cut(s) 252, 296, 371, 440
Hpy8I GTNNAC 7 cut(s) 397, 484, 503, 555, 590, 647, 699
HpyAV CCTTC 2 cut(s) 40, 106
HpyCH4III ACNGT 3 cut(s) 103, 187, 455
HpyCH4IV ACGT 3 cut(s) 335, 480, 695
HpyCH4V TGCA 5 cut(s) 306, 471, 543, 555, 585
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 173, 222, 537, 546
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 3 cut(s) 335, 480, 695
Hsp92II CATG 7 cut(s) 207, 306, 418, 443, 547, 569, 615
HspAI GCGC 3 cut(s) 57, 285, 549
Kpn2I TCCGGA 1 cut(s) 251
LmnI GCTCC 3 cut(s) 98, 528, 710
Lsp1109I GCAGC 3 cut(s) 368, 527, 569
LweI GCATC 1 cut(s) 296
MaeI CTAG 2 cut(s) 177, 633
MaeII ACGT 3 cut(s) 335, 480, 695
MaeIII GTNAC 2 cut(s) 190, 511
MbiI CCGCTC 1 cut(s) 428
MhlI GDGCHC 5 cut(s) 95, 271, 447, 557, 573
MlsI TGGCCA 1 cut(s) 109
MluCI AATT 4 cut(s) 72, 247, 257, 344
MluNI TGGCCA 1 cut(s) 109
MnlI CCTC 6 cut(s) 147, 311, 336, 472, 627, 652
Mox20I TGGCCA 1 cut(s) 109
MroI TCCGGA 1 cut(s) 251
MscI TGGCCA 1 cut(s) 109
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 3 cut(s) 185, 338, 419
Msp20I TGGCCA 1 cut(s) 109
MspI CCGG 6 cut(s) 65, 197, 252, 291, 447, 708
MspR9I CCNGG 6 cut(s) 54, 276, 447, 448, 574, 709
MvaI CCWGG 3 cut(s) 54, 276, 574
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 5 cut(s) 65, 173, 222, 537, 546
NciI CCSGG 3 cut(s) 447, 448, 709
NcoI CCATGG 1 cut(s) 203
NheI GCTAGC 1 cut(s) 176
NlaIII CATG 7 cut(s) 207, 306, 418, 443, 547, 569, 615
NlaIV GGNNCC 4 cut(s) 168, 201, 224, 714
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 286
NspI RCATGY 1 cut(s) 615
OliI CACNNNNGTG 2 cut(s) 185, 338
PagI TCATGA 1 cut(s) 439
PciI ACATGT 1 cut(s) 611
PfeI GAWTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 5 cut(s) 215, 358, 427, 542, 584
PpuMI RGGWCCY 1 cut(s) 713
PscI ACATGT 1 cut(s) 611
Psp5II RGGWCCY 1 cut(s) 713
Psp6I CCWGG 3 cut(s) 52, 274, 572
PspGI CCWGG 3 cut(s) 52, 274, 572
PspN4I GGNNCC 4 cut(s) 168, 201, 224, 714
PspPI GGNCC 2 cut(s) 223, 713
PspPPI RGGWCCY 1 cut(s) 713
PstI CTGCAG 2 cut(s) 473, 587
RsaI GTAC 2 cut(s) 15, 229
RsaNI GTAC 2 cut(s) 14, 228
RseI CAYNNNNRTG 3 cut(s) 185, 338, 419
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 5 cut(s) 214, 357, 426, 541, 583
Sau96I GGNCC 2 cut(s) 223, 713
ScaI AGTACT 1 cut(s) 15
ScrFI CCNGG 6 cut(s) 54, 276, 447, 448, 574, 709
SduI GDGCHC 5 cut(s) 95, 271, 447, 557, 573
SfaNI GCATC 1 cut(s) 296
SfcI CTRYAG 3 cut(s) 469, 583, 621
SinI GGWCC 1 cut(s) 713
SmaI CCCGGG 1 cut(s) 448
SmiMI CAYNNNNRTG 3 cut(s) 185, 338, 419
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse9I AATT 4 cut(s) 72, 247, 257, 344
SsiI CCGC 5 cut(s) 214, 363, 426, 435, 525
SspMI CTAG 2 cut(s) 177, 633
StyD4I CCNGG 6 cut(s) 52, 274, 445, 446, 572, 707
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 3 cut(s) 103, 187, 455
TaiI ACGT 3 cut(s) 338, 483, 698
TaqI TCGA 1 cut(s) 457
TasI AATT 4 cut(s) 72, 247, 257, 344
TatI WGTACW 1 cut(s) 13
TauI GCSGC 2 cut(s) 216, 428
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 3 cut(s) 356, 540, 582
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 17, 612
TspGWI ACGGA 3 cut(s) 257, 324, 409
TspMI CCCGGG 1 cut(s) 446
Van91I CCANNNNNTGG 1 cut(s) 209
VneI GTGCAC 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 713
XapI RAATTY 2 cut(s) 257, 344
XceI RCATGY 1 cut(s) 615
XmaI CCCGGG 1 cut(s) 446
XspI CTAG 2 cut(s) 177, 633
ZrmI AGTACT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.