Rmu_co8316645.1_g000001

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8316645.1
OG0000594
Physical Location & Seq
Forward (+)
1 .. 713
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8316645.1_g000001.1.cds

Sequence Viewer

Length: 668 bp
ctacaatcaccttcaccaacaactgcccctacaccgtatggccgggatccctcacctccgaccaacaaccccaactatccaccaccggcttcgagctagcacagggagccaaaaacgaggtcaccactcccgttccatggaaaggacgcttctgggcccgaaccggatgctccaccgctgccgacggaaagttctcctgcgccacagctgactgcgcctccggccaggtcacatgcaacggcaacggcgcagtcccaccggcaactctagttgaaatcaacatcgtagctgacggcggtcaggacttctacgacgtcagcctggtcgacggcttcaacgtgcccatgtccgtggcccctcagggtggaaccggcgactgccagacctctacatgcccggccgacgtgaacgccgcctgtccggcagagctgcaactgaaggccgccgacgggagcgtgatcgcctgcaagagcgcgtgtacggcgttcaacgagccacagtactgttgcacacctcccaatgacactcccgaaacctgtcctcccacaaactactctcagatctttgagaaccagtgccctcaggcttatagctacgcttatgatgacaagaacagcttgtttacatgcttcggtggacctaactacgccattacattctgtccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

221

Amino Acids

23.22

Weight (kDa)

4.05

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 317
AccI GTMKAC 1 cut(s) 326
AccII CGCG 1 cut(s) 475
AciI CCGC 4 cut(s) 176, 296, 413, 443
AclWI GGATC 2 cut(s) 41, 54
AcoI YGGCCR 3 cut(s) 40, 222, 398
AcuI CTGAAG 1 cut(s) 457
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 2 cut(s) 480, 502
AfiI CCNNNNNNNGG 4 cut(s) 137, 142, 364, 449
AgsI TTSAA 3 cut(s) 274, 336, 489
AjiI CACGTC 1 cut(s) 405
AjnI CCWGG 2 cut(s) 224, 320
AluBI AGCT 6 cut(s) 96, 208, 289, 429, 593, 617
AluI AGCT 6 cut(s) 96, 208, 289, 429, 593, 617
AlwI GGATC 2 cut(s) 41, 54
AoxI GGCC 6 cut(s) 40, 155, 222, 353, 398, 440
ApaI GGGCCC 1 cut(s) 159
ApeKI GCWGC 2 cut(s) 178, 429
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspLEI GCGC 4 cut(s) 202, 217, 250, 475
AspS9I GGNCC 4 cut(s) 155, 156, 354, 637
AsuC2I CCSGG 2 cut(s) 44, 397
AsuHPI GGTGA 3 cut(s) 6, 45, 114
AsuNHI GCTAGC 1 cut(s) 96
AvaII GGWCC 1 cut(s) 637
AxyI CCTNAGG 2 cut(s) 359, 581
BaeGI GKGCMC 3 cut(s) 159, 344, 580
BamHI GGATCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 165, 416
BceAI ACGGC 5 cut(s) 255, 261, 309, 345, 497
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BciT130I CCWGG 2 cut(s) 226, 322
BcnI CCSGG 2 cut(s) 44, 397
BfaI CTAG 2 cut(s) 97, 268
BglI GCCNNNNNGGC 1 cut(s) 421
BglII AGATCT 1 cut(s) 560
BisI GCNGC 4 cut(s) 179, 413, 430, 443
BlsI GCNGC 4 cut(s) 180, 414, 431, 444
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 4 cut(s) 44, 226, 322, 397
Bme18I GGWCC 1 cut(s) 637
BmgBI CACGTC 1 cut(s) 405
BmgT120I GGNCC 4 cut(s) 155, 156, 354, 637
BmiI GGNNCC 5 cut(s) 48, 108, 157, 356, 369
BmrFI CCNGG 4 cut(s) 44, 226, 322, 397
BmsI GCATC 1 cut(s) 157
BmtI GCTAGC 1 cut(s) 100
BoxI GACNNNNGTC 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 44, 397
BsaHI GRCGYC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 136, 350
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 525, 555
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 142, 364, 449
Bse118I RCCGGY 3 cut(s) 85, 258, 370
Bse1I ACTGG 1 cut(s) 573
Bse21I CCTNAGG 2 cut(s) 359, 581
BseBI CCWGG 2 cut(s) 226, 322
BseDI CCNNGG 2 cut(s) 136, 350
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 4 cut(s) 137, 142, 364, 449
BseMII CTCAG 3 cut(s) 373, 571, 595
BseNI ACTGG 1 cut(s) 573
BseSI GKGCMC 3 cut(s) 159, 344, 580
BseX3I CGGCCG 1 cut(s) 398
BseXI GCAGC 2 cut(s) 165, 416
Bsh1236I CGCG 1 cut(s) 475
Bsh1285I CGRYCG 1 cut(s) 401
BshFI GGCC 6 cut(s) 42, 157, 224, 355, 400, 442
BsiEI CGRYCG 1 cut(s) 401
BsiSI CCGG 8 cut(s) 43, 86, 164, 221, 259, 371, 397, 421
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 4 cut(s) 137, 142, 364, 449
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 6 cut(s) 42, 157, 224, 355, 400, 442
Bsp120I GGGCCC 1 cut(s) 155
Bsp1286I GDGCHC 3 cut(s) 159, 344, 580
Bsp143I GATC 3 cut(s) 46, 458, 560
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 4 cut(s) 176, 296, 413, 443
BspANI GGCC 6 cut(s) 42, 157, 224, 355, 400, 442
BspCNI CTCAG 3 cut(s) 372, 570, 594
BspFNI CGCG 1 cut(s) 475
BspLI GGNNCC 5 cut(s) 48, 108, 157, 356, 369
BspOI GCTAGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 41, 54
BsrFI RCCGGY 3 cut(s) 85, 258, 370
BsrI ACTGG 1 cut(s) 573
BssAI RCCGGY 3 cut(s) 85, 258, 370
BssECI CCNNGG 2 cut(s) 136, 350
BssMI GATC 3 cut(s) 46, 458, 560
BssNI GRCGYC 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 2 cut(s) 226, 322
Bst4CI ACNGT 3 cut(s) 36, 500, 505
BstACI GRCGYC 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 98, 465
BstDEI CTNAG 3 cut(s) 359, 557, 581
BstDSI CCRYGG 2 cut(s) 136, 350
BstEII GGTNACC 1 cut(s) 120
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 475
BstHHI GCGC 4 cut(s) 202, 217, 250, 475
BstKTI GATC 3 cut(s) 49, 461, 563
BstMBI GATC 3 cut(s) 46, 458, 560
BstMCI CGRYCG 1 cut(s) 401
BstMWI GCNNNNNNNGC 5 cut(s) 106, 214, 221, 421, 481
BstNI CCWGG 2 cut(s) 226, 322
BstNSI RCATGY 3 cut(s) 236, 395, 629
BstPAI GACNNNNGTC 1 cut(s) 296
BstPI GGTNACC 1 cut(s) 120
BstSCI CCNGG 4 cut(s) 42, 224, 320, 395
BstSLI GKGCMC 3 cut(s) 159, 344, 580
BstUI CGCG 1 cut(s) 475
BstV1I GCAGC 2 cut(s) 165, 416
BstX2I RGATCY 2 cut(s) 46, 560
BstXI CCANNNNNNTGG 1 cut(s) 351
BstYI RGATCY 2 cut(s) 46, 560
BstZI CGGCCG 1 cut(s) 398
Bsu36I CCTNAGG 2 cut(s) 359, 581
BsuRI GGCC 6 cut(s) 42, 157, 224, 355, 400, 442
BtgI CCRYGG 2 cut(s) 136, 350
BtrI CACGTC 1 cut(s) 405
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 580
Cac8I GCNNGC 2 cut(s) 98, 465
CfoI GCGC 4 cut(s) 202, 217, 250, 475
Cfr10I RCCGGY 3 cut(s) 85, 258, 370
Cfr13I GGNCC 4 cut(s) 155, 156, 354, 637
CseI GACGC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 479, 501
CviAII CATG 6 cut(s) 137, 233, 345, 392, 626, 665
CviQI GTAC 2 cut(s) 479, 501
DdeI CTNAG 3 cut(s) 359, 557, 581
DpnI GATC 3 cut(s) 48, 460, 562
DpnII GATC 3 cut(s) 46, 458, 560
EaeI YGGCCR 3 cut(s) 40, 222, 398
EagI CGGCCG 1 cut(s) 398
EclXI CGGCCG 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 637
Eco52I CGGCCG 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 457
Eco81I CCTNAGG 2 cut(s) 359, 581
Eco91I GGTNACC 1 cut(s) 120
EcoO65I GGTNACC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 224, 320
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 6 cut(s) 140, 236, 348, 395, 629, 668
FaiI YATR 9 cut(s) 39, 138, 234, 346, 393, 590, 602, 627, 666
FalI AAGNNNNNCTT 2 cut(s) 601, 633
FaqI GGGAC 1 cut(s) 238
FatI CATG 6 cut(s) 136, 232, 344, 391, 625, 664
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 4 cut(s) 179, 413, 430, 443
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 4 cut(s) 179, 413, 430, 443
FspBI CTAG 2 cut(s) 97, 268
GlaI GCGC 4 cut(s) 201, 216, 249, 474
GluI GCNGC 4 cut(s) 179, 413, 430, 443
HaeIII GGCC 6 cut(s) 42, 157, 224, 355, 400, 442
HapII CCGG 8 cut(s) 43, 86, 164, 221, 259, 371, 397, 421
HgaI GACGC 1 cut(s) 155
HhaI GCGC 4 cut(s) 202, 217, 250, 475
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 6 cut(s) 140, 236, 348, 395, 629, 668
Hin6I GCGC 4 cut(s) 200, 215, 248, 473
HinP1I GCGC 4 cut(s) 200, 215, 248, 473
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HpaII CCGG 8 cut(s) 43, 86, 164, 221, 259, 371, 397, 421
HphI GGTGA 3 cut(s) 6, 45, 114
Hpy166II GTNNAC 5 cut(s) 327, 408, 479, 623, 637
Hpy188I TCNGA 2 cut(s) 60, 560
Hpy188III TCNNGA 2 cut(s) 301, 529
Hpy8I GTNNAC 5 cut(s) 327, 408, 479, 623, 637
Hpy99I CGWCG 5 cut(s) 187, 316, 331, 406, 451
HpyAV CCTTC 2 cut(s) 21, 432
HpyCH4III ACNGT 3 cut(s) 36, 500, 505
HpyCH4IV ACGT 3 cut(s) 314, 338, 404
HpyCH4V TGCA 4 cut(s) 236, 432, 467, 509
HpyF10VI GCNNNNNNNGC 5 cut(s) 106, 214, 221, 421, 481
HpyF3I CTNAG 3 cut(s) 359, 557, 581
HpySE526I ACGT 3 cut(s) 314, 338, 404
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 6 cut(s) 140, 236, 348, 395, 629, 668
HspAI GCGC 4 cut(s) 200, 215, 248, 473
Kzo9I GATC 3 cut(s) 46, 458, 560
LmnI GCTCC 3 cut(s) 106, 175, 452
Lsp1109I GCAGC 2 cut(s) 165, 416
LweI GCATC 1 cut(s) 157
MaeI CTAG 2 cut(s) 97, 268
MaeII ACGT 3 cut(s) 314, 338, 404
MaeIII GTNAC 2 cut(s) 120, 228
MalI GATC 3 cut(s) 48, 460, 562
MboI GATC 3 cut(s) 46, 458, 560
MflI RGATCY 2 cut(s) 46, 560
MhlI GDGCHC 3 cut(s) 159, 344, 580
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 9 cut(s) 61, 66, 111, 228, 368, 396, 524, 551, 590
MslI CAYNNNNRTG 1 cut(s) 349
MspA1I CMGCKG 2 cut(s) 178, 208
MspI CCGG 8 cut(s) 43, 86, 164, 221, 259, 371, 397, 421
MspR9I CCNGG 4 cut(s) 44, 226, 322, 397
MvaI CCWGG 2 cut(s) 226, 322
MvnI CGCG 1 cut(s) 475
MwoI GCNNNNNNNGC 5 cut(s) 106, 214, 221, 421, 481
NciI CCSGG 2 cut(s) 44, 397
NcoI CCATGG 1 cut(s) 136
NdeII GATC 3 cut(s) 46, 458, 560
NheI GCTAGC 1 cut(s) 96
NlaIII CATG 6 cut(s) 140, 236, 348, 395, 629, 668
NlaIV GGNNCC 5 cut(s) 48, 108, 157, 356, 369
NmuCI GTSAC 2 cut(s) 120, 228
NspI RCATGY 3 cut(s) 236, 395, 629
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PkrI GCNGC 4 cut(s) 180, 414, 431, 444
PshAI GACNNNNGTC 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 224, 320
PspEI GGTNACC 1 cut(s) 120
PspGI CCWGG 2 cut(s) 224, 320
PspN4I GGNNCC 5 cut(s) 48, 108, 157, 356, 369
PspOMI GGGCCC 1 cut(s) 155
PspPI GGNCC 4 cut(s) 155, 156, 354, 637
PsuI RGATCY 2 cut(s) 46, 560
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 2 cut(s) 480, 502
RsaNI GTAC 2 cut(s) 479, 501
RseI CAYNNNNRTG 1 cut(s) 349
SalI GTCGAC 1 cut(s) 325
SatI GCNGC 4 cut(s) 179, 413, 430, 443
Sau3AI GATC 3 cut(s) 46, 458, 560
Sau96I GGNCC 4 cut(s) 155, 156, 354, 637
ScaI AGTACT 1 cut(s) 502
ScrFI CCNGG 4 cut(s) 44, 226, 322, 397
SduI GDGCHC 3 cut(s) 159, 344, 580
SfaNI GCATC 1 cut(s) 157
SinI GGWCC 1 cut(s) 637
SmiMI CAYNNNNRTG 1 cut(s) 349
SsiI CCGC 4 cut(s) 176, 296, 413, 443
SspMI CTAG 2 cut(s) 97, 268
StyD4I CCNGG 4 cut(s) 42, 224, 320, 395
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 3 cut(s) 36, 500, 505
TaiI ACGT 3 cut(s) 317, 341, 407
TaqI TCGA 2 cut(s) 92, 326
TatI WGTACW 1 cut(s) 500
TauI GCSGC 2 cut(s) 415, 445
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 2 cut(s) 120, 228
TseI GCWGC 2 cut(s) 178, 429
Tsp45I GTSAC 2 cut(s) 120, 228
TspGWI ACGGA 2 cut(s) 200, 339
TspRI CASTG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 637
XceI RCATGY 3 cut(s) 236, 395, 629
XmiI GTMKAC 1 cut(s) 326
XspI CTAG 2 cut(s) 97, 268
ZraI GACGTC 1 cut(s) 315
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.