Prupe.7G051200_v2.0.a1

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000594
Physical Location & Seq
Reverse (-)
8900272 .. 8901709
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G051200.1

Sequence Viewer

Length: 738 bp
ATGATGAAGACCCTGGTAGTATTCCTCAGCCTCAGCTTAACCATCCTTTCCTTCGGAGGTGCACATGCAGCGACAATGTCTTTCAAAAACAACTGCCCCTACACGGTCTGGCCAGGAACCCTAACCTCCGATCAAAAACCTCAATTATCAACCACAGGGTTCGAGTTAGCATCCCAAGCTAGCTTCAGCCTAGACACTCCGGTGCCATGGAACGGCCGCTTCTGGGCCCGAACTGGATGCTCCACGGACGCCTCTGGAAAGTTCGTCTGTGCCACCGCAGACTGTGCCTCTGGTCAGGTCACGTGCAACGGTGCCGGTGCCATTCCGCCAGCAACTTTAGCGGAATTCAATATTCCAGCAGGCGGAGGACAAGATTTCTACGACGTTAGTCTTGTTGATGGCTTCAACTTGCCCATGTCTGTGACTCCACAAGGCGGTACCGGAGACTGCAAGACGGCTACTTGCCCTGCGAACGTGAACGCAGTTTGTCCGAGTGAGCTGCAAAAGATAGGGTCCGATGGGAGCGTGGTTGCCTGCTTGAGCGCATGTGTTAAATTCGGTGAGCCACGGTATTGTTGCACTCCGCCTCAAAACACTCCGGAGACATGCCCACCGACAAATTACTCTCAGCTATTCAGTCAAGCATGCCCCAACGCTTACAGCTATGCTTATGATGACAAAAAGGGTACATTTACATGCAATGGTGGACCTAACTACGCCATTACTTTCTGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

246

Amino Acids

25.62

Weight (kDa)

4.83

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 4 cut(s) 202, 311, 317, 437
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 7 cut(s) 217, 276, 326, 341, 363, 435, 584
AcoI YGGCCR 2 cut(s) 110, 214
AcsI RAATTY 2 cut(s) 344, 554
AcuI CTGAAG 1 cut(s) 169
AcvI CACGTG 1 cut(s) 303
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 2 cut(s) 439, 688
AfiI CCNNNNNNNGG 5 cut(s) 103, 212, 223, 362, 434
AgsI TTSAA 3 cut(s) 85, 349, 406
AjnI CCWGG 2 cut(s) 12, 112
AleI CACNNNNGTG 1 cut(s) 200
AluBI AGCT 6 cut(s) 36, 179, 183, 499, 631, 663
AluI AGCT 6 cut(s) 36, 179, 183, 499, 631, 663
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 2 cut(s) 438, 596
Alw44I GTGCAC 1 cut(s) 60
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 3 cut(s) 110, 214, 225
ApaI GGGCCC 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 68, 499
ApoI RAATTY 2 cut(s) 344, 554
Asp718I GGTACC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 4 cut(s) 225, 226, 513, 707
AsuHPI GGTGA 1 cut(s) 572
AsuNHI GCTAGC 1 cut(s) 179
AvaII GGWCC 2 cut(s) 513, 707
BaeGI GKGCMC 2 cut(s) 64, 229
BalI TGGCCA 1 cut(s) 112
BanI GGYRCC 4 cut(s) 202, 311, 317, 437
BanII GRGCYC 1 cut(s) 229
BbrPI CACGTG 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 64
BbvCI CCTCAGC 2 cut(s) 26, 32
BbvI GCAGC 2 cut(s) 80, 486
BccI CCATC 3 cut(s) 50, 392, 512
BceAI ACGGC 2 cut(s) 229, 471
BcgI CGANNNNNNTGC 4 cut(s) 219, 253, 481, 515
BciT130I CCWGG 2 cut(s) 14, 114
BcoDI GTCTC 2 cut(s) 438, 596
BfaI CTAG 2 cut(s) 180, 191
BisI GCNGC 3 cut(s) 69, 217, 500
BlsI GCNGC 3 cut(s) 70, 218, 501
Bme1390I CCNGG 2 cut(s) 14, 114
Bme18I GGWCC 2 cut(s) 513, 707
BmgT120I GGNCC 4 cut(s) 225, 226, 513, 707
BmiI GGNNCC 7 cut(s) 118, 204, 227, 313, 319, 439, 514
BmrFI CCNGG 2 cut(s) 14, 114
BmsI GCATC 2 cut(s) 179, 227
BmtI GCTAGC 1 cut(s) 183
BoxI GACNNNNGTC 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 2 cut(s) 26, 32
BpuEI CTTGAG 1 cut(s) 559
BsaAI YACGTR 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 4 cut(s) 12, 206, 243, 566
BsaWI WCCGGW 3 cut(s) 199, 440, 598
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 212, 223, 362, 434
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 706
BseAI TCCGGA 1 cut(s) 598
BseBI CCWGG 2 cut(s) 14, 114
BseDI CCNNGG 4 cut(s) 12, 206, 243, 566
BseGI GGATG 3 cut(s) 42, 170, 242
BseLI CCNNNNNNNGG 5 cut(s) 103, 212, 223, 362, 434
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 3 cut(s) 40, 46, 641
BseNI ACTGG 1 cut(s) 238
BseSI GKGCMC 2 cut(s) 64, 229
BseX3I CGGCCG 1 cut(s) 214
BseXI GCAGC 2 cut(s) 80, 486
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 3 cut(s) 112, 216, 227
BshNI GGYRCC 4 cut(s) 202, 311, 317, 437
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 4 cut(s) 200, 315, 441, 599
BslI CCNNNNNNNGG 5 cut(s) 103, 212, 223, 362, 434
BsmAI GTCTC 2 cut(s) 438, 596
BsnI GGCC 3 cut(s) 112, 216, 227
Bsp120I GGGCCC 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 64, 229
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 1 cut(s) 130
Bsp19I CCATGG 1 cut(s) 206
BspACI CCGC 7 cut(s) 217, 276, 326, 341, 363, 435, 584
BspANI GGCC 3 cut(s) 112, 216, 227
BspCNI CTCAG 3 cut(s) 39, 45, 640
BspEI TCCGGA 1 cut(s) 598
BspLI GGNNCC 7 cut(s) 118, 204, 227, 313, 319, 439, 514
BspOI GCTAGC 1 cut(s) 183
BspT107I GGYRCC 4 cut(s) 202, 311, 317, 437
BsrDI GCAATG 1 cut(s) 706
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 4 cut(s) 12, 206, 243, 566
BssMI GATC 1 cut(s) 130
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 14, 114
Bst4CI ACNGT 4 cut(s) 106, 284, 311, 570
BstACI GRCGYC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 284
BstBAI YACGTR 1 cut(s) 303
BstC8I GCNNGC 5 cut(s) 181, 330, 361, 535, 646
BstDEI CTNAG 3 cut(s) 26, 32, 627
BstDSI CCRYGG 3 cut(s) 206, 243, 566
BstF5I GGATG 3 cut(s) 42, 170, 242
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 2 cut(s) 438, 596
BstMBI GATC 1 cut(s) 130
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 4 cut(s) 68, 176, 284, 338
BstNI CCWGG 2 cut(s) 14, 114
BstNSI RCATGY 5 cut(s) 68, 549, 609, 648, 699
BstPAI GACNNNNGTC 1 cut(s) 387
BstSCI CCNGG 2 cut(s) 12, 112
BstSLI GKGCMC 2 cut(s) 64, 229
BstV1I GCAGC 2 cut(s) 80, 486
BstV2I GAAGAC 1 cut(s) 14
BstZI CGGCCG 1 cut(s) 214
BsuRI GGCC 3 cut(s) 112, 216, 227
BtgI CCRYGG 3 cut(s) 206, 243, 566
BtsCI GGATG 3 cut(s) 42, 170, 242
Cac8I GCNNGC 5 cut(s) 181, 330, 361, 535, 646
CfoI GCGC 1 cut(s) 545
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 4 cut(s) 225, 226, 513, 707
CseI GACGC 1 cut(s) 257
Csp6I GTAC 2 cut(s) 438, 687
CviAII CATG 8 cut(s) 65, 207, 415, 546, 606, 645, 696, 735
CviQI GTAC 2 cut(s) 438, 687
DdeI CTNAG 3 cut(s) 26, 32, 627
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EaeI YGGCCR 2 cut(s) 110, 214
EagI CGGCCG 1 cut(s) 214
EciI GGCGGA 3 cut(s) 315, 378, 573
EclXI CGGCCG 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 229
Eco47I GGWCC 2 cut(s) 513, 707
Eco52I CGGCCG 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 169
Eco72I CACGTG 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 12, 112
EcoT14I CCWWGG 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 8 cut(s) 68, 210, 418, 549, 609, 648, 699, 738
FatI CATG 8 cut(s) 64, 206, 414, 545, 605, 644, 695, 734
Fnu4HI GCNGC 3 cut(s) 69, 217, 500
FokI GGATG 3 cut(s) 29, 157, 249
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 3 cut(s) 69, 217, 500
FspBI CTAG 2 cut(s) 180, 191
GlaI GCGC 1 cut(s) 544
GluI GCNGC 3 cut(s) 69, 217, 500
HaeIII GGCC 3 cut(s) 112, 216, 227
HapII CCGG 4 cut(s) 200, 315, 441, 599
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 545
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 8 cut(s) 68, 210, 418, 549, 609, 648, 699, 738
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 1 cut(s) 424
HpaII CCGG 4 cut(s) 200, 315, 441, 599
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 3 cut(s) 62, 478, 707
Hpy188I TCNGA 4 cut(s) 56, 130, 492, 517
Hpy188III TCNNGA 2 cut(s) 255, 599
Hpy8I GTNNAC 3 cut(s) 62, 478, 707
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 4 cut(s) 106, 284, 311, 570
HpyCH4IV ACGT 3 cut(s) 302, 384, 474
HpyCH4V TGCA 7 cut(s) 62, 68, 306, 450, 502, 579, 699
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 176, 284, 338
HpyF3I CTNAG 3 cut(s) 26, 32, 627
HpySE526I ACGT 3 cut(s) 302, 384, 474
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 8 cut(s) 68, 210, 418, 549, 609, 648, 699, 738
HspAI GCGC 1 cut(s) 543
Kpn2I TCCGGA 1 cut(s) 598
KpnI GGTACC 1 cut(s) 441
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 245, 522
Lsp1109I GCAGC 2 cut(s) 80, 486
LweI GCATC 2 cut(s) 179, 227
MaeI CTAG 2 cut(s) 180, 191
MaeII ACGT 3 cut(s) 302, 384, 474
MaeIII GTNAC 2 cut(s) 298, 421
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 19
MhlI GDGCHC 2 cut(s) 64, 229
MlsI TGGCCA 1 cut(s) 112
MluCI AATT 4 cut(s) 143, 344, 554, 619
MluNI TGGCCA 1 cut(s) 112
MlyI GAGTC 1 cut(s) 418
MnlI CCTC 9 cut(s) 35, 41, 50, 136, 150, 262, 298, 359, 597
Mox20I TGGCCA 1 cut(s) 112
MroI TCCGGA 1 cut(s) 598
MscI TGGCCA 1 cut(s) 112
MseI TTAA 2 cut(s) 38, 552
MslI CAYNNNNRTG 3 cut(s) 200, 419, 694
Msp20I TGGCCA 1 cut(s) 112
MspI CCGG 4 cut(s) 200, 315, 441, 599
MspR9I CCNGG 2 cut(s) 14, 114
MvaI CCWGG 2 cut(s) 14, 114
MwoI GCNNNNNNNGC 4 cut(s) 68, 176, 284, 338
NcoI CCATGG 1 cut(s) 206
NdeII GATC 1 cut(s) 130
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 8 cut(s) 68, 210, 418, 549, 609, 648, 699, 738
NlaIV GGNNCC 7 cut(s) 118, 204, 227, 313, 319, 439, 514
NmuCI GTSAC 2 cut(s) 298, 421
NspI RCATGY 5 cut(s) 68, 549, 609, 648, 699
OliI CACNNNNGTG 1 cut(s) 200
PaeI GCATGC 1 cut(s) 648
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 3 cut(s) 70, 218, 501
PleI GAGTC 1 cut(s) 418
PmaCI CACGTG 1 cut(s) 303
PmlI CACGTG 1 cut(s) 303
PpsI GAGTC 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 303
PshAI GACNNNNGTC 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 12, 112
PspCI CACGTG 1 cut(s) 303
PspGI CCWGG 2 cut(s) 12, 112
PspN4I GGNNCC 7 cut(s) 118, 204, 227, 313, 319, 439, 514
PspOMI GGGCCC 1 cut(s) 225
PspPI GGNCC 4 cut(s) 225, 226, 513, 707
PsyI GACNNNGTC 1 cut(s) 76
RsaI GTAC 2 cut(s) 439, 688
RsaNI GTAC 2 cut(s) 438, 687
RseI CAYNNNNRTG 3 cut(s) 200, 419, 694
SaqAI TTAA 2 cut(s) 38, 552
SatI GCNGC 3 cut(s) 69, 217, 500
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 4 cut(s) 225, 226, 513, 707
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 14, 114
SduI GDGCHC 2 cut(s) 64, 229
SfaNI GCATC 2 cut(s) 179, 227
SinI GGWCC 2 cut(s) 513, 707
SmiMI CAYNNNNRTG 3 cut(s) 200, 419, 694
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
SphI GCATGC 1 cut(s) 648
Sse9I AATT 4 cut(s) 143, 344, 554, 619
SsiI CCGC 7 cut(s) 217, 276, 326, 341, 363, 435, 584
SspI AATATT 1 cut(s) 352
SspMI CTAG 2 cut(s) 180, 191
StyD4I CCNGG 2 cut(s) 12, 112
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 4 cut(s) 106, 284, 311, 570
TaiI ACGT 3 cut(s) 305, 387, 477
TaqI TCGA 1 cut(s) 162
TasI AATT 4 cut(s) 143, 344, 554, 619
TauI GCSGC 1 cut(s) 219
Tru1I TTAA 2 cut(s) 38, 552
Tru9I TTAA 2 cut(s) 38, 552
TseFI GTSAC 2 cut(s) 298, 421
TseI GCWGC 2 cut(s) 68, 499
Tsp45I GTSAC 2 cut(s) 298, 421
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 260
Tth111I GACNNNGTC 1 cut(s) 76
VneI GTGCAC 1 cut(s) 60
VpaK11BI GGWCC 2 cut(s) 513, 707
XapI RAATTY 2 cut(s) 344, 554
XceI RCATGY 5 cut(s) 68, 549, 609, 648, 699
XspI CTAG 2 cut(s) 180, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.