Prupe.4G141100_v2.0.a1

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000594
Physical Location & Seq
Forward (+)
7954738 .. 7955635
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G141100.1

Sequence Viewer

Length: 681 bp
ATGATGAGATTTCAAGCGTTTATCGGCATTTTACTGGTCTTCCTCTCAGTTTGGCCAGGAACCCTAACTGGAGGCGGTGGCTCACAATTATCTTCCACCGGATTCGAGTTAGCATCTGGTGCTTCGACATCTTTAAATGTCCAAGCTCCATGGTCCGGCCGCTTTTGGGGCCGCACCCAGTGCTCCACAGACTCCTCAGGAAAGTTTAGTTGCACCACGGGCGATTGTGGCTCTGGCAAGACTGCGTGCAACGGTGCTGGTGCAATTCCACCAGCATTACTGGTGGAATTGACCTTAGCAACCAATGGAGGACAAGATTTCTATGATGTAAGCCTTGTTGATGGCTTCAACTTGCCCATTATGCTAGCCCCCCAAGGGGGATATGGGGACTGCAACTCCACAAGTTGTGCAAGCAATGTCAATACTGTTTGTCCTCCTAAGTTGTCAGTGAAAGGATCAGATGGGAGTGTGATTGGCTGCAAAAGTGCATGCATGGCTTTAAATCAGCCCCAATATTGTTGCACTGGTGCTTATGGCTCCCCAGATACATGCCCTCCTACTAACTATTCAAAGATCTTCAAGAACCAGTGTCCTCAGGCTTATAGTTATGCTTATGATGACAAATCTAGCACTTTCACATGCTTTGGTGGCCCTAATTATGCAATTACTTTCTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

227

Amino Acids

23.42

Weight (kDa)

5.18

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 75, 160, 172
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 2 cut(s) 53, 157
AdeI CACNNNGTG 1 cut(s) 180
AfiI CCNNNNNNNGG 5 cut(s) 155, 166, 375, 376, 377
AgsI TTSAA 4 cut(s) 14, 349, 570, 580
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw21I GWGCWC 1 cut(s) 185
AlwI GGATC 1 cut(s) 463
AoxI GGCC 4 cut(s) 53, 157, 169, 649
ApeKI GCWGC 1 cut(s) 477
AspS9I GGNCC 3 cut(s) 153, 169, 650
AsuNHI GCTAGC 1 cut(s) 364
AvaII GGWCC 1 cut(s) 153
AxyI CCTNAGG 2 cut(s) 196, 594
BalI TGGCCA 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 464
BccI CCATC 2 cut(s) 335, 455
BciT130I CCWGG 1 cut(s) 57
BfaI CTAG 2 cut(s) 365, 627
BglII AGATCT 1 cut(s) 573
BisI GCNGC 3 cut(s) 160, 172, 478
BlsI GCNGC 3 cut(s) 161, 173, 479
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 153, 169, 650
BmiI GGNNCC 3 cut(s) 61, 170, 538
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 122
BmtI GCTAGC 1 cut(s) 368
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 295
BsaJI CCNNGG 3 cut(s) 149, 216, 373
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 4 cut(s) 380, 410, 538, 568
Bsc4I CCNNNNNNNGG 5 cut(s) 155, 166, 375, 376, 377
Bse1I ACTGG 6 cut(s) 39, 73, 178, 285, 529, 586
Bse21I CCTNAGG 2 cut(s) 196, 594
Bse3DI GCAATG 1 cut(s) 421
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 149, 216, 373
BseLI CCNNNNNNNGG 5 cut(s) 155, 166, 375, 376, 377
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 3 cut(s) 60, 210, 608
BseNI ACTGG 6 cut(s) 39, 73, 178, 285, 529, 586
BseRI GAGGAG 1 cut(s) 184
BseX3I CGGCCG 1 cut(s) 157
BseXI GCAGC 1 cut(s) 464
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 4 cut(s) 55, 159, 171, 651
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 2 cut(s) 99, 156
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 5 cut(s) 155, 166, 375, 376, 377
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 4 cut(s) 55, 159, 171, 651
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 455, 573
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 3 cut(s) 75, 160, 172
BspANI GGCC 4 cut(s) 55, 159, 171, 651
BspCNI CTCAG 3 cut(s) 59, 209, 607
BspLI GGNNCC 3 cut(s) 61, 170, 538
BspOI GCTAGC 1 cut(s) 368
BspPI GGATC 1 cut(s) 463
BsrDI GCAATG 1 cut(s) 421
BsrI ACTGG 6 cut(s) 39, 73, 178, 285, 529, 586
BssECI CCNNGG 3 cut(s) 149, 216, 373
BssMI GATC 2 cut(s) 455, 573
BssT1I CCWWGG 2 cut(s) 149, 373
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 254, 427
BstAPI GCANNNNNTGC 2 cut(s) 119, 180
BstC8I GCNNGC 4 cut(s) 247, 366, 412, 490
BstDEI CTNAG 5 cut(s) 46, 196, 295, 438, 594
BstDSI CCRYGG 2 cut(s) 149, 216
BstKTI GATC 2 cut(s) 458, 576
BstMBI GATC 2 cut(s) 455, 573
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 8 cut(s) 119, 168, 180, 219, 228, 361, 494, 648
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 3 cut(s) 492, 552, 642
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 464
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 573
BstYI RGATCY 1 cut(s) 573
BstZI CGGCCG 1 cut(s) 157
Bsu36I CCTNAGG 2 cut(s) 196, 594
BsuRI GGCC 4 cut(s) 55, 159, 171, 651
BtgI CCRYGG 2 cut(s) 149, 216
BtsIMutI CAGTG 4 cut(s) 185, 453, 522, 593
Cac8I GCNNGC 4 cut(s) 247, 366, 412, 490
Cfr13I GGNCC 3 cut(s) 153, 169, 650
CviAII CATG 5 cut(s) 150, 489, 493, 549, 639
DdeI CTNAG 5 cut(s) 46, 196, 295, 438, 594
DpnI GATC 2 cut(s) 457, 575
DpnII GATC 2 cut(s) 455, 573
DraI TTTAAA 2 cut(s) 135, 501
DraIII CACNNNGTG 1 cut(s) 180
EaeI YGGCCR 2 cut(s) 53, 157
EagI CGGCCG 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 149, 373
Eco47I GGWCC 1 cut(s) 153
Eco52I CGGCCG 1 cut(s) 157
Eco81I CCTNAGG 2 cut(s) 196, 594
EcoRII CCWGG 1 cut(s) 55
EcoT14I CCWWGG 2 cut(s) 149, 373
EcoT22I ATGCAT 1 cut(s) 494
ErhI CCWWGG 2 cut(s) 149, 373
FaeI CATG 5 cut(s) 153, 492, 496, 552, 642
FaqI GGGAC 1 cut(s) 401
FatI CATG 5 cut(s) 149, 488, 492, 548, 638
Fnu4HI GCNGC 3 cut(s) 160, 172, 478
Fsp4HI GCNGC 3 cut(s) 160, 172, 478
FspBI CTAG 2 cut(s) 365, 627
GluI GCNGC 3 cut(s) 160, 172, 478
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 4 cut(s) 55, 159, 171, 651
HapII CCGG 2 cut(s) 99, 156
Hin1II CATG 5 cut(s) 153, 492, 496, 552, 642
HinfI GANTC 2 cut(s) 102, 191
HpaII CCGG 2 cut(s) 99, 156
Hpy188I TCNGA 1 cut(s) 460
Hpy188III TCNNGA 2 cut(s) 198, 580
HpyCH4III ACNGT 2 cut(s) 254, 427
HpyF10VI GCNNNNNNNGC 8 cut(s) 119, 168, 180, 219, 228, 361, 494, 648
HpyF3I CTNAG 5 cut(s) 46, 196, 295, 438, 594
Hsp92II CATG 5 cut(s) 153, 492, 496, 552, 642
Kzo9I GATC 2 cut(s) 455, 573
LmnI GCTCC 3 cut(s) 151, 188, 542
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 1 cut(s) 122
MaeI CTAG 2 cut(s) 365, 627
MalI GATC 2 cut(s) 457, 575
MboI GATC 2 cut(s) 455, 573
MboII GAAGA 3 cut(s) 31, 84, 568
MflI RGATCY 1 cut(s) 573
MhlI GDGCHC 1 cut(s) 185
MlsI TGGCCA 1 cut(s) 55
MluCI AATT 5 cut(s) 86, 264, 287, 655, 663
MluNI TGGCCA 1 cut(s) 55
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 7 cut(s) 53, 65, 205, 302, 444, 564, 603
Mox20I TGGCCA 1 cut(s) 55
Mph1103I ATGCAT 1 cut(s) 494
MscI TGGCCA 1 cut(s) 55
MseI TTAA 2 cut(s) 134, 500
Msp20I TGGCCA 1 cut(s) 55
MspI CCGG 2 cut(s) 99, 156
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 8 cut(s) 119, 168, 180, 219, 228, 361, 494, 648
NcoI CCATGG 1 cut(s) 149
NdeII GATC 2 cut(s) 455, 573
NheI GCTAGC 1 cut(s) 364
NlaIII CATG 5 cut(s) 153, 492, 496, 552, 642
NlaIV GGNNCC 3 cut(s) 61, 170, 538
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 3 cut(s) 492, 552, 642
PaeI GCATGC 1 cut(s) 492
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 3 cut(s) 161, 173, 479
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 3 cut(s) 61, 170, 538
PspPI GGNCC 3 cut(s) 153, 169, 650
PsuI RGATCY 1 cut(s) 573
SaqAI TTAA 2 cut(s) 134, 500
SatI GCNGC 3 cut(s) 160, 172, 478
Sau3AI GATC 2 cut(s) 455, 573
Sau96I GGNCC 3 cut(s) 153, 169, 650
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 185
SetI ASST 2 cut(s) 148, 296
SfaNI GCATC 1 cut(s) 122
SinI GGWCC 1 cut(s) 153
SphI GCATGC 1 cut(s) 492
Sse9I AATT 5 cut(s) 86, 264, 287, 655, 663
SsiI CCGC 3 cut(s) 75, 160, 172
SspI AATATT 1 cut(s) 515
SspMI CTAG 2 cut(s) 365, 627
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 2 cut(s) 149, 373
TaaI ACNGT 2 cut(s) 254, 427
TaqI TCGA 2 cut(s) 105, 125
TasI AATT 5 cut(s) 86, 264, 287, 655, 663
TauI GCSGC 2 cut(s) 162, 174
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 2 cut(s) 134, 500
Tru9I TTAA 2 cut(s) 134, 500
TscAI CASTG 4 cut(s) 185, 453, 529, 593
TseI GCWGC 1 cut(s) 477
TspRI CASTG 4 cut(s) 185, 453, 529, 593
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 3 cut(s) 492, 552, 642
XcmI CCANNNNNNNNNTGG 1 cut(s) 380
XspI CTAG 2 cut(s) 365, 627
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.