Prupe.3G143900_v2.0.a1

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000594
Physical Location & Seq
Forward (+)
15610723 .. 15611911
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G143900.1

Sequence Viewer

Length: 747 bp
ATGACGATGATGAAGAGCCAAGCAGCTCTCCTTGGCCTCACCACCTTGGCCATCCTCTTCTTCTCAGGTGCACATGCAGCTAAAATCACTTTCACAAACAAATGTTCCTACACTGTCTGGCCAGGAACCCTAACCGGTGACCAAAAACCTCAATTATCACTCACTGGGTTCGAGTTAGCAACCGGAATTAGCCGCTCTGTGGACGCTCCGTCCCCATGGTCCGGTCGCTTCTTTGGCCGAACCAGGTGCTCCACGGACGCATCAGGAAAGTTCACTTGTGCCACCGCAGATTGTGGTTCTGGCCAAGTCTCATGCAACGGTAACGGCGCAGCTCCGCCAGCTACATTAGTAGAAATCACTATTGCTTCGAACGGGGGTCAAGACTTCTACGACGTTAGTCTTGTTGACGGCTTCAACTTGCCCATGTCCGTGGCTCCACAAGGCGGCACCGGCGACTGTAAGGCGTCAACTTGCCCTGCCGATATTAACAAAGTGTGCCCGGCTCCGTTACAAGTGAAGGGATCTGATGGAAGCGTAATTGCGTGCAAGAGCGCTTGCTTAGCATTCAACCAGCCAAAATACTGTTGCACTCCACCTAACGACAAGCCGGAGACATGCCCTCCCACTGATTACTCTAAGCTCTTCAAGACCCAGTGCCCTCAAGCTTATAGCTATGCTTATGATGACAAGAGCAGCACCTTCACATGCAGTGGTAGACCTGACTACCTCATCACATTCTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

249

Amino Acids

26.03

Weight (kDa)

7.32

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AccBSI CCGCTC 1 cut(s) 195
AccI GTMKAC 1 cut(s) 715
AciI CCGC 4 cut(s) 193, 285, 335, 444
AclWI GGATC 1 cut(s) 529
AcoI YGGCCR 4 cut(s) 48, 119, 235, 301
AcyI GRCGYC 1 cut(s) 464
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 3 cut(s) 199, 221, 443
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 3 cut(s) 415, 568, 646
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 2 cut(s) 121, 242
AluBI AGCT 7 cut(s) 26, 80, 332, 341, 640, 665, 672
AluI AGCT 7 cut(s) 26, 80, 332, 341, 640, 665, 672
Alw21I GWGCWC 2 cut(s) 73, 251
Alw26I GTCTC 2 cut(s) 313, 605
Alw44I GTGCAC 1 cut(s) 69
AlwI GGATC 1 cut(s) 529
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 5 cut(s) 34, 48, 119, 235, 301
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 4 cut(s) 23, 77, 329, 693
AsiGI ACCGGT 1 cut(s) 134
AspLEI GCGC 2 cut(s) 329, 554
AspS9I GGNCC 1 cut(s) 219
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 2 cut(s) 31, 149
AsuII TTCGAA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 3 cut(s) 73, 500, 659
BalI TGGCCA 3 cut(s) 50, 121, 303
BanI GGYRCC 1 cut(s) 446
Bbv12I GWGCWC 2 cut(s) 73, 251
BbvI GCAGC 4 cut(s) 35, 89, 341, 705
BccI CCATC 2 cut(s) 59, 521
BceAI ACGGC 2 cut(s) 340, 424
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 2 cut(s) 123, 244
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 2 cut(s) 313, 605
BfoI RGCGCY 1 cut(s) 555
BisI GCNGC 6 cut(s) 24, 78, 193, 330, 445, 694
BlpI GCTNAGC 1 cut(s) 559
BlsI GCNGC 6 cut(s) 25, 79, 194, 331, 446, 695
Bme1390I CCNGG 3 cut(s) 123, 244, 500
Bme18I GGWCC 1 cut(s) 219
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 4 cut(s) 127, 435, 448, 504
BmrFI CCNGG 3 cut(s) 123, 244, 500
BmrI ACTGGG 2 cut(s) 174, 646
BmsI GCATC 1 cut(s) 269
BmuI ACTGGG 2 cut(s) 174, 646
BoxI GACNNNNGTC 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 559
Bpu14I TTCGAA 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 645
BpuMI CCSGG 1 cut(s) 500
BsaHI GRCGYC 1 cut(s) 464
BsaJI CCNNGG 5 cut(s) 31, 45, 215, 252, 429
BsaWI WCCGGW 3 cut(s) 134, 182, 221
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 221, 443
Bse118I RCCGGY 2 cut(s) 134, 449
Bse1I ACTGG 2 cut(s) 169, 652
BseBI CCWGG 2 cut(s) 123, 244
BseDI CCNNGG 5 cut(s) 31, 45, 215, 252, 429
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 3 cut(s) 199, 221, 443
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 2 cut(s) 169, 652
BseSI GKGCMC 3 cut(s) 73, 500, 659
BseXI GCAGC 4 cut(s) 35, 89, 341, 705
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 5 cut(s) 36, 50, 121, 237, 303
BshNI GGYRCC 1 cut(s) 446
BshTI ACCGGT 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 2 cut(s) 73, 251
BsiSI CCGG 6 cut(s) 135, 183, 222, 450, 500, 608
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 3 cut(s) 199, 221, 443
BsmAI GTCTC 2 cut(s) 313, 605
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 5 cut(s) 36, 50, 121, 237, 303
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 4 cut(s) 73, 251, 500, 659
Bsp143I GATC 1 cut(s) 521
Bsp1720I GCTNAGC 1 cut(s) 559
Bsp19I CCATGG 1 cut(s) 215
BspACI CCGC 4 cut(s) 193, 285, 335, 444
BspANI GGCC 5 cut(s) 36, 50, 121, 237, 303
BspCNI CTCAG 1 cut(s) 77
BspLI GGNNCC 4 cut(s) 127, 435, 448, 504
BspPI GGATC 1 cut(s) 529
BspQI GCTCTTC 2 cut(s) 8, 647
BspT104I TTCGAA 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 446
BsrBI CCGCTC 1 cut(s) 195
BsrFI RCCGGY 2 cut(s) 134, 449
BsrI ACTGG 2 cut(s) 169, 652
BssAI RCCGGY 2 cut(s) 134, 449
BssECI CCNNGG 5 cut(s) 31, 45, 215, 252, 429
BssMI GATC 1 cut(s) 521
BssNI GRCGYC 1 cut(s) 464
BssT1I CCWWGG 3 cut(s) 31, 45, 215
Bst2UI CCWGG 2 cut(s) 123, 244
Bst4CI ACNGT 4 cut(s) 115, 320, 458, 584
Bst6I CTCTTC 3 cut(s) 8, 62, 647
BstACI GRCGYC 1 cut(s) 464
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 3 cut(s) 339, 544, 556
BstDEI CTNAG 3 cut(s) 64, 559, 636
BstDSI CCRYGG 3 cut(s) 215, 252, 429
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 2 cut(s) 329, 554
BstKTI GATC 1 cut(s) 524
BstMAI GTCTC 2 cut(s) 313, 605
BstMBI GATC 1 cut(s) 521
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 5 cut(s) 77, 234, 338, 450, 560
BstNI CCWGG 2 cut(s) 123, 244
BstNSI RCATGY 3 cut(s) 77, 618, 708
BstPAI GACNNNNGTC 1 cut(s) 396
BstPI GGTNACC 1 cut(s) 137
BstSCI CCNGG 3 cut(s) 121, 242, 498
BstSLI GKGCMC 3 cut(s) 73, 500, 659
BstV1I GCAGC 4 cut(s) 35, 89, 341, 705
BstX2I RGATCY 1 cut(s) 521
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 1 cut(s) 521
BsuRI GGCC 5 cut(s) 36, 50, 121, 237, 303
BtgI CCRYGG 3 cut(s) 215, 252, 429
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 5 cut(s) 111, 162, 624, 659, 715
Cac8I GCNNGC 3 cut(s) 339, 544, 556
CfoI GCGC 2 cut(s) 329, 554
Cfr10I RCCGGY 2 cut(s) 134, 449
Cfr13I GGNCC 1 cut(s) 219
CseI GACGC 3 cut(s) 212, 266, 453
CsiI ACCWGGT 1 cut(s) 242
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 6 cut(s) 74, 216, 312, 424, 615, 705
DdeI CTNAG 3 cut(s) 64, 559, 636
DpnI GATC 1 cut(s) 523
DpnII GATC 1 cut(s) 521
DriI GACNNNNNGTC 1 cut(s) 208
EaeI YGGCCR 4 cut(s) 48, 119, 235, 301
Eam1104I CTCTTC 3 cut(s) 8, 62, 647
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 3 cut(s) 8, 62, 647
EciI GGCGGA 1 cut(s) 324
Eco130I CCWWGG 3 cut(s) 31, 45, 215
Eco47I GGWCC 1 cut(s) 219
Eco47III AGCGCT 1 cut(s) 553
Eco91I GGTNACC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 121, 242
EcoT14I CCWWGG 3 cut(s) 31, 45, 215
ErhI CCWWGG 3 cut(s) 31, 45, 215
FaeI CATG 6 cut(s) 77, 219, 315, 427, 618, 708
FaqI GGGAC 1 cut(s) 196
FatI CATG 6 cut(s) 73, 215, 311, 423, 614, 704
FblI GTMKAC 1 cut(s) 715
Fnu4HI GCNGC 6 cut(s) 24, 78, 193, 330, 445, 694
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 6 cut(s) 24, 78, 193, 330, 445, 694
GlaI GCGC 2 cut(s) 328, 553
GluI GCNGC 6 cut(s) 24, 78, 193, 330, 445, 694
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 5 cut(s) 36, 50, 121, 237, 303
HapII CCGG 6 cut(s) 135, 183, 222, 450, 500, 608
HgaI GACGC 3 cut(s) 212, 266, 453
HhaI GCGC 2 cut(s) 329, 554
Hin1I GRCGYC 1 cut(s) 464
Hin1II CATG 6 cut(s) 77, 219, 315, 427, 618, 708
Hin6I GCGC 2 cut(s) 327, 552
HinP1I GCGC 2 cut(s) 327, 552
HincII GTYRAC 2 cut(s) 406, 468
HindII GTYRAC 2 cut(s) 406, 468
HindIII AAGCTT 1 cut(s) 663
HpaII CCGG 6 cut(s) 135, 183, 222, 450, 500, 608
HphI GGTGA 2 cut(s) 31, 149
Hpy166II GTNNAC 6 cut(s) 71, 202, 273, 406, 468, 716
Hpy188I TCNGA 1 cut(s) 526
Hpy188III TCNNGA 3 cut(s) 264, 380, 646
Hpy8I GTNNAC 6 cut(s) 71, 202, 273, 406, 468, 716
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 2 cut(s) 511, 709
HpyCH4III ACNGT 4 cut(s) 115, 320, 458, 584
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 6 cut(s) 71, 77, 315, 546, 588, 708
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 234, 338, 450, 560
HpyF3I CTNAG 3 cut(s) 64, 559, 636
HpySE526I ACGT 1 cut(s) 393
Hsp92I GRCGYC 1 cut(s) 464
Hsp92II CATG 6 cut(s) 77, 219, 315, 427, 618, 708
HspAI GCGC 2 cut(s) 327, 552
Kzo9I GATC 1 cut(s) 521
LguI GCTCTTC 2 cut(s) 8, 647
LmnI GCTCC 5 cut(s) 211, 254, 337, 439, 508
Lsp1109I GCAGC 4 cut(s) 35, 89, 341, 705
LweI GCATC 1 cut(s) 269
MabI ACCWGGT 1 cut(s) 242
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 3 cut(s) 137, 320, 507
MalI GATC 1 cut(s) 523
MbiI CCGCTC 1 cut(s) 195
MboI GATC 1 cut(s) 521
MboII GAAGA 4 cut(s) 25, 49, 52, 634
MflI RGATCY 1 cut(s) 521
MhlI GDGCHC 4 cut(s) 73, 251, 500, 659
MlsI TGGCCA 3 cut(s) 50, 121, 303
MluCI AATT 3 cut(s) 152, 186, 537
MluNI TGGCCA 3 cut(s) 50, 121, 303
MnlI CCTC 6 cut(s) 47, 65, 159, 630, 669, 737
Mox20I TGGCCA 3 cut(s) 50, 121, 303
MscI TGGCCA 3 cut(s) 50, 121, 303
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 1 cut(s) 428
Msp20I TGGCCA 3 cut(s) 50, 121, 303
MspI CCGG 6 cut(s) 135, 183, 222, 450, 500, 608
MspR9I CCNGG 3 cut(s) 123, 244, 500
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 2 cut(s) 123, 244
MwoI GCNNNNNNNGC 5 cut(s) 77, 234, 338, 450, 560
NciI CCSGG 1 cut(s) 500
NcoI CCATGG 1 cut(s) 215
NdeII GATC 1 cut(s) 521
NlaIII CATG 6 cut(s) 77, 219, 315, 427, 618, 708
NlaIV GGNNCC 4 cut(s) 127, 435, 448, 504
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 3 cut(s) 77, 618, 708
NspV TTCGAA 1 cut(s) 368
PciSI GCTCTTC 2 cut(s) 8, 647
PctI GAATGC 1 cut(s) 563
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 6 cut(s) 25, 79, 194, 331, 446, 695
PshAI GACNNNNGTC 1 cut(s) 396
Psp6I CCWGG 2 cut(s) 121, 242
PspEI GGTNACC 1 cut(s) 137
PspGI CCWGG 2 cut(s) 121, 242
PspN4I GGNNCC 4 cut(s) 127, 435, 448, 504
PspPI GGNCC 1 cut(s) 219
PsuI RGATCY 1 cut(s) 521
RseI CAYNNNNRTG 1 cut(s) 428
SapI GCTCTTC 2 cut(s) 8, 647
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 6 cut(s) 24, 78, 193, 330, 445, 694
Sau3AI GATC 1 cut(s) 521
Sau96I GGNCC 1 cut(s) 219
ScrFI CCNGG 3 cut(s) 123, 244, 500
SduI GDGCHC 4 cut(s) 73, 251, 500, 659
SexAI ACCWGGT 1 cut(s) 242
SfaNI GCATC 1 cut(s) 269
SfuI TTCGAA 1 cut(s) 368
SgrAI CRCCGGYG 1 cut(s) 449
SinI GGWCC 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 660
SmoI CTYRAG 1 cut(s) 660
Sse9I AATT 3 cut(s) 152, 186, 537
SsiI CCGC 4 cut(s) 193, 285, 335, 444
StyD4I CCNGG 3 cut(s) 121, 242, 498
StyI CCWWGG 3 cut(s) 31, 45, 215
TaaI ACNGT 4 cut(s) 115, 320, 458, 584
TaiI ACGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 171, 368
TasI AATT 3 cut(s) 152, 186, 537
TauI GCSGC 2 cut(s) 195, 447
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 5 cut(s) 118, 169, 631, 659, 715
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 4 cut(s) 23, 77, 329, 693
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 26
TspGWI ACGGA 4 cut(s) 198, 269, 418, 495
TspRI CASTG 5 cut(s) 118, 169, 631, 659, 715
VneI GTGCAC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 219
XceI RCATGY 3 cut(s) 77, 618, 708
XmiI GTMKAC 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.