RLG00000023242

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000594
Physical Location & Seq
Forward (+)
20430985 .. 20431864
880 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023242

Sequence Viewer

Length: 741 bp
ATGAAAATCCAAGTGCTTCTCTACCTCACCTTCGCCTTCCTTTTCTTTCCAGGCGGACATCCGGCTACAATTTCTTTCACAAACAAGTGCACCTTCAACGTCTGGCCAGCAACCCTAACTTCTGATAACAAACCTCAGTTAGCATTGACGGGGTTCGAGTTAGCACCCCAAGCTAGCAAATCCATAGACACTCCGGTTCCATGGAATGGCCGCTTCTGGGGCCGTACCAACTGCTTCACGGACAATTCAGGAATGTTCACTTGTGACAAACCAGGGGATTGCGCATCCGGTCAGGTCTCATGCAACGGAAAAGGAGGAATTCCGCCAGCCACGTTGGTGGAAATTAATATCCCAGCAGGTGGGGGTCAAGATTTCTACGATGTTAGTCTTGTTGACGGCTTCAACTTGCCCATCTCCGTAGCCCCTCAAGGCGGTCACGCTCCCGGGGACTGTCGGAGCTCTAGCTGCAGCGCCAACGTGAACGCTGTGTGTCCGAGTGAGCTACAAGTAACGGGGGCTGGCGGGAGCGTGGTTGGCTGCATGAGCGCTTGCGTGAAGTTCAATGAGCCCAAGTATTGCTGCACTCCACCTAATGAAAAGCCAGGGACATGTCCTCCTACAGACTACTCTATGAAGTTTAGTCAACAATGCCCTGAGGCTTACAGCTACGCTTATGATGACAAGAAAGGCACATTCACTTGCTCCGGGGGACCTAACTACGCTATTACTTTCTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

247

Amino Acids

26.01

Weight (kDa)

5.31

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 28 - 246 2.2e-74 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 347
Acc16I TGCGCA 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 347
AccB7I CCANNNNNTGG 2 cut(s) 206, 359
AciI CCGC 5 cut(s) 54, 211, 323, 432, 522
AcoI YGGCCR 2 cut(s) 104, 208
AcsI RAATTY 1 cut(s) 318
AfaI GTAC 1 cut(s) 226
AfeI AGCGCT 1 cut(s) 547
AfiI CCNNNNNNNGG 4 cut(s) 206, 217, 359, 431
AflIII ACRYGT 1 cut(s) 608
AgsI TTSAA 3 cut(s) 97, 403, 562
AjnI CCWGG 3 cut(s) 49, 271, 601
AleI CACNNNNGTG 1 cut(s) 335
AluBI AGCT 5 cut(s) 173, 459, 465, 502, 666
AluI AGCT 5 cut(s) 173, 459, 465, 502, 666
Alw21I GWGCWC 2 cut(s) 92, 461
Alw26I GTCTC 1 cut(s) 301
Alw44I GTGCAC 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 443
Aor51HI AGCGCT 1 cut(s) 547
AoxI GGCC 3 cut(s) 104, 208, 220
ApaLI GTGCAC 1 cut(s) 88
ApeKI GCWGC 4 cut(s) 465, 468, 537, 579
ApoI RAATTY 1 cut(s) 318
AseI ATTAAT 1 cut(s) 345
AspLEI GCGC 3 cut(s) 284, 473, 548
AspS9I GGNCC 2 cut(s) 220, 710
AsuC2I CCSGG 3 cut(s) 444, 445, 706
AsuHPI GGTGA 1 cut(s) 19
AsuNHI GCTAGC 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 1 cut(s) 710
AxyI CCTNAGG 1 cut(s) 654
BaeGI GKGCMC 1 cut(s) 92
BalI TGGCCA 1 cut(s) 106
BanII GRGCYC 2 cut(s) 461, 570
Bbv12I GWGCWC 2 cut(s) 92, 461
BbvI GCAGC 4 cut(s) 452, 480, 524, 566
BccI CCATC 1 cut(s) 419
BceAI ACGGC 2 cut(s) 207, 412
BciT130I CCWGG 3 cut(s) 51, 273, 603
BcnI CCSGG 3 cut(s) 444, 445, 706
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 2 cut(s) 174, 462
BfmI CTRYAG 2 cut(s) 466, 618
BfoI RGCGCY 2 cut(s) 474, 549
BfuAI ACCTGC 1 cut(s) 347
BisI GCNGC 5 cut(s) 211, 466, 469, 538, 580
BlsI GCNGC 5 cut(s) 212, 467, 470, 539, 581
Bme1390I CCNGG 6 cut(s) 51, 273, 444, 445, 603, 706
Bme18I GGWCC 1 cut(s) 710
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 2 cut(s) 220, 710
BmiI GGNNCC 3 cut(s) 198, 221, 711
BmrFI CCNGG 6 cut(s) 51, 273, 444, 445, 603, 706
BmsI GCATC 1 cut(s) 293
BmtI GCTAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 3 cut(s) 444, 445, 706
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 6 cut(s) 200, 272, 443, 444, 602, 705
BsaWI WCCGGW 2 cut(s) 193, 287
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 217, 359, 431
Bse21I CCTNAGG 1 cut(s) 654
BseBI CCWGG 3 cut(s) 51, 273, 603
BseDI CCNNGG 6 cut(s) 200, 272, 443, 444, 602, 705
BseGI GGATG 2 cut(s) 58, 284
BseLI CCNNNNNNNGG 4 cut(s) 206, 217, 359, 431
BseMII CTCAG 2 cut(s) 149, 645
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 4 cut(s) 452, 480, 524, 566
BseYI CCCAGC 1 cut(s) 352
BsgI GTGCAG 1 cut(s) 565
BshFI GGCC 3 cut(s) 106, 210, 222
BsiHKAI GWGCWC 2 cut(s) 92, 461
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 5 cut(s) 62, 194, 288, 444, 705
BslFI GGGAC 3 cut(s) 461, 619, 723
BslI CCNNNNNNNGG 4 cut(s) 206, 217, 359, 431
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 3 cut(s) 461, 619, 723
BsnI GGCC 3 cut(s) 106, 210, 222
Bso31I GGTCTC 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 443
Bsp1286I GDGCHC 3 cut(s) 92, 461, 570
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 5 cut(s) 54, 211, 323, 432, 522
BspANI GGCC 3 cut(s) 106, 210, 222
BspCNI CTCAG 2 cut(s) 148, 646
BspLI GGNNCC 3 cut(s) 198, 221, 711
BspMAI CTGCAG 1 cut(s) 470
BspMI ACCTGC 1 cut(s) 347
BspOI GCTAGC 1 cut(s) 177
BspTNI GGTCTC 1 cut(s) 301
BssECI CCNNGG 6 cut(s) 200, 272, 443, 444, 602, 705
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 3 cut(s) 51, 273, 603
Bst4CI ACNGT 1 cut(s) 452
BstC8I GCNNGC 5 cut(s) 108, 175, 327, 520, 550
BstDEI CTNAG 2 cut(s) 135, 654
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 58, 284
BstH2I RGCGCY 2 cut(s) 474, 549
BstHHI GCGC 3 cut(s) 284, 473, 548
BstMAI GTCTC 1 cut(s) 301
BstMWI GCNNNNNNNGC 5 cut(s) 170, 219, 465, 534, 543
BstNI CCWGG 3 cut(s) 51, 273, 603
BstNSI RCATGY 1 cut(s) 612
BstSCI CCNGG 6 cut(s) 49, 271, 442, 443, 601, 704
BstSFI CTRYAG 2 cut(s) 466, 618
BstSLI GKGCMC 1 cut(s) 92
BstV1I GCAGC 4 cut(s) 452, 480, 524, 566
BstXI CCANNNNNNTGG 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 654
BsuRI GGCC 3 cut(s) 106, 210, 222
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 58, 284
BveI ACCTGC 1 cut(s) 347
Cac8I GCNNGC 5 cut(s) 108, 175, 327, 520, 550
CfoI GCGC 3 cut(s) 284, 473, 548
Cfr13I GGNCC 2 cut(s) 220, 710
Cfr9I CCCGGG 1 cut(s) 443
Csp6I GTAC 1 cut(s) 225
CviAII CATG 4 cut(s) 201, 300, 541, 609
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 2 cut(s) 135, 654
EaeI YGGCCR 2 cut(s) 104, 208
EciI GGCGGA 2 cut(s) 69, 312
Ecl136II GAGCTC 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 200
Eco24I GRGCYC 2 cut(s) 461, 570
Eco31I GGTCTC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 710
Eco47III AGCGCT 1 cut(s) 547
Eco53kI GAGCTC 1 cut(s) 459
Eco81I CCTNAGG 1 cut(s) 654
Eco88I CYCGRG 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 318
EcoRII CCWGG 3 cut(s) 49, 271, 601
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 2 cut(s) 461, 570
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 4 cut(s) 204, 303, 544, 612
FaiI YATR 7 cut(s) 185, 202, 301, 542, 610, 632, 675
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FaqI GGGAC 3 cut(s) 461, 619, 723
FatI CATG 4 cut(s) 200, 299, 540, 608
FauI CCCGC 1 cut(s) 515
Fnu4HI GCNGC 5 cut(s) 211, 466, 469, 538, 580
FokI GGATG 2 cut(s) 45, 271
FriOI GRGCYC 2 cut(s) 461, 570
Fsp4HI GCNGC 5 cut(s) 211, 466, 469, 538, 580
FspBI CTAG 2 cut(s) 174, 462
FspI TGCGCA 1 cut(s) 283
GlaI GCGC 3 cut(s) 283, 472, 547
GluI GCNGC 5 cut(s) 211, 466, 469, 538, 580
GsaI CCCAGC 1 cut(s) 356
HaeII RGCGCY 2 cut(s) 474, 549
HaeIII GGCC 3 cut(s) 106, 210, 222
HapII CCGG 5 cut(s) 62, 194, 288, 444, 705
HhaI GCGC 3 cut(s) 284, 473, 548
Hin1II CATG 4 cut(s) 204, 303, 544, 612
Hin6I GCGC 3 cut(s) 282, 471, 546
HinP1I GCGC 3 cut(s) 282, 471, 546
HincII GTYRAC 2 cut(s) 394, 644
HindII GTYRAC 2 cut(s) 394, 644
HpaII CCGG 5 cut(s) 62, 194, 288, 444, 705
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 5 cut(s) 90, 258, 394, 481, 644
Hpy188I TCNGA 3 cut(s) 124, 456, 495
Hpy188III TCNNGA 2 cut(s) 249, 368
Hpy8I GTNNAC 5 cut(s) 90, 258, 394, 481, 644
HpyAV CCTTC 3 cut(s) 40, 46, 103
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 3 cut(s) 99, 332, 477
HpyCH4V TGCA 5 cut(s) 90, 303, 468, 540, 582
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 219, 465, 534, 543
HpyF3I CTNAG 2 cut(s) 135, 654
HpySE526I ACGT 3 cut(s) 99, 332, 477
Hsp92II CATG 4 cut(s) 204, 303, 544, 612
HspAI GCGC 3 cut(s) 282, 471, 546
LmnI GCTCC 4 cut(s) 445, 456, 525, 707
Lsp1109I GCAGC 4 cut(s) 452, 480, 524, 566
LweI GCATC 1 cut(s) 293
MaeI CTAG 2 cut(s) 174, 462
MaeII ACGT 3 cut(s) 99, 332, 477
MaeIII GTNAC 3 cut(s) 263, 434, 508
MhlI GDGCHC 3 cut(s) 92, 461, 570
MlsI TGGCCA 1 cut(s) 106
MluCI AATT 4 cut(s) 69, 244, 318, 342
MluNI TGGCCA 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 6 cut(s) 35, 144, 308, 435, 624, 649
Mox20I TGGCCA 1 cut(s) 106
MscI TGGCCA 1 cut(s) 106
MseI TTAA 2 cut(s) 345, 739
MslI CAYNNNNRTG 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 106
MspI CCGG 5 cut(s) 62, 194, 288, 444, 705
MspR9I CCNGG 6 cut(s) 51, 273, 444, 445, 603, 706
MvaI CCWGG 3 cut(s) 51, 273, 603
MwoI GCNNNNNNNGC 5 cut(s) 170, 219, 465, 534, 543
NciI CCSGG 3 cut(s) 444, 445, 706
NcoI CCATGG 1 cut(s) 200
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 4 cut(s) 204, 303, 544, 612
NlaIV GGNNCC 3 cut(s) 198, 221, 711
NmuCI GTSAC 2 cut(s) 263, 434
NsbI TGCGCA 1 cut(s) 283
NspI RCATGY 1 cut(s) 612
OliI CACNNNNGTG 1 cut(s) 335
PaqCI CACCTGC 1 cut(s) 347
PciI ACATGT 1 cut(s) 608
PflMI CCANNNNNTGG 2 cut(s) 206, 359
PkrI GCNGC 5 cut(s) 212, 467, 470, 539, 581
PpuMI RGGWCCY 1 cut(s) 710
PscI ACATGT 1 cut(s) 608
PshBI ATTAAT 1 cut(s) 345
Psp124BI GAGCTC 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 710
Psp6I CCWGG 3 cut(s) 49, 271, 601
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 3 cut(s) 49, 271, 601
PspN4I GGNNCC 3 cut(s) 198, 221, 711
PspPI GGNCC 2 cut(s) 220, 710
PspPPI RGGWCCY 1 cut(s) 710
PstI CTGCAG 1 cut(s) 470
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 461
SaqAI TTAA 2 cut(s) 345, 739
SatI GCNGC 5 cut(s) 211, 466, 469, 538, 580
Sau96I GGNCC 2 cut(s) 220, 710
ScrFI CCNGG 6 cut(s) 51, 273, 444, 445, 603, 706
SduI GDGCHC 3 cut(s) 92, 461, 570
SfaNI GCATC 1 cut(s) 293
SfcI CTRYAG 2 cut(s) 466, 618
SinI GGWCC 1 cut(s) 710
SmaI CCCGGG 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
Sse9I AATT 4 cut(s) 69, 244, 318, 342
SsiI CCGC 5 cut(s) 54, 211, 323, 432, 522
SspMI CTAG 2 cut(s) 174, 462
SstI GAGCTC 1 cut(s) 461
StyD4I CCNGG 6 cut(s) 49, 271, 442, 443, 601, 704
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 3 cut(s) 102, 335, 480
TaqI TCGA 1 cut(s) 156
TasI AATT 4 cut(s) 69, 244, 318, 342
TauI GCSGC 1 cut(s) 213
Tru1I TTAA 2 cut(s) 345, 739
Tru9I TTAA 2 cut(s) 345, 739
TseFI GTSAC 2 cut(s) 263, 434
TseI GCWGC 4 cut(s) 465, 468, 537, 579
Tsp45I GTSAC 2 cut(s) 263, 434
TspDTI ATGAA 3 cut(s) 17, 609, 647
TspGWI ACGGA 3 cut(s) 254, 321, 406
TspMI CCCGGG 1 cut(s) 443
Van91I CCANNNNNTGG 2 cut(s) 206, 359
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 710
VspI ATTAAT 1 cut(s) 345
XapI RAATTY 1 cut(s) 318
XceI RCATGY 1 cut(s) 612
XmaI CCCGGG 1 cut(s) 443
XspI CTAG 2 cut(s) 174, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.