Rw1G024760

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000594
Physical Location & Seq
Forward (+)
51147192 .. 51149608
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024760.1

Sequence Viewer

Length: 792 bp
ATGCCATGTAAGTATATAAATATTTATTTTCAATTCCATATAATATATCTTAATTTTCTCATAATGTTGCTAGAACTTGATACTAATTATTTTGATTTTGGTTTCCAAGCAGGTGCACATGCAGCTACAATCACCTTCACCAACAACTGCCCCTACACCGTATGGCCAGGATCCCTCACCTCCGACCAACAACCCCAACTATCCACCACCGGCTTCGAGCTAGCACAGGGAGCCAAAAACGAGGTCACCACTCCCGTTCCATGGAAAGGACGCTTCTGGGCCCGAACCGGATGCTCCACCGCTGCCGACGGAAAGTTCTCCTGCGCCACAGCTGACTGCGCCTCCGGCCAGGTCACATGCAACGGCAACGGCGCAGTCCCACCGGCAACTCTAGTTGAAATCAACATCGTAGCTGACGGCGGTCAGGACTTCTACGACGTCAGCCTGGTCGACGGCTTCAACGTGCCCATGTCCGTGGCCCCTCAGGGTGGAACCGGCGACTGCCAGACCTCTACATGCCCGGCCGACGTGAACGCCGCCTGTCCGGCGGAGCTGCAACTGAAGGCCGCCGACGGGAGTGTGATCGCCTGCAAGAGCGCGTGTACGGCGTTCAACGAGCCACAGTACTGTTGCACACCTCCCAATGACACTCCCGAAACCTGTCCTCCCACAAACTACTCTCAGATCTTTGAGAACCAGTGCCCTCAGGCTTATAGCTACGCTTATGATGACAAGAACAGCTTGTTTACATGCTTCGGTGGACCTAACTACGCCATTACATTCTGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

263

Amino Acids

28.21

Weight (kDa)

4.16

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 48 - 263 1.7e-78 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 101
AatII GACGTC 1 cut(s) 441
Acc36I ACCTGC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 450
AccII CGCG 1 cut(s) 599
AciI CCGC 5 cut(s) 300, 420, 537, 548, 567
AclWI GGATC 2 cut(s) 165, 178
AcoI YGGCCR 3 cut(s) 164, 346, 522
AcuI CTGAAG 1 cut(s) 581
AcyI GRCGYC 1 cut(s) 438
AfaI GTAC 2 cut(s) 604, 626
AfiI CCNNNNNNNGG 4 cut(s) 261, 266, 488, 573
AgsI TTSAA 4 cut(s) 32, 398, 460, 613
AjiI CACGTC 1 cut(s) 529
AjnI CCWGG 3 cut(s) 166, 348, 444
AluBI AGCT 7 cut(s) 125, 220, 332, 413, 553, 717, 741
AluI AGCT 7 cut(s) 125, 220, 332, 413, 553, 717, 741
Alw21I GWGCWC 1 cut(s) 118
Alw44I GTGCAC 1 cut(s) 114
AlwI GGATC 2 cut(s) 165, 178
AoxI GGCC 6 cut(s) 164, 279, 346, 477, 522, 564
ApaI GGGCCC 1 cut(s) 283
ApaLI GTGCAC 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 122, 302, 553
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
AspLEI GCGC 4 cut(s) 326, 341, 374, 599
AspS9I GGNCC 4 cut(s) 279, 280, 478, 761
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 4 cut(s) 124, 130, 169, 238
AsuNHI GCTAGC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 761
AxyI CCTNAGG 2 cut(s) 483, 705
BaeGI GKGCMC 4 cut(s) 118, 283, 468, 704
BalI TGGCCA 1 cut(s) 166
BamHI GGATCC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 134, 289, 540
BceAI ACGGC 5 cut(s) 379, 385, 433, 469, 621
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BciT130I CCWGG 3 cut(s) 168, 350, 446
BcnI CCSGG 1 cut(s) 521
BfaI CTAG 3 cut(s) 71, 221, 392
BfuAI ACCTGC 1 cut(s) 101
BglI GCCNNNNNGGC 1 cut(s) 545
BglII AGATCT 1 cut(s) 684
BisI GCNGC 5 cut(s) 123, 303, 537, 554, 567
BlsI GCNGC 5 cut(s) 124, 304, 538, 555, 568
BmcAI AGTACT 1 cut(s) 626
Bme1390I CCNGG 4 cut(s) 168, 350, 446, 521
Bme18I GGWCC 1 cut(s) 761
BmgBI CACGTC 1 cut(s) 529
BmgT120I GGNCC 4 cut(s) 279, 280, 478, 761
BmiI GGNNCC 5 cut(s) 172, 232, 281, 480, 493
BmrFI CCNGG 4 cut(s) 168, 350, 446, 521
BmsI GCATC 1 cut(s) 281
BmtI GCTAGC 1 cut(s) 224
BoxI GACNNNNGTC 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 260, 474
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 4 cut(s) 326, 356, 649, 679
Bsc4I CCNNNNNNNGG 4 cut(s) 261, 266, 488, 573
Bse118I RCCGGY 3 cut(s) 209, 382, 494
Bse1I ACTGG 1 cut(s) 697
Bse21I CCTNAGG 2 cut(s) 483, 705
BseBI CCWGG 3 cut(s) 168, 350, 446
BseDI CCNNGG 2 cut(s) 260, 474
BseGI GGATG 1 cut(s) 296
BseLI CCNNNNNNNGG 4 cut(s) 261, 266, 488, 573
BseMII CTCAG 3 cut(s) 497, 695, 719
BseNI ACTGG 1 cut(s) 697
BseSI GKGCMC 4 cut(s) 118, 283, 468, 704
BseX3I CGGCCG 1 cut(s) 522
BseXI GCAGC 3 cut(s) 134, 289, 540
Bsh1236I CGCG 1 cut(s) 599
Bsh1285I CGRYCG 1 cut(s) 525
BshFI GGCC 6 cut(s) 166, 281, 348, 479, 524, 566
BsiEI CGRYCG 1 cut(s) 525
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 7 cut(s) 210, 288, 345, 383, 495, 521, 545
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 4 cut(s) 261, 266, 488, 573
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 6 cut(s) 166, 281, 348, 479, 524, 566
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 4 cut(s) 118, 283, 468, 704
Bsp143I GATC 3 cut(s) 170, 582, 684
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 5 cut(s) 300, 420, 537, 548, 567
BspANI GGCC 6 cut(s) 166, 281, 348, 479, 524, 566
BspCNI CTCAG 3 cut(s) 496, 694, 718
BspFNI CGCG 1 cut(s) 599
BspLI GGNNCC 5 cut(s) 172, 232, 281, 480, 493
BspMI ACCTGC 1 cut(s) 101
BspOI GCTAGC 1 cut(s) 224
BspPI GGATC 2 cut(s) 165, 178
BsrFI RCCGGY 3 cut(s) 209, 382, 494
BsrI ACTGG 1 cut(s) 697
BssAI RCCGGY 3 cut(s) 209, 382, 494
BssECI CCNNGG 2 cut(s) 260, 474
BssMI GATC 3 cut(s) 170, 582, 684
BssNI GRCGYC 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 260
Bst2UI CCWGG 3 cut(s) 168, 350, 446
Bst4CI ACNGT 3 cut(s) 160, 624, 629
BstACI GRCGYC 1 cut(s) 438
BstC8I GCNNGC 2 cut(s) 222, 589
BstDEI CTNAG 3 cut(s) 483, 681, 705
BstDSI CCRYGG 2 cut(s) 260, 474
BstEII GGTNACC 1 cut(s) 244
BstF5I GGATG 1 cut(s) 296
BstFNI CGCG 1 cut(s) 599
BstHHI GCGC 4 cut(s) 326, 341, 374, 599
BstKTI GATC 3 cut(s) 173, 585, 687
BstMBI GATC 3 cut(s) 170, 582, 684
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 6 cut(s) 122, 230, 338, 345, 545, 605
BstNI CCWGG 3 cut(s) 168, 350, 446
BstNSI RCATGY 4 cut(s) 122, 360, 519, 753
BstPAI GACNNNNGTC 1 cut(s) 420
BstPI GGTNACC 1 cut(s) 244
BstSCI CCNGG 4 cut(s) 166, 348, 444, 519
BstSLI GKGCMC 4 cut(s) 118, 283, 468, 704
BstUI CGCG 1 cut(s) 599
BstV1I GCAGC 3 cut(s) 134, 289, 540
BstX2I RGATCY 2 cut(s) 170, 684
BstXI CCANNNNNNTGG 1 cut(s) 475
BstYI RGATCY 2 cut(s) 170, 684
BstZI CGGCCG 1 cut(s) 522
Bsu36I CCTNAGG 2 cut(s) 483, 705
BsuRI GGCC 6 cut(s) 166, 281, 348, 479, 524, 566
BtgI CCRYGG 2 cut(s) 260, 474
BtrI CACGTC 1 cut(s) 529
BtsCI GGATG 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 704
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 222, 589
CfoI GCGC 4 cut(s) 326, 341, 374, 599
Cfr10I RCCGGY 3 cut(s) 209, 382, 494
Cfr13I GGNCC 4 cut(s) 279, 280, 478, 761
CseI GACGC 1 cut(s) 279
Csp6I GTAC 2 cut(s) 603, 625
CviAII CATG 8 cut(s) 6, 119, 261, 357, 469, 516, 750, 789
CviQI GTAC 2 cut(s) 603, 625
DdeI CTNAG 3 cut(s) 483, 681, 705
DpnI GATC 3 cut(s) 172, 584, 686
DpnII GATC 3 cut(s) 170, 582, 684
EaeI YGGCCR 3 cut(s) 164, 346, 522
EagI CGGCCG 1 cut(s) 522
EciI GGCGGA 1 cut(s) 563
EclXI CGGCCG 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 761
Eco52I CGGCCG 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 581
Eco81I CCTNAGG 2 cut(s) 483, 705
Eco91I GGTNACC 1 cut(s) 244
EcoO65I GGTNACC 1 cut(s) 244
EcoRII CCWGG 3 cut(s) 166, 348, 444
EcoT14I CCWWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 8 cut(s) 9, 122, 264, 360, 472, 519, 753, 792
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FaqI GGGAC 1 cut(s) 362
FatI CATG 8 cut(s) 5, 118, 260, 356, 468, 515, 749, 788
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 5 cut(s) 123, 303, 537, 554, 567
FokI GGATG 1 cut(s) 303
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 5 cut(s) 123, 303, 537, 554, 567
FspBI CTAG 3 cut(s) 71, 221, 392
GlaI GCGC 4 cut(s) 325, 340, 373, 598
GluI GCNGC 5 cut(s) 123, 303, 537, 554, 567
HaeIII GGCC 6 cut(s) 166, 281, 348, 479, 524, 566
HapII CCGG 7 cut(s) 210, 288, 345, 383, 495, 521, 545
HgaI GACGC 1 cut(s) 279
HhaI GCGC 4 cut(s) 326, 341, 374, 599
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 8 cut(s) 9, 122, 264, 360, 472, 519, 753, 792
Hin6I GCGC 4 cut(s) 324, 339, 372, 597
HinP1I GCGC 4 cut(s) 324, 339, 372, 597
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HpaII CCGG 7 cut(s) 210, 288, 345, 383, 495, 521, 545
HphI GGTGA 4 cut(s) 124, 130, 169, 238
Hpy166II GTNNAC 6 cut(s) 116, 451, 532, 603, 747, 761
Hpy188I TCNGA 2 cut(s) 184, 684
Hpy188III TCNNGA 2 cut(s) 425, 653
Hpy8I GTNNAC 6 cut(s) 116, 451, 532, 603, 747, 761
Hpy99I CGWCG 5 cut(s) 311, 440, 455, 530, 575
HpyAV CCTTC 2 cut(s) 145, 556
HpyCH4III ACNGT 3 cut(s) 160, 624, 629
HpyCH4IV ACGT 3 cut(s) 438, 462, 528
HpyCH4V TGCA 6 cut(s) 116, 122, 360, 556, 591, 633
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 230, 338, 345, 545, 605
HpyF3I CTNAG 3 cut(s) 483, 681, 705
HpySE526I ACGT 3 cut(s) 438, 462, 528
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 8 cut(s) 9, 122, 264, 360, 472, 519, 753, 792
HspAI GCGC 4 cut(s) 324, 339, 372, 597
Kzo9I GATC 3 cut(s) 170, 582, 684
LmnI GCTCC 3 cut(s) 230, 299, 550
Lsp1109I GCAGC 3 cut(s) 134, 289, 540
LweI GCATC 1 cut(s) 281
MaeI CTAG 3 cut(s) 71, 221, 392
MaeII ACGT 3 cut(s) 438, 462, 528
MaeIII GTNAC 2 cut(s) 244, 352
MalI GATC 3 cut(s) 172, 584, 686
MboI GATC 3 cut(s) 170, 582, 684
MflI RGATCY 2 cut(s) 170, 684
MhlI GDGCHC 4 cut(s) 118, 283, 468, 704
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 3 cut(s) 32, 52, 85
MluNI TGGCCA 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 9 cut(s) 185, 190, 235, 352, 492, 520, 648, 675, 714
Mox20I TGGCCA 1 cut(s) 166
MscI TGGCCA 1 cut(s) 166
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 166
MspA1I CMGCKG 2 cut(s) 302, 332
MspI CCGG 7 cut(s) 210, 288, 345, 383, 495, 521, 545
MspR9I CCNGG 4 cut(s) 168, 350, 446, 521
MvaI CCWGG 3 cut(s) 168, 350, 446
MvnI CGCG 1 cut(s) 599
MwoI GCNNNNNNNGC 6 cut(s) 122, 230, 338, 345, 545, 605
NciI CCSGG 1 cut(s) 521
NcoI CCATGG 1 cut(s) 260
NdeII GATC 3 cut(s) 170, 582, 684
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 8 cut(s) 9, 122, 264, 360, 472, 519, 753, 792
NlaIV GGNNCC 5 cut(s) 172, 232, 281, 480, 493
NmuCI GTSAC 2 cut(s) 244, 352
NspI RCATGY 4 cut(s) 122, 360, 519, 753
PaqCI CACCTGC 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PkrI GCNGC 5 cut(s) 124, 304, 538, 555, 568
PshAI GACNNNNGTC 1 cut(s) 420
Psp6I CCWGG 3 cut(s) 166, 348, 444
PspEI GGTNACC 1 cut(s) 244
PspGI CCWGG 3 cut(s) 166, 348, 444
PspN4I GGNNCC 5 cut(s) 172, 232, 281, 480, 493
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 4 cut(s) 279, 280, 478, 761
PsuI RGATCY 2 cut(s) 170, 684
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 2 cut(s) 604, 626
RsaNI GTAC 2 cut(s) 603, 625
RseI CAYNNNNRTG 1 cut(s) 473
SalI GTCGAC 1 cut(s) 449
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 5 cut(s) 123, 303, 537, 554, 567
Sau3AI GATC 3 cut(s) 170, 582, 684
Sau96I GGNCC 4 cut(s) 279, 280, 478, 761
ScaI AGTACT 1 cut(s) 626
ScrFI CCNGG 4 cut(s) 168, 350, 446, 521
SduI GDGCHC 4 cut(s) 118, 283, 468, 704
SfaNI GCATC 1 cut(s) 281
SinI GGWCC 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 3 cut(s) 32, 52, 85
SsiI CCGC 5 cut(s) 300, 420, 537, 548, 567
SspI AATATT 1 cut(s) 22
SspMI CTAG 3 cut(s) 71, 221, 392
StyD4I CCNGG 4 cut(s) 166, 348, 444, 519
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 3 cut(s) 160, 624, 629
TaiI ACGT 3 cut(s) 441, 465, 531
TaqI TCGA 2 cut(s) 216, 450
TasI AATT 3 cut(s) 32, 52, 85
TatI WGTACW 1 cut(s) 624
TauI GCSGC 2 cut(s) 539, 569
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 704
TseFI GTSAC 2 cut(s) 244, 352
TseI GCWGC 3 cut(s) 122, 302, 553
Tsp45I GTSAC 2 cut(s) 244, 352
TspGWI ACGGA 2 cut(s) 324, 463
TspRI CASTG 1 cut(s) 704
VneI GTGCAC 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 761
XceI RCATGY 4 cut(s) 122, 360, 519, 753
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 3 cut(s) 71, 221, 392
ZraI GACGTC 1 cut(s) 439
ZrmI AGTACT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.