pycom04g01470

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000594
Physical Location & Seq
Reverse (-)
1351377 .. 1352369
993 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g01470.2

Sequence Viewer

Length: 738 bp
ATGATGAACAACCAAGTAATCTTCAGTCTCACCTTAGCCATCTTCTTCGCAGGTGCACATGCAGCTACGATCACCTTCACCAACCGTTGCACCTATACCGTATGGCCAGGGTCCCTAACCTCCGATCAACAACCACAACTATCCTCCACAGGGTTCGAGTTAGCATCCGGCGCTAGCAGTTCCTTGACCACTCCAGTCCCATGGAAAGGCCGCTTCTGGGGCCGAACCGGATGCTCCACTGACGCCTCAGGAAAGTTCAGTTGTGCCACAGCAGAATGTAACTCTGGCCAAGTCGCATGCAACGGTAACGGAGCAGTTCCACCAGCAAGCCTAGTCGAAATAAATATTGTCCCAAACGGAGGCCAAGATTTCTACGACGTAAGTCTTGTTGATGGCTTCAACTTGCCCGTGTCTGTTGCCCCACAAGGCGGCACGGGCGACTGCCAGACCTCTTCCTGCCCCGCCAACGTCAATGCTGCTTGCCCAGCTGAGCTGCAAGTGAAGGGGTCCGATGGGAGCGTAATTGCATGCAAGAGTGCGTGTACACAATTTAATCAACCTCAATACTGCTGCACTCCTCCTAATGAAACACCAGCTAAATGTCCACCCACAAACTACTCTCAGATCTTTGAGAACCAGTGCCCTCAAGCTTATAGCTACGCTTATGATGATGTCAACAGCACCTTTACATGCAGCGGTGGACCAAACTACGTTATTACATTCTGTCCATCAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

246

Amino Acids

25.58

Weight (kDa)

4.41

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 41
Acc36I ACCTGC 1 cut(s) 41
AciI CCGC 4 cut(s) 211, 429, 462, 696
AcoI YGGCCR 2 cut(s) 104, 286
AcuI CTGAAG 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 1 cut(s) 544
AfiI CCNNNNNNNGG 5 cut(s) 150, 206, 217, 359, 428
AgsI TTSAA 1 cut(s) 400
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 6 cut(s) 65, 488, 493, 596, 650, 657
AluI AGCT 6 cut(s) 65, 488, 493, 596, 650, 657
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 54
AoxI GGCC 5 cut(s) 104, 208, 220, 286, 361
ApaLI GTGCAC 1 cut(s) 54
ApeKI GCWGC 5 cut(s) 62, 476, 493, 570, 693
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 4 cut(s) 111, 220, 507, 701
AsuHPI GGTGA 3 cut(s) 22, 64, 70
AsuNHI GCTAGC 1 cut(s) 173
AvaII GGWCC 3 cut(s) 111, 507, 701
AxyI CCTNAGG 1 cut(s) 247
BaeGI GKGCMC 2 cut(s) 58, 644
BalI TGGCCA 2 cut(s) 106, 288
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 5 cut(s) 74, 463, 480, 557, 705
BccI CCATC 4 cut(s) 47, 386, 506, 736
BcgI CGANNNNNNTGC 2 cut(s) 213, 247
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 2 cut(s) 174, 332
BfoI RGCGCY 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 41
BglII AGATCT 1 cut(s) 624
BisI GCNGC 7 cut(s) 63, 211, 430, 477, 494, 571, 694
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 7 cut(s) 64, 212, 431, 478, 495, 572, 695
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 3 cut(s) 111, 507, 701
BmgT120I GGNCC 4 cut(s) 111, 220, 507, 701
BmiI GGNNCC 4 cut(s) 112, 113, 221, 508
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 173, 221
BmtI GCTAGC 1 cut(s) 177
BoxI GACNNNNGTC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 34
Bpu1102I GCTNAGC 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 630
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 107, 200
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 5 cut(s) 150, 206, 217, 359, 428
Bse1I ACTGG 2 cut(s) 194, 637
Bse21I CCTNAGG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 107, 200
BseGI GGATG 2 cut(s) 164, 236
BseLI CCNNNNNNNGG 5 cut(s) 150, 206, 217, 359, 428
BseMII CTCAG 3 cut(s) 261, 480, 635
BseNI ACTGG 2 cut(s) 194, 637
BseRI GAGGAG 1 cut(s) 567
BseSI GKGCMC 2 cut(s) 58, 644
BseXI GCAGC 5 cut(s) 74, 463, 480, 557, 705
BseYI CCCAGC 1 cut(s) 484
BsgI GTGCAG 1 cut(s) 556
BshFI GGCC 5 cut(s) 106, 210, 222, 288, 363
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 168, 228
BslFI GGGAC 3 cut(s) 97, 182, 335
BslI CCNNNNNNNGG 5 cut(s) 150, 206, 217, 359, 428
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 3 cut(s) 97, 182, 335
BsnI GGCC 5 cut(s) 106, 210, 222, 288, 363
Bsp1286I GDGCHC 2 cut(s) 58, 644
Bsp1407I TGTACA 1 cut(s) 542
Bsp143I GATC 3 cut(s) 69, 124, 624
Bsp1720I GCTNAGC 1 cut(s) 489
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 4 cut(s) 211, 429, 462, 696
BspANI GGCC 5 cut(s) 106, 210, 222, 288, 363
BspCNI CTCAG 3 cut(s) 260, 481, 634
BspLI GGNNCC 4 cut(s) 112, 113, 221, 508
BspMI ACCTGC 1 cut(s) 41
BspOI GCTAGC 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 542
BsrI ACTGG 2 cut(s) 194, 637
BssECI CCNNGG 2 cut(s) 107, 200
BssMI GATC 3 cut(s) 69, 124, 624
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 86, 100, 305
Bst6I CTCTTC 1 cut(s) 457
BstACI GRCGYC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 542
BstC8I GCNNGC 5 cut(s) 175, 298, 328, 481, 529
BstDEI CTNAG 4 cut(s) 34, 247, 489, 621
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 164, 236
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 3 cut(s) 72, 127, 627
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 69, 124, 624
BstMWI GCNNNNNNNGC 5 cut(s) 62, 170, 219, 435, 485
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 4 cut(s) 62, 300, 531, 693
BstPAI GACNNNNGTC 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 2 cut(s) 58, 644
BstV1I GCAGC 5 cut(s) 74, 463, 480, 557, 705
BstX2I RGATCY 1 cut(s) 624
BstXI CCANNNNNNTGG 1 cut(s) 201
BstYI RGATCY 1 cut(s) 624
Bsu36I CCTNAGG 1 cut(s) 247
BsuRI GGCC 5 cut(s) 106, 210, 222, 288, 363
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 164, 236
BtsIMutI CAGTG 2 cut(s) 237, 644
BveI ACCTGC 1 cut(s) 41
Cac8I GCNNGC 5 cut(s) 175, 298, 328, 481, 529
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 4 cut(s) 111, 220, 507, 701
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 543
CviAII CATG 5 cut(s) 59, 201, 297, 528, 690
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 4 cut(s) 34, 247, 489, 621
DpnI GATC 3 cut(s) 71, 126, 626
DpnII GATC 3 cut(s) 69, 124, 624
EaeI YGGCCR 2 cut(s) 104, 286
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 200
Eco47I GGWCC 3 cut(s) 111, 507, 701
Eco57I CTGAAG 1 cut(s) 7
Eco81I CCTNAGG 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 5 cut(s) 62, 204, 300, 531, 693
FaiI YATR 9 cut(s) 60, 96, 103, 202, 298, 529, 654, 666, 691
FaqI GGGAC 3 cut(s) 97, 182, 335
FatI CATG 5 cut(s) 58, 200, 296, 527, 689
FauI CCCGC 1 cut(s) 469
Fnu4HI GCNGC 7 cut(s) 63, 211, 430, 477, 494, 571, 694
FokI GGATG 2 cut(s) 151, 243
Fsp4HI GCNGC 7 cut(s) 63, 211, 430, 477, 494, 571, 694
FspBI CTAG 2 cut(s) 174, 332
GlaI GCGC 1 cut(s) 172
GluI GCNGC 7 cut(s) 63, 211, 430, 477, 494, 571, 694
GsaI CCCAGC 1 cut(s) 488
GsuI CTGGAG 1 cut(s) 177
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 5 cut(s) 106, 210, 222, 288, 363
HapII CCGG 2 cut(s) 168, 228
HgaI GACGC 1 cut(s) 251
HhaI GCGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 5 cut(s) 62, 204, 300, 531, 693
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 648
HpaII CCGG 2 cut(s) 168, 228
HphI GGTGA 3 cut(s) 22, 64, 70
Hpy166II GTNNAC 6 cut(s) 56, 543, 545, 605, 676, 701
Hpy188I TCNGA 3 cut(s) 124, 511, 624
Hpy188III TCNNGA 1 cut(s) 249
Hpy8I GTNNAC 6 cut(s) 56, 543, 545, 605, 676, 701
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 85, 496
HpyCH4III ACNGT 3 cut(s) 86, 100, 305
HpyCH4IV ACGT 3 cut(s) 378, 468, 711
HpyCH4V TGCA 9 cut(s) 56, 62, 90, 300, 496, 527, 531, 573, 693
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 170, 219, 435, 485
HpyF3I CTNAG 4 cut(s) 34, 247, 489, 621
HpySE526I ACGT 3 cut(s) 378, 468, 711
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 5 cut(s) 62, 204, 300, 531, 693
HspAI GCGC 1 cut(s) 171
KflI GGGWCCC 1 cut(s) 111
Kzo9I GATC 3 cut(s) 69, 124, 624
LmnI GCTCC 3 cut(s) 239, 311, 516
Lsp1109I GCAGC 5 cut(s) 74, 463, 480, 557, 705
LweI GCATC 2 cut(s) 173, 221
MaeI CTAG 2 cut(s) 174, 332
MaeII ACGT 3 cut(s) 378, 468, 711
MaeIII GTNAC 2 cut(s) 278, 305
MalI GATC 3 cut(s) 71, 126, 626
MboI GATC 3 cut(s) 69, 124, 624
MboII GAAGA 4 cut(s) 13, 34, 37, 444
MflI RGATCY 1 cut(s) 624
MhlI GDGCHC 2 cut(s) 58, 644
MlsI TGGCCA 2 cut(s) 106, 288
MluCI AATT 2 cut(s) 522, 548
MluNI TGGCCA 2 cut(s) 106, 288
MnlI CCTC 8 cut(s) 130, 154, 256, 353, 460, 570, 588, 654
Mox20I TGGCCA 2 cut(s) 106, 288
MscI TGGCCA 2 cut(s) 106, 288
MseI TTAA 1 cut(s) 552
Msp20I TGGCCA 2 cut(s) 106, 288
MspA1I CMGCKG 2 cut(s) 488, 696
MspI CCGG 2 cut(s) 168, 228
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 5 cut(s) 62, 170, 219, 435, 485
NcoI CCATGG 1 cut(s) 200
NdeII GATC 3 cut(s) 69, 124, 624
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 5 cut(s) 62, 204, 300, 531, 693
NlaIV GGNNCC 4 cut(s) 112, 113, 221, 508
NspI RCATGY 4 cut(s) 62, 300, 531, 693
PaeI GCATGC 2 cut(s) 300, 531
PaqCI CACCTGC 1 cut(s) 41
PkrI GCNGC 7 cut(s) 64, 212, 431, 478, 495, 572, 695
PpuMI RGGWCCY 1 cut(s) 111
PshAI GACNNNNGTC 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 484
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 4 cut(s) 112, 113, 221, 508
PspPI GGNCC 4 cut(s) 111, 220, 507, 701
PspPPI RGGWCCY 1 cut(s) 111
PsuI RGATCY 1 cut(s) 624
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 7 cut(s) 63, 211, 430, 477, 494, 571, 694
Sau3AI GATC 3 cut(s) 69, 124, 624
Sau96I GGNCC 4 cut(s) 111, 220, 507, 701
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 2 cut(s) 58, 644
SfaNI GCATC 2 cut(s) 173, 221
SinI GGWCC 3 cut(s) 111, 507, 701
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
SphI GCATGC 2 cut(s) 300, 531
Sse9I AATT 2 cut(s) 522, 548
SsiI CCGC 4 cut(s) 211, 429, 462, 696
SspI AATATT 1 cut(s) 346
SspMI CTAG 2 cut(s) 174, 332
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 3 cut(s) 86, 100, 305
TaiI ACGT 3 cut(s) 381, 471, 714
TaqI TCGA 2 cut(s) 156, 336
TasI AATT 2 cut(s) 522, 548
TatI WGTACW 1 cut(s) 542
TauI GCSGC 2 cut(s) 213, 432
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 2 cut(s) 244, 644
TseI GCWGC 5 cut(s) 62, 476, 493, 570, 693
TspDTI ATGAA 2 cut(s) 20, 600
TspGWI ACGGA 2 cut(s) 324, 372
TspRI CASTG 2 cut(s) 244, 644
VneI GTGCAC 1 cut(s) 54
VpaK11BI GGWCC 3 cut(s) 111, 507, 701
XceI RCATGY 4 cut(s) 62, 300, 531, 693
XspI CTAG 2 cut(s) 174, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.