Prupe.7G051100_v2.0.a1

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000594
Physical Location & Seq
Reverse (-)
8880989 .. 8882378
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G051100.1

Sequence Viewer

Length: 513 bp
ATGATGAAGACCCTAGTAGTAGTCCTCAGCCTCAGCTTAACCATCCTTTCCTTTGGAGGTGCACATGCAGCGACAATGTCTTTCAAAAACAATTGCCCCTACACGGTCTGGCCAGTAACCCTAACCTCCGATGGAAAACCTCAATTATCACCCACAGGGTTCGAGTTAGCATCCCAAGCTAGCTTCCAGCTAGACACTCCAGTGCCATGGAGCGGCCGCTTCTGGGCCCGAACTGGATGCTCCACGAACGCCTCGGGAAATTTCGTCTGCGCCACCGCAGACTGTGCCTCTGGTCAGGTCACGTGCAACGGTACCGATGGCTTTCCGCCGGCAACTTTAGCGGAATTCAGTATTCCAGCAGGCGGAGGACAAGATTTCTACGATGTTAGTCTTGTTGATGGCTTCAACTTGCCCATGTCTGTGACTCCACAAGGCGGTACCGGCACCTGCAAGACGAGTAGTTGCGCGGCGAACGTGAACGCAGTTTGTCCGAGTGTGCGCTGCAAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

171

Amino Acids

17.51

Weight (kDa)

5.6

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 455
Acc36I ACCTGC 1 cut(s) 455
Acc65I GGTACC 2 cut(s) 311, 437
AccB1I GGYRCC 3 cut(s) 311, 437, 443
AccBSI CCGCTC 1 cut(s) 213
AccII CGCG 1 cut(s) 467
AciI CCGC 8 cut(s) 213, 217, 276, 326, 341, 363, 435, 467
AcoI YGGCCR 2 cut(s) 110, 214
AcsI RAATTY 2 cut(s) 259, 344
AcvI CACGTG 1 cut(s) 303
AfaI GTAC 2 cut(s) 313, 439
AfiI CCNNNNNNNGG 5 cut(s) 103, 212, 223, 362, 434
AgsI TTSAA 2 cut(s) 85, 406
AleI CACNNNNGTG 1 cut(s) 200
AluBI AGCT 4 cut(s) 36, 179, 183, 190
AluI AGCT 4 cut(s) 36, 179, 183, 190
Alw21I GWGCWC 1 cut(s) 64
Alw44I GTGCAC 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 3 cut(s) 110, 214, 225
ApaI GGGCCC 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 68, 501
ApoI RAATTY 2 cut(s) 259, 344
Asp718I GGTACC 2 cut(s) 311, 437
AspLEI GCGC 3 cut(s) 272, 467, 501
AspS9I GGNCC 2 cut(s) 225, 226
AsuHPI GGTGA 1 cut(s) 141
AsuNHI GCTAGC 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 253
BaeGI GKGCMC 2 cut(s) 64, 229
BalI TGGCCA 1 cut(s) 112
BanI GGYRCC 3 cut(s) 311, 437, 443
BanII GRGCYC 1 cut(s) 229
BbrPI CACGTG 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 64
BbvCI CCTCAGC 2 cut(s) 26, 32
BbvI GCAGC 2 cut(s) 80, 488
BccI CCATC 4 cut(s) 50, 125, 311, 392
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BfaI CTAG 3 cut(s) 14, 180, 191
BfuAI ACCTGC 1 cut(s) 455
BisI GCNGC 5 cut(s) 69, 214, 217, 468, 502
BlsI GCNGC 5 cut(s) 70, 215, 218, 469, 503
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 225, 226
BmiI GGNNCC 4 cut(s) 227, 313, 439, 445
BmsI GCATC 2 cut(s) 179, 227
BmtI GCTAGC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 2 cut(s) 26, 32
BsaAI YACGTR 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 206, 252
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 212, 223, 362, 434
Bse118I RCCGGY 2 cut(s) 328, 440
Bse1I ACTGG 3 cut(s) 113, 200, 238
BseDI CCNNGG 2 cut(s) 206, 252
BseGI GGATG 3 cut(s) 42, 170, 242
BseLI CCNNNNNNNGG 5 cut(s) 103, 212, 223, 362, 434
BseMII CTCAG 2 cut(s) 40, 46
BseNI ACTGG 3 cut(s) 113, 200, 238
BseSI GKGCMC 2 cut(s) 64, 229
BseX3I CGGCCG 1 cut(s) 214
BseXI GCAGC 2 cut(s) 80, 488
Bsh1236I CGCG 1 cut(s) 467
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 3 cut(s) 112, 216, 227
BshNI GGYRCC 3 cut(s) 311, 437, 443
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 2 cut(s) 329, 441
BslI CCNNNNNNNGG 5 cut(s) 103, 212, 223, 362, 434
BsnI GGCC 3 cut(s) 112, 216, 227
BsoBI CYCGRG 1 cut(s) 253
Bsp120I GGGCCC 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 64, 229
Bsp19I CCATGG 1 cut(s) 206
BspACI CCGC 8 cut(s) 213, 217, 276, 326, 341, 363, 435, 467
BspANI GGCC 3 cut(s) 112, 216, 227
BspCNI CTCAG 2 cut(s) 39, 45
BspFNI CGCG 1 cut(s) 467
BspLI GGNNCC 4 cut(s) 227, 313, 439, 445
BspMI ACCTGC 1 cut(s) 455
BspOI GCTAGC 1 cut(s) 183
BspT107I GGYRCC 3 cut(s) 311, 437, 443
BsrBI CCGCTC 1 cut(s) 213
BsrFI RCCGGY 2 cut(s) 328, 440
BsrI ACTGG 3 cut(s) 113, 200, 238
BssAI RCCGGY 2 cut(s) 328, 440
BssECI CCNNGG 2 cut(s) 206, 252
BssT1I CCWWGG 1 cut(s) 206
Bst4CI ACNGT 3 cut(s) 106, 284, 311
BstAPI GCANNNNNTGC 1 cut(s) 284
BstBAI YACGTR 1 cut(s) 303
BstC8I GCNNGC 3 cut(s) 181, 330, 361
BstDEI CTNAG 2 cut(s) 26, 32
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 3 cut(s) 42, 170, 242
BstFNI CGCG 1 cut(s) 467
BstHHI GCGC 3 cut(s) 272, 467, 501
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 5 cut(s) 68, 176, 284, 338, 441
BstNSI RCATGY 1 cut(s) 68
BstSLI GKGCMC 2 cut(s) 64, 229
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 2 cut(s) 80, 488
BstV2I GAAGAC 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 207
BstZI CGGCCG 1 cut(s) 214
BsuRI GGCC 3 cut(s) 112, 216, 227
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 3 cut(s) 42, 170, 242
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 3 cut(s) 181, 330, 361
CciNI GCGGCCGC 1 cut(s) 214
CfoI GCGC 3 cut(s) 272, 467, 501
Cfr10I RCCGGY 2 cut(s) 328, 440
Cfr13I GGNCC 2 cut(s) 225, 226
Csp6I GTAC 2 cut(s) 312, 438
CviAII CATG 3 cut(s) 65, 207, 415
CviQI GTAC 2 cut(s) 312, 438
DdeI CTNAG 2 cut(s) 26, 32
EaeI YGGCCR 2 cut(s) 110, 214
EagI CGGCCG 1 cut(s) 214
EciI GGCGGA 2 cut(s) 315, 378
EclXI CGGCCG 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 229
Eco52I CGGCCG 1 cut(s) 214
Eco72I CACGTG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 3 cut(s) 68, 210, 418
FaiI YATR 3 cut(s) 66, 208, 416
FatI CATG 3 cut(s) 64, 206, 414
Fnu4HI GCNGC 5 cut(s) 69, 214, 217, 468, 502
FokI GGATG 3 cut(s) 29, 157, 249
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 5 cut(s) 69, 214, 217, 468, 502
FspBI CTAG 3 cut(s) 14, 180, 191
GlaI GCGC 3 cut(s) 271, 466, 500
GluI GCNGC 5 cut(s) 69, 214, 217, 468, 502
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 3 cut(s) 112, 216, 227
HapII CCGG 2 cut(s) 329, 441
HhaI GCGC 3 cut(s) 272, 467, 501
Hin1II CATG 3 cut(s) 68, 210, 418
Hin6I GCGC 3 cut(s) 270, 465, 499
HinP1I GCGC 3 cut(s) 270, 465, 499
HinfI GANTC 1 cut(s) 424
HpaII CCGG 2 cut(s) 329, 441
HphI GGTGA 1 cut(s) 141
Hpy166II GTNNAC 2 cut(s) 62, 478
Hpy188I TCNGA 2 cut(s) 130, 492
Hpy188III TCNNGA 1 cut(s) 255
Hpy8I GTNNAC 2 cut(s) 62, 478
HpyCH4III ACNGT 3 cut(s) 106, 284, 311
HpyCH4IV ACGT 2 cut(s) 302, 474
HpyCH4V TGCA 5 cut(s) 62, 68, 306, 450, 504
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 176, 284, 338, 441
HpyF3I CTNAG 2 cut(s) 26, 32
HpySE526I ACGT 2 cut(s) 302, 474
Hsp92II CATG 3 cut(s) 68, 210, 418
HspAI GCGC 3 cut(s) 270, 465, 499
KpnI GGTACC 2 cut(s) 315, 441
KroI GCCGGC 1 cut(s) 328
KroNI GCCGGC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 210, 245
Lsp1109I GCAGC 2 cut(s) 80, 488
LweI GCATC 2 cut(s) 179, 227
MaeI CTAG 3 cut(s) 14, 180, 191
MaeII ACGT 2 cut(s) 302, 474
MaeIII GTNAC 3 cut(s) 115, 298, 421
MbiI CCGCTC 1 cut(s) 213
MboII GAAGA 1 cut(s) 19
MfeI CAATTG 1 cut(s) 91
MhlI GDGCHC 2 cut(s) 64, 229
MlsI TGGCCA 1 cut(s) 112
MluCI AATT 4 cut(s) 91, 143, 259, 344
MluNI TGGCCA 1 cut(s) 112
MlyI GAGTC 1 cut(s) 418
MnlI CCTC 8 cut(s) 35, 41, 50, 136, 150, 262, 298, 359
Mox20I TGGCCA 1 cut(s) 112
MroNI GCCGGC 1 cut(s) 328
MscI TGGCCA 1 cut(s) 112
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 2 cut(s) 200, 419
Msp20I TGGCCA 1 cut(s) 112
MspI CCGG 2 cut(s) 329, 441
MunI CAATTG 1 cut(s) 91
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 5 cut(s) 68, 176, 284, 338, 441
NaeI GCCGGC 1 cut(s) 330
NcoI CCATGG 1 cut(s) 206
NgoMIV GCCGGC 1 cut(s) 328
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 68, 210, 418
NlaIV GGNNCC 4 cut(s) 227, 313, 439, 445
NmuCI GTSAC 2 cut(s) 298, 421
NotI GCGGCCGC 1 cut(s) 214
NspI RCATGY 1 cut(s) 68
OliI CACNNNNGTG 1 cut(s) 200
PaqCI CACCTGC 1 cut(s) 455
PdiI GCCGGC 1 cut(s) 330
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 5 cut(s) 70, 215, 218, 469, 503
PleI GAGTC 1 cut(s) 418
PmaCI CACGTG 1 cut(s) 303
PmlI CACGTG 1 cut(s) 303
PpsI GAGTC 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 303
PspCI CACGTG 1 cut(s) 303
PspN4I GGNNCC 4 cut(s) 227, 313, 439, 445
PspOMI GGGCCC 1 cut(s) 225
PspPI GGNCC 2 cut(s) 225, 226
PsyI GACNNNGTC 1 cut(s) 76
RsaI GTAC 2 cut(s) 313, 439
RsaNI GTAC 2 cut(s) 312, 438
RseI CAYNNNNRTG 2 cut(s) 200, 419
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 5 cut(s) 69, 214, 217, 468, 502
Sau96I GGNCC 2 cut(s) 225, 226
SchI GAGTC 1 cut(s) 418
SduI GDGCHC 2 cut(s) 64, 229
SfaNI GCATC 2 cut(s) 179, 227
SmiMI CAYNNNNRTG 2 cut(s) 200, 419
Sse9I AATT 4 cut(s) 91, 143, 259, 344
SsiI CCGC 8 cut(s) 213, 217, 276, 326, 341, 363, 435, 467
SspMI CTAG 3 cut(s) 14, 180, 191
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 3 cut(s) 106, 284, 311
TaiI ACGT 2 cut(s) 305, 477
TaqI TCGA 1 cut(s) 162
TasI AATT 4 cut(s) 91, 143, 259, 344
TauI GCSGC 3 cut(s) 216, 219, 470
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 2 cut(s) 298, 421
TseI GCWGC 2 cut(s) 68, 501
Tsp45I GTSAC 2 cut(s) 298, 421
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 207
Tth111I GACNNNGTC 1 cut(s) 76
VneI GTGCAC 1 cut(s) 60
XapI RAATTY 2 cut(s) 259, 344
XceI RCATGY 1 cut(s) 68
XspI CTAG 3 cut(s) 14, 180, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.