pycom09g17210

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000594
Physical Location & Seq
Reverse (-)
17622617 .. 17623324
708 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17210.1

Sequence Viewer

Length: 708 bp
ATGTTGAACATAAATGCAGGTGCACATGCAGCGAAAATCACTTTCACAAATAACTGCCCCAATACATGTGGATCGATCTGGCCAGGAACCCTAACCGGTGACCAAAAACCTCAATTATCACTCACCGGCTTTGAACTAGCATCCAAAGCTAGCCGATCAGTGGATGCTCCATCTCCATGGTCTGGTCGTTTCTGGGCCCGAACCAGATGCTCCACGGACGCCGCTGGAAAATTCACTTGTGAAACTGCAAACTGTGGCTCTGGCAAGGTCGAATGCAACGGGGCAGGCGCAGTTCCACCAGCAACTTTAGTTGAAATCACAATTGCGGAAAACAGGGGTAAAGATTTTTACGATGTTAGCCTTGTTGACGGCTTCAACTTGCCTATGTCTGTTGCACCAAAAGGTGGCACGGGCGAGTGCAAGGCCTCGACTTGCCCTGTCAATGTTAACGCTGCGTGCCCAGCTGAGTTGCAAGTGAAAGCAGCTGATGGGCGTGTCATCAGTTGCAAAAGCGCTTGCGTTGCATTTGGCGATCCAAAGTACTGCTGCCCTCCGCCGAATAATAAGCCAGAGAAATGTCCTCCCACAAAGTACTCTCAGATCTTTGAGCAGCAGTGCCCTCAAGCTTATAGCTACGCTTTTGATGATAAAAACAGCACATTTACCTGCATTGGTGGACCTGACTACGTCATTACATTCTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

236

Amino Acids

24.76

Weight (kDa)

7.32

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 17 - 235 9.8e-77 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 8
Acc36I ACCTGC 2 cut(s) 8, 674
AccB7I CCANNNNNTGG 2 cut(s) 182, 404
AciI CCGC 3 cut(s) 222, 326, 554
AclWI GGATC 2 cut(s) 79, 527
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 1 cut(s) 230
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 2 cut(s) 542, 593
AfeI AGCGCT 1 cut(s) 514
AfiI CCNNNNNNNGG 3 cut(s) 160, 182, 404
AflIII ACRYGT 1 cut(s) 65
AgeI ACCGGT 1 cut(s) 95
AgsI TTSAA 4 cut(s) 7, 134, 314, 376
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 5 cut(s) 149, 464, 485, 626, 633
AluI AGCT 5 cut(s) 149, 464, 485, 626, 633
Alw21I GWGCWC 1 cut(s) 25
Alw44I GTGCAC 1 cut(s) 21
AlwI GGATC 2 cut(s) 79, 527
Aor51HI AGCGCT 1 cut(s) 514
AoxI GGCC 3 cut(s) 80, 195, 423
ApaI GGGCCC 1 cut(s) 199
ApaLI GTGCAC 1 cut(s) 21
ApeKI GCWGC 5 cut(s) 29, 452, 482, 546, 610
ApoI RAATTY 1 cut(s) 230
AsiGI ACCGGT 1 cut(s) 95
AspLEI GCGC 2 cut(s) 290, 515
AspS9I GGNCC 3 cut(s) 195, 196, 677
AsuHPI GGTGA 2 cut(s) 110, 115
AsuNHI GCTAGC 1 cut(s) 149
AvaII GGWCC 1 cut(s) 677
BaeGI GKGCMC 4 cut(s) 25, 199, 461, 620
BalI TGGCCA 1 cut(s) 82
BanII GRGCYC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 5 cut(s) 41, 439, 494, 533, 622
BccI CCATC 2 cut(s) 178, 482
BceAI ACGGC 1 cut(s) 385
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciT130I CCWGG 1 cut(s) 84
BfaI CTAG 2 cut(s) 137, 150
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 2 cut(s) 8, 674
BglII AGATCT 1 cut(s) 600
BisI GCNGC 6 cut(s) 30, 222, 453, 483, 547, 611
BlsI GCNGC 6 cut(s) 31, 223, 454, 484, 548, 612
BmcAI AGTACT 2 cut(s) 542, 593
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 677
BmgT120I GGNCC 3 cut(s) 195, 196, 677
BmiI GGNNCC 2 cut(s) 88, 197
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 3 cut(s) 149, 154, 197
BmtI GCTAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 606
Bsa29I ATCGAT 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 176, 213
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 182, 404
Bse118I RCCGGY 2 cut(s) 95, 125
BseBI CCWGG 1 cut(s) 84
BseCI ATCGAT 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 176, 213
BseGI GGATG 2 cut(s) 140, 169
BseLI CCNNNNNNNGG 3 cut(s) 160, 182, 404
BseMII CTCAG 2 cut(s) 456, 611
BseSI GKGCMC 4 cut(s) 25, 199, 461, 620
BseXI GCAGC 5 cut(s) 41, 439, 494, 533, 622
BseYI CCCAGC 1 cut(s) 460
BshFI GGCC 3 cut(s) 82, 197, 425
BshTI ACCGGT 1 cut(s) 95
BshVI ATCGAT 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 96, 126
BslI CCNNNNNNNGG 3 cut(s) 160, 182, 404
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 3 cut(s) 82, 197, 425
Bsp120I GGGCCC 1 cut(s) 195
Bsp1286I GDGCHC 4 cut(s) 25, 199, 461, 620
Bsp143I GATC 5 cut(s) 71, 75, 155, 532, 600
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 3 cut(s) 222, 326, 554
BspANI GGCC 3 cut(s) 82, 197, 425
BspCNI CTCAG 2 cut(s) 457, 610
BspDI ATCGAT 1 cut(s) 74
BspLI GGNNCC 2 cut(s) 88, 197
BspMI ACCTGC 2 cut(s) 8, 674
BspOI GCTAGC 1 cut(s) 153
BspPI GGATC 2 cut(s) 79, 527
BsrFI RCCGGY 2 cut(s) 95, 125
BssAI RCCGGY 2 cut(s) 95, 125
BssECI CCNNGG 2 cut(s) 176, 213
BssMI GATC 5 cut(s) 71, 75, 155, 532, 600
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 219
BstC8I GCNNGC 4 cut(s) 151, 286, 457, 517
BstDEI CTNAG 2 cut(s) 465, 597
BstDSI CCRYGG 2 cut(s) 176, 213
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 2 cut(s) 140, 169
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 2 cut(s) 290, 515
BstKTI GATC 5 cut(s) 74, 78, 158, 535, 603
BstMBI GATC 5 cut(s) 71, 75, 155, 532, 600
BstMWI GCNNNNNNNGC 4 cut(s) 29, 146, 461, 521
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 2 cut(s) 29, 69
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 82
BstSLI GKGCMC 4 cut(s) 25, 199, 461, 620
BstV1I GCAGC 5 cut(s) 41, 439, 494, 533, 622
BstX2I RGATCY 1 cut(s) 600
BstXI CCANNNNNNTGG 1 cut(s) 177
BstYI RGATCY 1 cut(s) 600
Bsu15I ATCGAT 1 cut(s) 74
BsuRI GGCC 3 cut(s) 82, 197, 425
BsuTUI ATCGAT 1 cut(s) 74
BtgI CCRYGG 2 cut(s) 176, 213
BtsCI GGATG 2 cut(s) 140, 169
BtsI GCAGTG 1 cut(s) 620
BtsIMutI CAGTG 2 cut(s) 165, 620
BveI ACCTGC 2 cut(s) 8, 674
Cac8I GCNNGC 4 cut(s) 151, 286, 457, 517
CfoI GCGC 2 cut(s) 290, 515
Cfr10I RCCGGY 2 cut(s) 95, 125
Cfr13I GGNCC 3 cut(s) 195, 196, 677
ClaI ATCGAT 1 cut(s) 74
CseI GACGC 1 cut(s) 227
Csp6I GTAC 2 cut(s) 541, 592
CspAI ACCGGT 1 cut(s) 95
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 3 cut(s) 26, 66, 177
CviQI GTAC 2 cut(s) 541, 592
DdeI CTNAG 2 cut(s) 465, 597
DpnI GATC 5 cut(s) 73, 77, 157, 534, 602
DpnII GATC 5 cut(s) 71, 75, 155, 532, 600
EaeI YGGCCR 1 cut(s) 80
EciI GGCGGA 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 176
Eco147I AGGCCT 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 677
Eco47III AGCGCT 1 cut(s) 514
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 3 cut(s) 29, 69, 180
FaiI YATR 7 cut(s) 11, 27, 67, 178, 386, 630, 706
FatI CATG 3 cut(s) 25, 65, 176
Fnu4HI GCNGC 6 cut(s) 30, 222, 453, 483, 547, 611
FokI GGATG 2 cut(s) 127, 176
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 6 cut(s) 30, 222, 453, 483, 547, 611
FspBI CTAG 2 cut(s) 137, 150
GlaI GCGC 2 cut(s) 289, 514
GluI GCNGC 6 cut(s) 30, 222, 453, 483, 547, 611
GsaI CCCAGC 1 cut(s) 464
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 3 cut(s) 82, 197, 425
HapII CCGG 2 cut(s) 96, 126
HgaI GACGC 1 cut(s) 227
HhaI GCGC 2 cut(s) 290, 515
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 3 cut(s) 29, 69, 180
Hin6I GCGC 2 cut(s) 288, 513
HinP1I GCGC 2 cut(s) 288, 513
HincII GTYRAC 2 cut(s) 367, 448
HindII GTYRAC 2 cut(s) 367, 448
HindIII AAGCTT 1 cut(s) 624
HpaI GTTAAC 1 cut(s) 448
HpaII CCGG 2 cut(s) 96, 126
HphI GGTGA 2 cut(s) 110, 115
Hpy166II GTNNAC 4 cut(s) 23, 367, 448, 677
Hpy188I TCNGA 1 cut(s) 600
Hpy8I GTNNAC 4 cut(s) 23, 367, 448, 677
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 687
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 146, 461, 521
HpyF3I CTNAG 2 cut(s) 465, 597
HpySE526I ACGT 1 cut(s) 687
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 3 cut(s) 29, 69, 180
HspAI GCGC 2 cut(s) 288, 513
KspAI GTTAAC 1 cut(s) 448
Kzo9I GATC 5 cut(s) 71, 75, 155, 532, 600
LmnI GCTCC 2 cut(s) 172, 215
Lsp1109I GCAGC 5 cut(s) 41, 439, 494, 533, 622
LweI GCATC 3 cut(s) 149, 154, 197
MaeI CTAG 2 cut(s) 137, 150
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 1 cut(s) 98
MalI GATC 5 cut(s) 73, 77, 157, 534, 602
MboI GATC 5 cut(s) 71, 75, 155, 532, 600
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 4 cut(s) 25, 199, 461, 620
MlsI TGGCCA 1 cut(s) 82
MluCI AATT 3 cut(s) 113, 230, 321
MluNI TGGCCA 1 cut(s) 82
MnlI CCTC 5 cut(s) 120, 436, 561, 591, 630
Mox20I TGGCCA 1 cut(s) 82
MscI TGGCCA 1 cut(s) 82
MseI TTAA 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 175
Msp20I TGGCCA 1 cut(s) 82
MspA1I CMGCKG 3 cut(s) 224, 464, 485
MspI CCGG 2 cut(s) 96, 126
MspR9I CCNGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 4 cut(s) 29, 146, 461, 521
NcoI CCATGG 1 cut(s) 176
NdeII GATC 5 cut(s) 71, 75, 155, 532, 600
NheI GCTAGC 1 cut(s) 149
NlaIII CATG 3 cut(s) 29, 69, 180
NlaIV GGNNCC 2 cut(s) 88, 197
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 2 cut(s) 29, 69
PaqCI CACCTGC 1 cut(s) 8
PceI AGGCCT 1 cut(s) 425
PciI ACATGT 1 cut(s) 65
PctI GAATGC 1 cut(s) 278
PflFI GACNNNGTC 1 cut(s) 686
PflMI CCANNNNNTGG 2 cut(s) 182, 404
PinAI ACCGGT 1 cut(s) 95
PkrI GCNGC 6 cut(s) 31, 223, 454, 484, 548, 612
PscI ACATGT 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 82
PspEI GGTNACC 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 460
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 88, 197
PspOMI GGGCCC 1 cut(s) 195
PspPI GGNCC 3 cut(s) 195, 196, 677
PsuI RGATCY 1 cut(s) 600
PsyI GACNNNGTC 1 cut(s) 686
PvuII CAGCTG 2 cut(s) 464, 485
RsaI GTAC 2 cut(s) 542, 593
RsaNI GTAC 2 cut(s) 541, 592
RseI CAYNNNNRTG 1 cut(s) 175
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 6 cut(s) 30, 222, 453, 483, 547, 611
Sau3AI GATC 5 cut(s) 71, 75, 155, 532, 600
Sau96I GGNCC 3 cut(s) 195, 196, 677
ScaI AGTACT 2 cut(s) 542, 593
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 4 cut(s) 25, 199, 461, 620
SfaNI GCATC 3 cut(s) 149, 154, 197
SinI GGWCC 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 621
SmoI CTYRAG 1 cut(s) 621
Sse9I AATT 3 cut(s) 113, 230, 321
SseBI AGGCCT 1 cut(s) 425
SsiI CCGC 3 cut(s) 222, 326, 554
SspMI CTAG 2 cut(s) 137, 150
StuI AGGCCT 1 cut(s) 425
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 1 cut(s) 690
TaqI TCGA 3 cut(s) 74, 270, 428
TasI AATT 3 cut(s) 113, 230, 321
TatI WGTACW 2 cut(s) 540, 591
TauI GCSGC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 2 cut(s) 165, 620
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 5 cut(s) 29, 452, 482, 546, 610
Tsp45I GTSAC 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 2 cut(s) 165, 620
Tth111I GACNNNGTC 1 cut(s) 686
Van91I CCANNNNNTGG 2 cut(s) 182, 404
VneI GTGCAC 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 677
XapI RAATTY 1 cut(s) 230
XceI RCATGY 2 cut(s) 29, 69
XspI CTAG 2 cut(s) 137, 150
ZrmI AGTACT 2 cut(s) 542, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.