Rh3DG289200

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000594
Physical Location & Seq
Reverse (-)
29858301 .. 29859184
884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG289200.1

Sequence Viewer

Length: 747 bp
ATGATGAAAATCCAAGTGCTAATTCTCTACCTCACCTTGGCCTTCCTTTTCTTTCCAGGTGCACATTCGGCTACAATTTCTTTCACAAACAAGTGCACCTTCATGGTCTGGCCAGCAACCCTAACTTCTGATAACAAACCTCAGTTAGCATCGACCGGGTTCGAGTTAGCACCCCAAGCTAGCAATTCCATAGACACTCCGGTTCCATGGAATGGCCGCTTCTGGGGCCGTACCAACTGCTTCACGGACAATTCAGGAATGTTCACTTGTGACAAACCAGGGGATTGCGCATCCGGTCAGGTCTCATGCAACGGAAAAGGAGGAATTCCGCCAGCCACTTTGGTGGAAATTAATATCCCAGCAGGTGGGGGTCAAGATTTCTACGATGTTAGTCTTGTTGACGGCTTCAACTTGCCCATCTCCGTAACCCCTCAAGGCGGTCACGCTCCCGGGGACTGTCGGAGCTCTAGCTGCAGCGCCAACGTGAACGCTATGTGTCCGAGTGAGCTACAAGTAACGGGGGCTGGCGGGAGCGTGGTTGGCTGCATGAGCGCGTGCTTGAAGTTCAAAGAGCCCAAGTATTGCTGCACTCCACCTAATGAAAAGCCAGAGACATGTCCTCCTACAGACTACTCTATGAAGTTTAGTCAACAATGCCCTGAGGCTTACAGCTATGCTTATGATGACAAGAAAGGCACATTCACTTGCTCCGGGGGACCTAACTACGCTATTACTTTCTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

248

Amino Acids

26.36

Weight (kDa)

5.11

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 30 - 248 3.5e-75 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 353
Acc16I TGCGCA 1 cut(s) 289
Acc36I ACCTGC 1 cut(s) 353
AccB7I CCANNNNNTGG 2 cut(s) 212, 365
AccII CGCG 1 cut(s) 554
AciI CCGC 4 cut(s) 217, 329, 438, 528
AcoI YGGCCR 2 cut(s) 110, 214
AcsI RAATTY 1 cut(s) 324
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 5 cut(s) 37, 212, 223, 365, 437
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 3 cut(s) 409, 562, 568
AjnI CCWGG 2 cut(s) 55, 277
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AleI CACNNNNGTG 1 cut(s) 341
AluBI AGCT 5 cut(s) 179, 465, 471, 508, 672
AluI AGCT 5 cut(s) 179, 465, 471, 508, 672
Alw21I GWGCWC 3 cut(s) 64, 98, 467
Alw26I GTCTC 2 cut(s) 307, 605
Alw44I GTGCAC 2 cut(s) 60, 94
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 4 cut(s) 39, 110, 214, 226
ApaLI GTGCAC 2 cut(s) 60, 94
ApeKI GCWGC 4 cut(s) 471, 474, 543, 585
ApoI RAATTY 1 cut(s) 324
AseI ATTAAT 1 cut(s) 351
AspLEI GCGC 3 cut(s) 290, 479, 554
AspS9I GGNCC 2 cut(s) 226, 716
AsuC2I CCSGG 4 cut(s) 157, 450, 451, 712
AsuHPI GGTGA 1 cut(s) 25
AsuNHI GCTAGC 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 1 cut(s) 716
AxyI CCTNAGG 1 cut(s) 660
BaeGI GKGCMC 2 cut(s) 64, 98
BalI TGGCCA 1 cut(s) 112
BanII GRGCYC 2 cut(s) 467, 576
Bbv12I GWGCWC 3 cut(s) 64, 98, 467
BbvI GCAGC 4 cut(s) 458, 486, 530, 572
BccI CCATC 1 cut(s) 425
BceAI ACGGC 2 cut(s) 213, 418
BciT130I CCWGG 2 cut(s) 57, 279
BcnI CCSGG 4 cut(s) 157, 450, 451, 712
BcoDI GTCTC 2 cut(s) 307, 605
BfaI CTAG 2 cut(s) 180, 468
BfmI CTRYAG 2 cut(s) 472, 624
BfoI RGCGCY 1 cut(s) 480
BfuAI ACCTGC 1 cut(s) 353
BisI GCNGC 5 cut(s) 217, 472, 475, 544, 586
BlsI GCNGC 5 cut(s) 218, 473, 476, 545, 587
Bme1390I CCNGG 6 cut(s) 57, 157, 279, 450, 451, 712
Bme18I GGWCC 1 cut(s) 716
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 226, 716
BmiI GGNNCC 3 cut(s) 204, 227, 717
BmrFI CCNGG 6 cut(s) 57, 157, 279, 450, 451, 712
BmsI GCATC 2 cut(s) 158, 299
BmtI GCTAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 417
BpuMI CCSGG 4 cut(s) 157, 450, 451, 712
BsaBI GATNNNNATC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 6 cut(s) 36, 206, 278, 449, 450, 711
BsaWI WCCGGW 2 cut(s) 199, 293
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 212, 223, 365, 437
Bse21I CCTNAGG 1 cut(s) 660
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 57, 279
BseDI CCNNGG 6 cut(s) 36, 206, 278, 449, 450, 711
BseGI GGATG 1 cut(s) 290
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 5 cut(s) 37, 212, 223, 365, 437
BseMII CTCAG 2 cut(s) 155, 651
BseSI GKGCMC 2 cut(s) 64, 98
BseXI GCAGC 4 cut(s) 458, 486, 530, 572
BseYI CCCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 554
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 4 cut(s) 41, 112, 216, 228
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 3 cut(s) 64, 98, 467
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 5 cut(s) 156, 200, 294, 450, 711
BslFI GGGAC 2 cut(s) 467, 729
BslI CCNNNNNNNGG 5 cut(s) 37, 212, 223, 365, 437
BsmAI GTCTC 2 cut(s) 307, 605
BsmFI GGGAC 2 cut(s) 467, 729
BsnI GGCC 4 cut(s) 41, 112, 216, 228
Bso31I GGTCTC 1 cut(s) 307
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 4 cut(s) 64, 98, 467, 576
Bsp19I CCATGG 1 cut(s) 206
BspACI CCGC 4 cut(s) 217, 329, 438, 528
BspANI GGCC 4 cut(s) 41, 112, 216, 228
BspCNI CTCAG 2 cut(s) 154, 652
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 3 cut(s) 204, 227, 717
BspMAI CTGCAG 1 cut(s) 476
BspMI ACCTGC 1 cut(s) 353
BspOI GCTAGC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 307
BssECI CCNNGG 6 cut(s) 36, 206, 278, 449, 450, 711
BssT1I CCWWGG 2 cut(s) 36, 206
Bst2UI CCWGG 2 cut(s) 57, 279
Bst4CI ACNGT 1 cut(s) 458
BstC8I GCNNGC 5 cut(s) 114, 181, 333, 526, 556
BstDEI CTNAG 2 cut(s) 141, 660
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 290
BstFNI CGCG 1 cut(s) 554
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 3 cut(s) 290, 479, 554
BstMAI GTCTC 2 cut(s) 307, 605
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 6 cut(s) 68, 176, 225, 471, 540, 549
BstNI CCWGG 2 cut(s) 57, 279
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 6 cut(s) 55, 155, 277, 448, 449, 710
BstSFI CTRYAG 2 cut(s) 472, 624
BstSLI GKGCMC 2 cut(s) 64, 98
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 4 cut(s) 458, 486, 530, 572
BstXI CCANNNNNNTGG 1 cut(s) 343
Bsu36I CCTNAGG 1 cut(s) 660
BsuRI GGCC 4 cut(s) 41, 112, 216, 228
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 290
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 5 cut(s) 114, 181, 333, 526, 556
CfoI GCGC 3 cut(s) 290, 479, 554
Cfr13I GGNCC 2 cut(s) 226, 716
Cfr9I CCCGGG 1 cut(s) 449
Csp6I GTAC 1 cut(s) 231
CviAII CATG 5 cut(s) 103, 207, 306, 547, 615
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 141, 660
EaeI YGGCCR 2 cut(s) 110, 214
EciI GGCGGA 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 36, 206
Eco24I GRGCYC 2 cut(s) 467, 576
Eco31I GGTCTC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 716
Eco53kI GAGCTC 1 cut(s) 465
Eco81I CCTNAGG 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 55, 277
EcoT14I CCWWGG 2 cut(s) 36, 206
EcoT38I GRGCYC 2 cut(s) 467, 576
ErhI CCWWGG 2 cut(s) 36, 206
FaeI CATG 5 cut(s) 106, 210, 309, 550, 618
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 2 cut(s) 467, 729
FatI CATG 5 cut(s) 102, 206, 305, 546, 614
FauI CCCGC 1 cut(s) 521
Fnu4HI GCNGC 5 cut(s) 217, 472, 475, 544, 586
FokI GGATG 1 cut(s) 277
FriOI GRGCYC 2 cut(s) 467, 576
Fsp4HI GCNGC 5 cut(s) 217, 472, 475, 544, 586
FspBI CTAG 2 cut(s) 180, 468
FspI TGCGCA 1 cut(s) 289
GlaI GCGC 3 cut(s) 289, 478, 553
GluI GCNGC 5 cut(s) 217, 472, 475, 544, 586
GsaI CCCAGC 1 cut(s) 362
HaeII RGCGCY 1 cut(s) 480
HaeIII GGCC 4 cut(s) 41, 112, 216, 228
HapII CCGG 5 cut(s) 156, 200, 294, 450, 711
HhaI GCGC 3 cut(s) 290, 479, 554
Hin1II CATG 5 cut(s) 106, 210, 309, 550, 618
Hin6I GCGC 3 cut(s) 288, 477, 552
HinP1I GCGC 3 cut(s) 288, 477, 552
HincII GTYRAC 2 cut(s) 400, 650
HindII GTYRAC 2 cut(s) 400, 650
HpaII CCGG 5 cut(s) 156, 200, 294, 450, 711
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 6 cut(s) 62, 96, 264, 400, 487, 650
Hpy188I TCNGA 3 cut(s) 130, 462, 501
Hpy188III TCNNGA 2 cut(s) 255, 374
Hpy8I GTNNAC 6 cut(s) 62, 96, 264, 400, 487, 650
HpyAV CCTTC 2 cut(s) 52, 109
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 6 cut(s) 62, 96, 309, 474, 546, 588
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 176, 225, 471, 540, 549
HpyF3I CTNAG 2 cut(s) 141, 660
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 5 cut(s) 106, 210, 309, 550, 618
HspAI GCGC 3 cut(s) 288, 477, 552
LmnI GCTCC 4 cut(s) 451, 462, 531, 713
Lsp1109I GCAGC 4 cut(s) 458, 486, 530, 572
LweI GCATC 2 cut(s) 158, 299
MaeI CTAG 2 cut(s) 180, 468
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 4 cut(s) 269, 424, 440, 514
MhlI GDGCHC 4 cut(s) 64, 98, 467, 576
MlsI TGGCCA 1 cut(s) 112
MluCI AATT 6 cut(s) 21, 75, 184, 250, 324, 348
MluNI TGGCCA 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 6 cut(s) 41, 150, 314, 441, 630, 655
Mox20I TGGCCA 1 cut(s) 112
MscI TGGCCA 1 cut(s) 112
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 2 cut(s) 101, 341
Msp20I TGGCCA 1 cut(s) 112
MspI CCGG 5 cut(s) 156, 200, 294, 450, 711
MspR9I CCNGG 6 cut(s) 57, 157, 279, 450, 451, 712
MvaI CCWGG 2 cut(s) 57, 279
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 6 cut(s) 68, 176, 225, 471, 540, 549
NciI CCSGG 4 cut(s) 157, 450, 451, 712
NcoI CCATGG 1 cut(s) 206
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 5 cut(s) 106, 210, 309, 550, 618
NlaIV GGNNCC 3 cut(s) 204, 227, 717
NmuCI GTSAC 2 cut(s) 269, 440
NsbI TGCGCA 1 cut(s) 289
NspI RCATGY 1 cut(s) 618
OliI CACNNNNGTG 1 cut(s) 341
PaqCI CACCTGC 1 cut(s) 353
PciI ACATGT 1 cut(s) 614
PflMI CCANNNNNTGG 2 cut(s) 212, 365
PkrI GCNGC 5 cut(s) 218, 473, 476, 545, 587
PpuMI RGGWCCY 1 cut(s) 716
PscI ACATGT 1 cut(s) 614
PshBI ATTAAT 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 716
Psp6I CCWGG 2 cut(s) 55, 277
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 2 cut(s) 55, 277
PspN4I GGNNCC 3 cut(s) 204, 227, 717
PspPI GGNCC 2 cut(s) 226, 716
PspPPI RGGWCCY 1 cut(s) 716
PstI CTGCAG 1 cut(s) 476
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 2 cut(s) 101, 341
SacI GAGCTC 1 cut(s) 467
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 5 cut(s) 217, 472, 475, 544, 586
Sau96I GGNCC 2 cut(s) 226, 716
ScrFI CCNGG 6 cut(s) 57, 157, 279, 450, 451, 712
SduI GDGCHC 4 cut(s) 64, 98, 467, 576
SfaNI GCATC 2 cut(s) 158, 299
SfcI CTRYAG 2 cut(s) 472, 624
SinI GGWCC 1 cut(s) 716
SmaI CCCGGG 1 cut(s) 451
SmiMI CAYNNNNRTG 2 cut(s) 101, 341
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 6 cut(s) 21, 75, 184, 250, 324, 348
SsiI CCGC 4 cut(s) 217, 329, 438, 528
SspMI CTAG 2 cut(s) 180, 468
SstI GAGCTC 1 cut(s) 467
StyD4I CCNGG 6 cut(s) 55, 155, 277, 448, 449, 710
StyI CCWWGG 2 cut(s) 36, 206
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 1 cut(s) 486
TaqI TCGA 2 cut(s) 152, 162
TasI AATT 6 cut(s) 21, 75, 184, 250, 324, 348
TauI GCSGC 1 cut(s) 219
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseFI GTSAC 2 cut(s) 269, 440
TseI GCWGC 4 cut(s) 471, 474, 543, 585
Tsp45I GTSAC 2 cut(s) 269, 440
TspDTI ATGAA 4 cut(s) 20, 91, 615, 653
TspGWI ACGGA 3 cut(s) 260, 327, 412
TspMI CCCGGG 1 cut(s) 449
Van91I CCANNNNNTGG 2 cut(s) 212, 365
VneI GTGCAC 2 cut(s) 60, 94
VpaK11BI GGWCC 1 cut(s) 716
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 618
XmaI CCCGGG 1 cut(s) 449
XspI CTAG 2 cut(s) 180, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.