Rmu_sc0011191.1_g000001

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011191.1
OG0000594
Physical Location & Seq
Reverse (-)
9938 .. 11048
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011191.1_g000001.1.cds

Sequence Viewer

Length: 729 bp
atgaacacccaagtactcctcagcctcaccttggccatattcttcgcaggtgcacatgcagctacaatcaccttcaccaacaactgcccctacaccgtatggccgggatccctcacctccgaccaacaaccccaactatccaccaccggcttcgagctagcacagggagccaaaaacgaggtcaccactcccgttccatggaaaggacgcttctgggcccgaaccggatgctccaccgctgccgacggaaagttctcctgcgccacagctgactgcgcctccggccaggtcacatgcaacggcaacggcgcagtcccaccggcaactctagttgaaatcaacatcgtagctgacggcggtcaggacttctacgacgtcagcctggtcgacggcttcaacgtgcccatgtccgtggcccctcagggtggaaccggcgactgccagacctctacatgcccggccgacgtgaacgccgcctgtccggcagagctgcaactgaaggccgccgacgggagcgtgatcgcctgcaagagcgcgtgtacggcgttcaacgagccacagtactgttgcacacctcccaatgacactcccgaaacctgtcctcccacaaactactctcagatctttgagaaccagtgccctcaggcttatagctacgcttatgatgacaagaacagcttgtttacatgcttcggtggacctaactacgccattacattctgtccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

242

Amino Acids

25.39

Weight (kDa)

4.11

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 38
AatII GACGTC 1 cut(s) 378
Acc36I ACCTGC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 387
AccII CGCG 1 cut(s) 536
AciI CCGC 4 cut(s) 237, 357, 474, 504
AclWI GGATC 2 cut(s) 102, 115
AcoI YGGCCR 4 cut(s) 33, 101, 283, 459
AcuI CTGAAG 1 cut(s) 518
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 3 cut(s) 15, 541, 563
AfiI CCNNNNNNNGG 5 cut(s) 31, 198, 203, 425, 510
AgsI TTSAA 3 cut(s) 335, 397, 550
AjiI CACGTC 1 cut(s) 466
AjnI CCWGG 2 cut(s) 285, 381
AluBI AGCT 7 cut(s) 62, 157, 269, 350, 490, 654, 678
AluI AGCT 7 cut(s) 62, 157, 269, 350, 490, 654, 678
Alw21I GWGCWC 1 cut(s) 55
Alw44I GTGCAC 1 cut(s) 51
AlwI GGATC 2 cut(s) 102, 115
AoxI GGCC 7 cut(s) 33, 101, 216, 283, 414, 459, 501
ApaI GGGCCC 1 cut(s) 220
ApaLI GTGCAC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 59, 239, 490
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
AspLEI GCGC 4 cut(s) 263, 278, 311, 536
AspS9I GGNCC 4 cut(s) 216, 217, 415, 698
AsuC2I CCSGG 2 cut(s) 105, 458
AsuHPI GGTGA 5 cut(s) 19, 61, 67, 106, 175
AsuNHI GCTAGC 1 cut(s) 157
AvaII GGWCC 1 cut(s) 698
AxyI CCTNAGG 2 cut(s) 420, 642
BaeGI GKGCMC 4 cut(s) 55, 220, 405, 641
BalI TGGCCA 1 cut(s) 35
BamHI GGATCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 55
BbvCI CCTCAGC 1 cut(s) 20
BbvI GCAGC 3 cut(s) 71, 226, 477
BceAI ACGGC 5 cut(s) 316, 322, 370, 406, 558
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 2 cut(s) 287, 383
BcnI CCSGG 2 cut(s) 105, 458
BfaI CTAG 2 cut(s) 158, 329
BfuAI ACCTGC 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 482
BglII AGATCT 1 cut(s) 621
BisI GCNGC 5 cut(s) 60, 240, 474, 491, 504
BlsI GCNGC 5 cut(s) 61, 241, 475, 492, 505
BmcAI AGTACT 2 cut(s) 15, 563
Bme1390I CCNGG 4 cut(s) 105, 287, 383, 458
Bme18I GGWCC 1 cut(s) 698
BmgBI CACGTC 1 cut(s) 466
BmgT120I GGNCC 4 cut(s) 216, 217, 415, 698
BmiI GGNNCC 5 cut(s) 109, 169, 218, 417, 430
BmrFI CCNGG 4 cut(s) 105, 287, 383, 458
BmsI GCATC 1 cut(s) 218
BmtI GCTAGC 1 cut(s) 161
BoxI GACNNNNGTC 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 20
BpuMI CCSGG 2 cut(s) 105, 458
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 3 cut(s) 30, 197, 411
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 586, 616
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 198, 203, 425, 510
Bse118I RCCGGY 3 cut(s) 146, 319, 431
Bse1I ACTGG 1 cut(s) 634
Bse21I CCTNAGG 2 cut(s) 420, 642
BseBI CCWGG 2 cut(s) 287, 383
BseDI CCNNGG 3 cut(s) 30, 197, 411
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 5 cut(s) 31, 198, 203, 425, 510
BseMII CTCAG 4 cut(s) 34, 434, 632, 656
BseNI ACTGG 1 cut(s) 634
BseRI GAGGAG 1 cut(s) 8
BseSI GKGCMC 4 cut(s) 55, 220, 405, 641
BseX3I CGGCCG 1 cut(s) 459
BseXI GCAGC 3 cut(s) 71, 226, 477
Bsh1236I CGCG 1 cut(s) 536
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 7 cut(s) 35, 103, 218, 285, 416, 461, 503
BsiEI CGRYCG 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 8 cut(s) 104, 147, 225, 282, 320, 432, 458, 482
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 5 cut(s) 31, 198, 203, 425, 510
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 7 cut(s) 35, 103, 218, 285, 416, 461, 503
Bsp120I GGGCCC 1 cut(s) 216
Bsp1286I GDGCHC 4 cut(s) 55, 220, 405, 641
Bsp143I GATC 3 cut(s) 107, 519, 621
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 4 cut(s) 237, 357, 474, 504
BspANI GGCC 7 cut(s) 35, 103, 218, 285, 416, 461, 503
BspCNI CTCAG 4 cut(s) 33, 433, 631, 655
BspFNI CGCG 1 cut(s) 536
BspLI GGNNCC 5 cut(s) 109, 169, 218, 417, 430
BspMI ACCTGC 1 cut(s) 38
BspOI GCTAGC 1 cut(s) 161
BspPI GGATC 2 cut(s) 102, 115
BsrFI RCCGGY 3 cut(s) 146, 319, 431
BsrI ACTGG 1 cut(s) 634
BssAI RCCGGY 3 cut(s) 146, 319, 431
BssECI CCNNGG 3 cut(s) 30, 197, 411
BssMI GATC 3 cut(s) 107, 519, 621
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 2 cut(s) 30, 197
Bst2UI CCWGG 2 cut(s) 287, 383
Bst4CI ACNGT 3 cut(s) 97, 561, 566
BstACI GRCGYC 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 159, 526
BstDEI CTNAG 4 cut(s) 20, 420, 618, 642
BstDSI CCRYGG 2 cut(s) 197, 411
BstEII GGTNACC 1 cut(s) 181
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 536
BstHHI GCGC 4 cut(s) 263, 278, 311, 536
BstKTI GATC 3 cut(s) 110, 522, 624
BstMBI GATC 3 cut(s) 107, 519, 621
BstMCI CGRYCG 1 cut(s) 462
BstMWI GCNNNNNNNGC 6 cut(s) 59, 167, 275, 282, 482, 542
BstNI CCWGG 2 cut(s) 287, 383
BstNSI RCATGY 4 cut(s) 59, 297, 456, 690
BstPAI GACNNNNGTC 1 cut(s) 357
BstPI GGTNACC 1 cut(s) 181
BstSCI CCNGG 4 cut(s) 103, 285, 381, 456
BstSLI GKGCMC 4 cut(s) 55, 220, 405, 641
BstUI CGCG 1 cut(s) 536
BstV1I GCAGC 3 cut(s) 71, 226, 477
BstX2I RGATCY 2 cut(s) 107, 621
BstXI CCANNNNNNTGG 1 cut(s) 412
BstYI RGATCY 2 cut(s) 107, 621
BstZI CGGCCG 1 cut(s) 459
Bsu36I CCTNAGG 2 cut(s) 420, 642
BsuRI GGCC 7 cut(s) 35, 103, 218, 285, 416, 461, 503
BtgI CCRYGG 2 cut(s) 197, 411
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 641
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 159, 526
CfoI GCGC 4 cut(s) 263, 278, 311, 536
Cfr10I RCCGGY 3 cut(s) 146, 319, 431
Cfr13I GGNCC 4 cut(s) 216, 217, 415, 698
CseI GACGC 1 cut(s) 216
Csp6I GTAC 3 cut(s) 14, 540, 562
CviAII CATG 7 cut(s) 56, 198, 294, 406, 453, 687, 726
CviQI GTAC 3 cut(s) 14, 540, 562
DdeI CTNAG 4 cut(s) 20, 420, 618, 642
DpnI GATC 3 cut(s) 109, 521, 623
DpnII GATC 3 cut(s) 107, 519, 621
EaeI YGGCCR 4 cut(s) 33, 101, 283, 459
EagI CGGCCG 1 cut(s) 459
EclXI CGGCCG 1 cut(s) 459
Eco130I CCWWGG 2 cut(s) 30, 197
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 698
Eco52I CGGCCG 1 cut(s) 459
Eco57I CTGAAG 1 cut(s) 518
Eco81I CCTNAGG 2 cut(s) 420, 642
Eco91I GGTNACC 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 181
EcoRII CCWGG 2 cut(s) 285, 381
EcoT14I CCWWGG 2 cut(s) 30, 197
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 2 cut(s) 30, 197
FaeI CATG 7 cut(s) 59, 201, 297, 409, 456, 690, 729
FalI AAGNNNNNCTT 2 cut(s) 662, 694
FaqI GGGAC 1 cut(s) 299
FatI CATG 7 cut(s) 55, 197, 293, 405, 452, 686, 725
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 5 cut(s) 60, 240, 474, 491, 504
FokI GGATG 1 cut(s) 240
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 5 cut(s) 60, 240, 474, 491, 504
FspBI CTAG 2 cut(s) 158, 329
GlaI GCGC 4 cut(s) 262, 277, 310, 535
GluI GCNGC 5 cut(s) 60, 240, 474, 491, 504
HaeIII GGCC 7 cut(s) 35, 103, 218, 285, 416, 461, 503
HapII CCGG 8 cut(s) 104, 147, 225, 282, 320, 432, 458, 482
HgaI GACGC 1 cut(s) 216
HhaI GCGC 4 cut(s) 263, 278, 311, 536
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 7 cut(s) 59, 201, 297, 409, 456, 690, 729
Hin6I GCGC 4 cut(s) 261, 276, 309, 534
HinP1I GCGC 4 cut(s) 261, 276, 309, 534
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HpaII CCGG 8 cut(s) 104, 147, 225, 282, 320, 432, 458, 482
HphI GGTGA 5 cut(s) 19, 61, 67, 106, 175
Hpy166II GTNNAC 6 cut(s) 53, 388, 469, 540, 684, 698
Hpy188I TCNGA 2 cut(s) 121, 621
Hpy188III TCNNGA 2 cut(s) 362, 590
Hpy8I GTNNAC 6 cut(s) 53, 388, 469, 540, 684, 698
Hpy99I CGWCG 5 cut(s) 248, 377, 392, 467, 512
HpyAV CCTTC 2 cut(s) 82, 493
HpyCH4III ACNGT 3 cut(s) 97, 561, 566
HpyCH4IV ACGT 3 cut(s) 375, 399, 465
HpyCH4V TGCA 6 cut(s) 53, 59, 297, 493, 528, 570
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 167, 275, 282, 482, 542
HpyF3I CTNAG 4 cut(s) 20, 420, 618, 642
HpySE526I ACGT 3 cut(s) 375, 399, 465
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 7 cut(s) 59, 201, 297, 409, 456, 690, 729
HspAI GCGC 4 cut(s) 261, 276, 309, 534
Kzo9I GATC 3 cut(s) 107, 519, 621
LmnI GCTCC 3 cut(s) 167, 236, 513
Lsp1109I GCAGC 3 cut(s) 71, 226, 477
LweI GCATC 1 cut(s) 218
MaeI CTAG 2 cut(s) 158, 329
MaeII ACGT 3 cut(s) 375, 399, 465
MaeIII GTNAC 2 cut(s) 181, 289
MalI GATC 3 cut(s) 109, 521, 623
MboI GATC 3 cut(s) 107, 519, 621
MboII GAAGA 1 cut(s) 34
MflI RGATCY 2 cut(s) 107, 621
MhlI GDGCHC 4 cut(s) 55, 220, 405, 641
MlsI TGGCCA 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 410
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 2 cut(s) 239, 269
MspI CCGG 8 cut(s) 104, 147, 225, 282, 320, 432, 458, 482
MspR9I CCNGG 4 cut(s) 105, 287, 383, 458
MvaI CCWGG 2 cut(s) 287, 383
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 6 cut(s) 59, 167, 275, 282, 482, 542
NciI CCSGG 2 cut(s) 105, 458
NcoI CCATGG 1 cut(s) 197
NdeII GATC 3 cut(s) 107, 519, 621
NheI GCTAGC 1 cut(s) 157
NlaIII CATG 7 cut(s) 59, 201, 297, 409, 456, 690, 729
NlaIV GGNNCC 5 cut(s) 109, 169, 218, 417, 430
NmuCI GTSAC 2 cut(s) 181, 289
NspI RCATGY 4 cut(s) 59, 297, 456, 690
PaqCI CACCTGC 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PkrI GCNGC 5 cut(s) 61, 241, 475, 492, 505
PshAI GACNNNNGTC 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 285, 381
PspEI GGTNACC 1 cut(s) 181
PspGI CCWGG 2 cut(s) 285, 381
PspN4I GGNNCC 5 cut(s) 109, 169, 218, 417, 430
PspOMI GGGCCC 1 cut(s) 216
PspPI GGNCC 4 cut(s) 216, 217, 415, 698
PsuI RGATCY 2 cut(s) 107, 621
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 3 cut(s) 15, 541, 563
RsaNI GTAC 3 cut(s) 14, 540, 562
RseI CAYNNNNRTG 1 cut(s) 410
SalI GTCGAC 1 cut(s) 386
SatI GCNGC 5 cut(s) 60, 240, 474, 491, 504
Sau3AI GATC 3 cut(s) 107, 519, 621
Sau96I GGNCC 4 cut(s) 216, 217, 415, 698
ScaI AGTACT 2 cut(s) 15, 563
ScrFI CCNGG 4 cut(s) 105, 287, 383, 458
SduI GDGCHC 4 cut(s) 55, 220, 405, 641
SfaNI GCATC 1 cut(s) 218
SinI GGWCC 1 cut(s) 698
SmiMI CAYNNNNRTG 1 cut(s) 410
SsiI CCGC 4 cut(s) 237, 357, 474, 504
SspMI CTAG 2 cut(s) 158, 329
StyD4I CCNGG 4 cut(s) 103, 285, 381, 456
StyI CCWWGG 2 cut(s) 30, 197
TaaI ACNGT 3 cut(s) 97, 561, 566
TaiI ACGT 3 cut(s) 378, 402, 468
TaqI TCGA 2 cut(s) 153, 387
TatI WGTACW 2 cut(s) 13, 561
TauI GCSGC 2 cut(s) 476, 506
TscAI CASTG 1 cut(s) 641
TseFI GTSAC 2 cut(s) 181, 289
TseI GCWGC 3 cut(s) 59, 239, 490
Tsp45I GTSAC 2 cut(s) 181, 289
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 261, 400
TspRI CASTG 1 cut(s) 641
VneI GTGCAC 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 698
XceI RCATGY 4 cut(s) 59, 297, 456, 690
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 2 cut(s) 158, 329
ZraI GACGTC 1 cut(s) 376
ZrmI AGTACT 2 cut(s) 15, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.