MD17G1249600.v1.1

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000594
Physical Location & Seq
Reverse (-)
29793637 .. 29802662
9026 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1249600.v1.1.491

Sequence Viewer

Length: 1008 bp
ATGGCCATCCTCTTCTTCTCAGGTGCACATGCAGCGAAAATCACTTTCACAAACAACTGCCCCAACACTGTCTGGCCAGGAACCGTAACCGGTAACCAAAAACCTCAATTATCACTCACCGGGTTCGAACTAGCATCCAAAATTAGCCGGTCAGTGAACGTTCCATCCTCTTGGTCTGGTCGTTTCTGGGCCCGAACCAGATGCGCCACAAATGCCGCTGGAAAATTCAGTTGTGAAACTGCAGACTGTGGCTCTGGCCAGGTTGCATGCAACGGCACAACCCCAGTTCCACCAGCAACTTTAGTAGAAATCACAATCGCAGAAAATGGGGGTCAAGATTTTTACGATGTTAGCCTTGTTGACGGTTTTAACTTGCCCATATTTGTCGCCCCACAAGGCGGCACCGGCGAGTGCATGGCCTCGACTTGCCCTGCGAATGTTAACGCGGCATGCCCGACTGAGTTACAAGTGAAAGCGGCTGATAAGAGTGTCATCAGTTGCAAAAGCGCTTGTGTGGCATACGGCGAGCCGAAGTACTGCTGCACTCCGCCGAATGATCAGCCGAGGACATGTCCTCCCACTGAGTACTCTGAGATCTTTGAGAAGCAGTGCCCTCAAGCTTATAGCTACGCTTATGATGATAAAAACAGCACATTCACCTGTAGTGGCGAACCTGACTACGTCATTATATTCTGCCTAGATGGTATGTCTACTCCCAACCACAATATAAAGAATGTGACAATTATGGAGCTGTGGACCTTTTGGAGTTTGCAAAGCTTCTGGATCATCAATCTGCAAGTGCTTGAAAGGGTTTTGTTGAATTTTTCAGGTCGACTGGCCGAGGGTTCCACTTCACCAACACCGTCCCCAGTTTACAACATGCCCAATTCATCAGCCGATGTGGGATTCAACATGTTTGTACCCAAGTCAGACGGGAAATGGAGCAGAGGAAACTGGACGGGAGGGTGTGTGAGTGAAACCAAATTGTTTTGTGAGAGAGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

336

Amino Acids

36.27

Weight (kDa)

5.2

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 18 - 232 5.4e-77 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccI GTMKAC 2 cut(s) 710, 832
AccII CGCG 1 cut(s) 446
AciI CCGC 5 cut(s) 216, 399, 446, 476, 548
AclI AACGTT 1 cut(s) 159
AclWI GGATC 1 cut(s) 791
AcoI YGGCCR 4 cut(s) 3, 74, 256, 837
AcsI RAATTY 2 cut(s) 224, 820
AfaI GTAC 3 cut(s) 536, 587, 921
AfeI AGCGCT 1 cut(s) 508
AfiI CCNNNNNNNGG 1 cut(s) 398
AflIII ACRYGT 2 cut(s) 569, 912
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 3 cut(s) 806, 820, 910
AjnI CCWGG 2 cut(s) 76, 258
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 4 cut(s) 620, 627, 751, 777
AluI AGCT 4 cut(s) 620, 627, 751, 777
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 993
Alw44I GTGCAC 1 cut(s) 24
AlwI GGATC 1 cut(s) 791
Aor51HI AGCGCT 1 cut(s) 508
AoxI GGCC 6 cut(s) 3, 74, 189, 256, 417, 837
ApaI GGGCCC 1 cut(s) 193
ApaLI GTGCAC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 32, 540
ApoI RAATTY 2 cut(s) 224, 820
AsiGI ACCGGT 1 cut(s) 89
AspLEI GCGC 2 cut(s) 206, 509
AspS9I GGNCC 3 cut(s) 189, 190, 756
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 109, 649, 846
AsuII TTCGAA 1 cut(s) 126
AvaII GGWCC 1 cut(s) 756
BaeGI GKGCMC 3 cut(s) 28, 193, 614
BalI TGGCCA 3 cut(s) 5, 76, 258
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 44, 527
BccI CCATC 3 cut(s) 14, 172, 695
BceAI ACGGC 2 cut(s) 289, 538
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciT130I CCWGG 2 cut(s) 78, 260
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 993
BfaI CTAG 2 cut(s) 131, 698
BfmI CTRYAG 2 cut(s) 240, 661
BfoI RGCGCY 1 cut(s) 510
BglII AGATCT 1 cut(s) 594
BisI GCNGC 6 cut(s) 33, 216, 400, 447, 477, 541
BlsI GCNGC 6 cut(s) 34, 217, 401, 448, 478, 542
BmcAI AGTACT 2 cut(s) 536, 587
Bme1390I CCNGG 3 cut(s) 78, 121, 260
Bme18I GGWCC 1 cut(s) 756
BmgT120I GGNCC 3 cut(s) 189, 190, 756
BmiI GGNNCC 4 cut(s) 82, 191, 403, 847
BmrFI CCNGG 3 cut(s) 78, 121, 260
BmrI ACTGGG 2 cut(s) 278, 863
BmsI GCATC 2 cut(s) 143, 191
BmuI ACTGGG 2 cut(s) 278, 863
Bpu14I TTCGAA 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 563, 840
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 4 cut(s) 559, 589, 954, 984
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse118I RCCGGY 3 cut(s) 89, 147, 404
Bse1I ACTGG 4 cut(s) 284, 840, 869, 959
BseBI CCWGG 2 cut(s) 78, 260
BseDI CCNNGG 2 cut(s) 563, 840
BseGI GGATG 3 cut(s) 6, 134, 164
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMII CTCAG 4 cut(s) 33, 450, 573, 582
BseNI ACTGG 4 cut(s) 284, 840, 869, 959
BseSI GKGCMC 3 cut(s) 28, 193, 614
BseXI GCAGC 2 cut(s) 44, 527
BsgI GTGCAG 1 cut(s) 526
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 6 cut(s) 5, 76, 191, 258, 419, 839
BshNI GGYRCC 1 cut(s) 401
BshTI ACCGGT 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 4 cut(s) 90, 120, 148, 405
BslFI GGGAC 1 cut(s) 850
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 993
BsmFI GGGAC 1 cut(s) 850
BsnI GGCC 6 cut(s) 5, 76, 191, 258, 419, 839
Bsp119I TTCGAA 1 cut(s) 126
Bsp120I GGGCCC 1 cut(s) 189
Bsp1286I GDGCHC 3 cut(s) 28, 193, 614
Bsp143I GATC 3 cut(s) 556, 594, 783
BspACI CCGC 5 cut(s) 216, 399, 446, 476, 548
BspANI GGCC 6 cut(s) 5, 76, 191, 258, 419, 839
BspCNI CTCAG 4 cut(s) 32, 451, 574, 583
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 4 cut(s) 82, 191, 403, 847
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 1 cut(s) 791
BspT104I TTCGAA 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 401
BsrFI RCCGGY 3 cut(s) 89, 147, 404
BsrI ACTGG 4 cut(s) 284, 840, 869, 959
BssAI RCCGGY 3 cut(s) 89, 147, 404
BssECI CCNNGG 2 cut(s) 563, 840
BssMI GATC 3 cut(s) 556, 594, 783
Bst2UI CCWGG 2 cut(s) 78, 260
Bst4CI ACNGT 5 cut(s) 70, 85, 248, 365, 864
Bst6I CTCTTC 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 268, 451, 527
BstDEI CTNAG 4 cut(s) 19, 459, 582, 591
BstEII GGTNACC 1 cut(s) 92
BstF5I GGATG 3 cut(s) 6, 134, 164
BstFNI CGCG 1 cut(s) 446
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 2 cut(s) 206, 509
BstKTI GATC 3 cut(s) 559, 597, 786
BstMAI GTCTC 1 cut(s) 993
BstMBI GATC 3 cut(s) 556, 594, 783
BstMWI GCNNNNNNNGC 4 cut(s) 32, 212, 405, 515
BstNI CCWGG 2 cut(s) 78, 260
BstNSI RCATGY 6 cut(s) 32, 270, 453, 573, 883, 916
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 3 cut(s) 76, 119, 258
BstSFI CTRYAG 2 cut(s) 240, 661
BstSLI GKGCMC 3 cut(s) 28, 193, 614
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 2 cut(s) 44, 527
BstX2I RGATCY 1 cut(s) 594
BstXI CCANNNNNNTGG 1 cut(s) 171
BstYI RGATCY 1 cut(s) 594
BsuRI GGCC 6 cut(s) 5, 76, 191, 258, 419, 839
BtsCI GGATG 3 cut(s) 6, 134, 164
BtsI GCAGTG 1 cut(s) 614
BtsIMutI CAGTG 4 cut(s) 66, 159, 579, 614
Cac8I GCNNGC 3 cut(s) 268, 451, 527
CfoI GCGC 2 cut(s) 206, 509
Cfr10I RCCGGY 3 cut(s) 89, 147, 404
Cfr13I GGNCC 3 cut(s) 189, 190, 756
Csp6I GTAC 3 cut(s) 535, 586, 920
CspAI ACCGGT 1 cut(s) 89
CviAII CATG 7 cut(s) 29, 267, 415, 450, 570, 880, 913
CviQI GTAC 3 cut(s) 535, 586, 920
DdeI CTNAG 4 cut(s) 19, 459, 582, 591
DpnI GATC 3 cut(s) 558, 596, 785
DpnII GATC 3 cut(s) 556, 594, 783
EaeI YGGCCR 4 cut(s) 3, 74, 256, 837
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
EciI GGCGGA 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 756
Eco47III AGCGCT 1 cut(s) 508
Eco91I GGTNACC 1 cut(s) 92
EcoO65I GGTNACC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 76, 258
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 7 cut(s) 32, 270, 418, 453, 573, 883, 916
FaqI GGGAC 1 cut(s) 850
FatI CATG 7 cut(s) 28, 266, 414, 449, 569, 879, 912
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 2 cut(s) 710, 832
Fnu4HI GCNGC 6 cut(s) 33, 216, 400, 447, 477, 541
FokI GGATG 2 cut(s) 121, 151
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 6 cut(s) 33, 216, 400, 447, 477, 541
FspBI CTAG 2 cut(s) 131, 698
GlaI GCGC 2 cut(s) 205, 508
GluI GCNGC 6 cut(s) 33, 216, 400, 447, 477, 541
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 6 cut(s) 5, 76, 191, 258, 419, 839
HapII CCGG 4 cut(s) 90, 120, 148, 405
HhaI GCGC 2 cut(s) 206, 509
Hin1II CATG 7 cut(s) 32, 270, 418, 453, 573, 883, 916
Hin6I GCGC 2 cut(s) 204, 507
HinP1I GCGC 2 cut(s) 204, 507
HincII GTYRAC 3 cut(s) 361, 442, 833
HindII GTYRAC 3 cut(s) 361, 442, 833
HindIII AAGCTT 2 cut(s) 618, 775
HinfI GANTC 1 cut(s) 906
HpaI GTTAAC 1 cut(s) 442
HpaII CCGG 4 cut(s) 90, 120, 148, 405
HphI GGTGA 3 cut(s) 109, 649, 846
Hpy166II GTNNAC 8 cut(s) 26, 157, 361, 442, 711, 756, 833, 874
Hpy188I TCNGA 2 cut(s) 592, 931
Hpy188III TCNNGA 2 cut(s) 335, 781
Hpy8I GTNNAC 8 cut(s) 26, 157, 361, 442, 711, 756, 833, 874
HpyCH4III ACNGT 5 cut(s) 70, 85, 248, 365, 864
HpyCH4IV ACGT 2 cut(s) 159, 681
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 212, 405, 515
HpyF3I CTNAG 4 cut(s) 19, 459, 582, 591
HpySE526I ACGT 2 cut(s) 159, 681
Hsp92II CATG 7 cut(s) 32, 270, 418, 453, 573, 883, 916
HspAI GCGC 2 cut(s) 204, 507
Ksp22I TGATCA 1 cut(s) 556
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 3 cut(s) 556, 594, 783
LmnI GCTCC 2 cut(s) 748, 942
Lsp1109I GCAGC 2 cut(s) 44, 527
LweI GCATC 2 cut(s) 143, 191
MaeI CTAG 2 cut(s) 131, 698
MaeII ACGT 2 cut(s) 159, 681
MaeIII GTNAC 4 cut(s) 85, 92, 462, 736
MalI GATC 3 cut(s) 558, 596, 785
MboI GATC 3 cut(s) 556, 594, 783
MboII GAAGA 2 cut(s) 4, 7
MflI RGATCY 1 cut(s) 594
MhlI GDGCHC 3 cut(s) 28, 193, 614
MlsI TGGCCA 3 cut(s) 5, 76, 258
MluCI AATT 7 cut(s) 107, 141, 224, 741, 820, 886, 983
MluNI TGGCCA 3 cut(s) 5, 76, 258
Mox20I TGGCCA 3 cut(s) 5, 76, 258
MscI TGGCCA 3 cut(s) 5, 76, 258
MseI TTAA 2 cut(s) 369, 441
Msp20I TGGCCA 3 cut(s) 5, 76, 258
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 4 cut(s) 90, 120, 148, 405
MspR9I CCNGG 3 cut(s) 78, 121, 260
MvaI CCWGG 2 cut(s) 78, 260
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 4 cut(s) 32, 212, 405, 515
NciI CCSGG 1 cut(s) 121
NdeII GATC 3 cut(s) 556, 594, 783
NlaIII CATG 7 cut(s) 32, 270, 418, 453, 573, 883, 916
NlaIV GGNNCC 4 cut(s) 82, 191, 403, 847
NmeAIII GCCGAG 2 cut(s) 588, 865
NmuCI GTSAC 1 cut(s) 736
NspI RCATGY 6 cut(s) 32, 270, 453, 573, 883, 916
NspV TTCGAA 1 cut(s) 126
PaeI GCATGC 2 cut(s) 270, 453
PciI ACATGT 2 cut(s) 569, 912
PfeI GAWTC 1 cut(s) 906
PflFI GACNNNGTC 1 cut(s) 680
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 6 cut(s) 34, 217, 401, 448, 478, 542
PscI ACATGT 2 cut(s) 569, 912
Psp1406I AACGTT 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 76, 258
PspEI GGTNACC 1 cut(s) 92
PspGI CCWGG 2 cut(s) 76, 258
PspN4I GGNNCC 4 cut(s) 82, 191, 403, 847
PspOMI GGGCCC 1 cut(s) 189
PspPI GGNCC 3 cut(s) 189, 190, 756
PstI CTGCAG 1 cut(s) 244
PsuI RGATCY 1 cut(s) 594
PsyI GACNNNGTC 1 cut(s) 680
RsaI GTAC 3 cut(s) 536, 587, 921
RsaNI GTAC 3 cut(s) 535, 586, 920
SalI GTCGAC 1 cut(s) 831
SaqAI TTAA 2 cut(s) 369, 441
SatI GCNGC 6 cut(s) 33, 216, 400, 447, 477, 541
Sau3AI GATC 3 cut(s) 556, 594, 783
Sau96I GGNCC 3 cut(s) 189, 190, 756
ScaI AGTACT 2 cut(s) 536, 587
ScrFI CCNGG 3 cut(s) 78, 121, 260
SduI GDGCHC 3 cut(s) 28, 193, 614
SfaNI GCATC 2 cut(s) 143, 191
SfcI CTRYAG 2 cut(s) 240, 661
SfuI TTCGAA 1 cut(s) 126
SgrAI CRCCGGYG 1 cut(s) 404
SinI GGWCC 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 615
SmoI CTYRAG 1 cut(s) 615
SphI GCATGC 2 cut(s) 270, 453
Sse9I AATT 7 cut(s) 107, 141, 224, 741, 820, 886, 983
SsiI CCGC 5 cut(s) 216, 399, 446, 476, 548
SspMI CTAG 2 cut(s) 131, 698
StyD4I CCNGG 3 cut(s) 76, 119, 258
TaaI ACNGT 5 cut(s) 70, 85, 248, 365, 864
TaiI ACGT 2 cut(s) 162, 684
TaqI TCGA 3 cut(s) 126, 422, 832
TasI AATT 7 cut(s) 107, 141, 224, 741, 820, 886, 983
TatI WGTACW 2 cut(s) 534, 585
TauI GCSGC 4 cut(s) 218, 402, 449, 479
TfiI GAWTC 1 cut(s) 906
Tru1I TTAA 2 cut(s) 369, 441
Tru9I TTAA 2 cut(s) 369, 441
TscAI CASTG 4 cut(s) 73, 159, 586, 614
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 2 cut(s) 32, 540
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 1 cut(s) 879
TspRI CASTG 4 cut(s) 73, 159, 586, 614
Tth111I GACNNNGTC 1 cut(s) 680
VneI GTGCAC 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 756
XapI RAATTY 2 cut(s) 224, 820
XceI RCATGY 6 cut(s) 32, 270, 453, 573, 883, 916
XmiI GTMKAC 2 cut(s) 710, 832
XspI CTAG 2 cut(s) 131, 698
ZrmI AGTACT 2 cut(s) 536, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.