Prupe.3G144000_v2.0.a1

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000594
Physical Location & Seq
Forward (+)
15626324 .. 15627537
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G144000.1

Sequence Viewer

Length: 741 bp
ATGATGAAGAGCCAAGCAGCTCTCCTCGGCCTCACCACCTTGGCCATCCTCTTCTTCTCAGGTGCACATGCAGCTAAAATCACTTTCACAAACAAATGTTCCTACACTGTCTGGCCAGGAACCCTAACCGGTGACCAAAAACCTCAATTATCACTCACCGGGTTCGAGTTAGCAACCGGAATTAGCAACTCTGTGGACGCTCCGTCCCCGTGGTCCGGTCGCTTCTTTGGCCGAACCAGGTGCTCCACGGACGCGTCAGGAAAGTTCACTTGTGCCACAGCAGATTGTGGCTCTGGCCAAGTCTCATGCAACGGTAACGGCGCAGTTCCGCCAGCTACATTAGTAGAAATCACTATTGCTGAGAACGGGGGTCAAGATTTCTACGATGTTAGTCTTGTTGACGGCTTCAACTTGCCCATGTCCGTGGCTCCACAAGGCGGCACCGGAGAGTGTAAGGCCTCAACTTGCCCTGCCGATATTAACAAAGTGTGCCCGGCTGAGTTACAAGTGAAGGGATCTGATGGAAGCGTAATTGCGTGCAAGAGCGCTTGCTTAGCATTAAACCAGCCACAATACTGTTGCACTCCCCCTAACGACAAGCCGGAGACATGCCCTCCCACTGACTACTCTAAGCTCTTCAAGACCCAGTGCCCTCAAGCTTATAGCTATGCTTATGATGACAAGAGCAGCACCTTCACATGCAGTGGTAGACCTGACTACCTCATCACATTCTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

247

Amino Acids

25.84

Weight (kDa)

5.13

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 440
AccI GTMKAC 1 cut(s) 709
AccII CGCG 1 cut(s) 254
AciI CCGC 2 cut(s) 329, 438
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 4 cut(s) 42, 113, 229, 295
AfeI AGCGCT 1 cut(s) 547
AfiI CCNNNNNNNGG 2 cut(s) 215, 437
AflIII ACRYGT 1 cut(s) 252
AgeI ACCGGT 1 cut(s) 128
AgsI TTSAA 2 cut(s) 409, 640
AhdI GACNNNNNGTC 1 cut(s) 202
AjnI CCWGG 2 cut(s) 115, 236
AluBI AGCT 6 cut(s) 20, 74, 335, 634, 659, 666
AluI AGCT 6 cut(s) 20, 74, 335, 634, 659, 666
Alw21I GWGCWC 2 cut(s) 67, 245
Alw26I GTCTC 2 cut(s) 307, 599
Alw44I GTGCAC 1 cut(s) 63
AlwI GGATC 1 cut(s) 523
Aor51HI AGCGCT 1 cut(s) 547
AoxI GGCC 6 cut(s) 28, 42, 113, 229, 295, 456
ApaLI GTGCAC 1 cut(s) 63
ApeKI GCWGC 3 cut(s) 17, 71, 687
AsiGI ACCGGT 1 cut(s) 128
AspLEI GCGC 2 cut(s) 323, 548
AspS9I GGNCC 1 cut(s) 213
AsuC2I CCSGG 2 cut(s) 160, 494
AsuHPI GGTGA 3 cut(s) 25, 143, 148
AvaII GGWCC 1 cut(s) 213
BaeGI GKGCMC 3 cut(s) 67, 494, 653
BalI TGGCCA 3 cut(s) 44, 115, 297
BanI GGYRCC 1 cut(s) 440
Bbv12I GWGCWC 2 cut(s) 67, 245
BbvI GCAGC 3 cut(s) 29, 83, 699
BccI CCATC 2 cut(s) 53, 515
BceAI ACGGC 2 cut(s) 334, 418
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 2 cut(s) 117, 238
BcnI CCSGG 2 cut(s) 160, 494
BcoDI GTCTC 2 cut(s) 307, 599
BfoI RGCGCY 1 cut(s) 549
BisI GCNGC 4 cut(s) 18, 72, 439, 688
BlpI GCTNAGC 1 cut(s) 553
BlsI GCNGC 4 cut(s) 19, 73, 440, 689
Bme1390I CCNGG 4 cut(s) 117, 160, 238, 494
Bme18I GGWCC 1 cut(s) 213
BmeRI GACNNNNNGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 3 cut(s) 121, 429, 442
BmrFI CCNGG 4 cut(s) 117, 160, 238, 494
BmrI ACTGGG 1 cut(s) 640
BmuI ACTGGG 1 cut(s) 640
Bpu1102I GCTNAGC 1 cut(s) 553
BpuEI CTTGAG 1 cut(s) 639
BpuMI CCSGG 2 cut(s) 160, 494
BsaJI CCNNGG 5 cut(s) 25, 39, 209, 246, 423
BsaWI WCCGGW 4 cut(s) 128, 176, 215, 443
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 437
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 646
BseBI CCWGG 2 cut(s) 117, 238
BseDI CCNNGG 5 cut(s) 25, 39, 209, 246, 423
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 215, 437
BseMII CTCAG 3 cut(s) 72, 351, 489
BseNI ACTGG 1 cut(s) 646
BseRI GAGGAG 1 cut(s) 14
BseSI GKGCMC 3 cut(s) 67, 494, 653
BseXI GCAGC 3 cut(s) 29, 83, 699
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 6 cut(s) 30, 44, 115, 231, 297, 458
BshNI GGYRCC 1 cut(s) 440
BshTI ACCGGT 1 cut(s) 128
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 67, 245
BsiSI CCGG 7 cut(s) 129, 159, 177, 216, 444, 494, 602
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 215, 437
BsmAI GTCTC 2 cut(s) 307, 599
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 6 cut(s) 30, 44, 115, 231, 297, 458
Bsp1286I GDGCHC 4 cut(s) 67, 245, 494, 653
Bsp143I GATC 1 cut(s) 515
Bsp1720I GCTNAGC 1 cut(s) 553
BspACI CCGC 2 cut(s) 329, 438
BspANI GGCC 6 cut(s) 30, 44, 115, 231, 297, 458
BspCNI CTCAG 3 cut(s) 71, 352, 490
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 3 cut(s) 121, 429, 442
BspPI GGATC 1 cut(s) 523
BspQI GCTCTTC 2 cut(s) 2, 641
BspT107I GGYRCC 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 646
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 5 cut(s) 25, 39, 209, 246, 423
BssMI GATC 1 cut(s) 515
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 117, 238
Bst4CI ACNGT 3 cut(s) 109, 314, 578
Bst6I CTCTTC 3 cut(s) 2, 56, 641
BstC8I GCNNGC 3 cut(s) 333, 538, 550
BstDEI CTNAG 5 cut(s) 58, 360, 498, 553, 630
BstDSI CCRYGG 3 cut(s) 209, 246, 423
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 1 cut(s) 254
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 2 cut(s) 323, 548
BstKTI GATC 1 cut(s) 518
BstMAI GTCTC 2 cut(s) 307, 599
BstMBI GATC 1 cut(s) 515
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 71, 228, 554
BstNI CCWGG 2 cut(s) 117, 238
BstNSI RCATGY 3 cut(s) 71, 612, 702
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 4 cut(s) 115, 158, 236, 492
BstSLI GKGCMC 3 cut(s) 67, 494, 653
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 3 cut(s) 29, 83, 699
BstX2I RGATCY 1 cut(s) 515
BstXI CCANNNNNNTGG 1 cut(s) 424
BstYI RGATCY 1 cut(s) 515
BsuRI GGCC 6 cut(s) 30, 44, 115, 231, 297, 458
BtgI CCRYGG 3 cut(s) 209, 246, 423
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 4 cut(s) 105, 618, 653, 709
Cac8I GCNNGC 3 cut(s) 333, 538, 550
CfoI GCGC 2 cut(s) 323, 548
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 213
CseI GACGC 3 cut(s) 206, 243, 260
CsiI ACCWGGT 1 cut(s) 236
CspAI ACCGGT 1 cut(s) 128
CviAII CATG 5 cut(s) 68, 306, 418, 609, 699
DdeI CTNAG 5 cut(s) 58, 360, 498, 553, 630
DpnI GATC 1 cut(s) 517
DpnII GATC 1 cut(s) 515
DriI GACNNNNNGTC 1 cut(s) 202
EaeI YGGCCR 4 cut(s) 42, 113, 229, 295
Eam1104I CTCTTC 3 cut(s) 2, 56, 641
Eam1105I GACNNNNNGTC 1 cut(s) 202
EarI CTCTTC 3 cut(s) 2, 56, 641
EciI GGCGGA 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 213
Eco47III AGCGCT 1 cut(s) 547
Eco91I GGTNACC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 115, 236
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 5 cut(s) 71, 309, 421, 612, 702
FaiI YATR 9 cut(s) 69, 307, 419, 610, 663, 669, 675, 700, 739
FaqI GGGAC 1 cut(s) 190
FatI CATG 5 cut(s) 67, 305, 417, 608, 698
FblI GTMKAC 1 cut(s) 709
Fnu4HI GCNGC 4 cut(s) 18, 72, 439, 688
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 4 cut(s) 18, 72, 439, 688
GlaI GCGC 2 cut(s) 322, 547
GluI GCNGC 4 cut(s) 18, 72, 439, 688
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 6 cut(s) 30, 44, 115, 231, 297, 458
HapII CCGG 7 cut(s) 129, 159, 177, 216, 444, 494, 602
HgaI GACGC 3 cut(s) 206, 243, 260
HhaI GCGC 2 cut(s) 323, 548
Hin1II CATG 5 cut(s) 71, 309, 421, 612, 702
Hin6I GCGC 2 cut(s) 321, 546
HinP1I GCGC 2 cut(s) 321, 546
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 657
HpaII CCGG 7 cut(s) 129, 159, 177, 216, 444, 494, 602
HphI GGTGA 3 cut(s) 25, 143, 148
Hpy166II GTNNAC 5 cut(s) 65, 196, 267, 400, 710
Hpy188I TCNGA 1 cut(s) 520
Hpy188III TCNNGA 3 cut(s) 258, 374, 640
Hpy8I GTNNAC 5 cut(s) 65, 196, 267, 400, 710
HpyAV CCTTC 2 cut(s) 505, 703
HpyCH4III ACNGT 3 cut(s) 109, 314, 578
HpyCH4V TGCA 6 cut(s) 65, 71, 309, 540, 582, 702
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 228, 554
HpyF3I CTNAG 5 cut(s) 58, 360, 498, 553, 630
Hsp92II CATG 5 cut(s) 71, 309, 421, 612, 702
HspAI GCGC 2 cut(s) 321, 546
Kzo9I GATC 1 cut(s) 515
LguI GCTCTTC 2 cut(s) 2, 641
LmnI GCTCC 3 cut(s) 205, 248, 433
Lsp1109I GCAGC 3 cut(s) 29, 83, 699
MabI ACCWGGT 1 cut(s) 236
MaeIII GTNAC 3 cut(s) 131, 314, 501
MalI GATC 1 cut(s) 517
MboI GATC 1 cut(s) 515
MboII GAAGA 4 cut(s) 19, 43, 46, 628
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 4 cut(s) 67, 245, 494, 653
MlsI TGGCCA 3 cut(s) 44, 115, 297
MluCI AATT 3 cut(s) 146, 180, 531
MluI ACGCGT 1 cut(s) 252
MluNI TGGCCA 3 cut(s) 44, 115, 297
MnlI CCTC 8 cut(s) 35, 41, 59, 153, 469, 624, 663, 731
Mox20I TGGCCA 3 cut(s) 44, 115, 297
MscI TGGCCA 3 cut(s) 44, 115, 297
MseI TTAA 2 cut(s) 480, 560
MslI CAYNNNNRTG 1 cut(s) 422
Msp20I TGGCCA 3 cut(s) 44, 115, 297
MspI CCGG 7 cut(s) 129, 159, 177, 216, 444, 494, 602
MspR9I CCNGG 4 cut(s) 117, 160, 238, 494
MvaI CCWGG 2 cut(s) 117, 238
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 71, 228, 554
NciI CCSGG 2 cut(s) 160, 494
NdeII GATC 1 cut(s) 515
NlaIII CATG 5 cut(s) 71, 309, 421, 612, 702
NlaIV GGNNCC 3 cut(s) 121, 429, 442
NmeAIII GCCGAG 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 3 cut(s) 71, 612, 702
PceI AGGCCT 1 cut(s) 458
PciSI GCTCTTC 2 cut(s) 2, 641
PinAI ACCGGT 1 cut(s) 128
PkrI GCNGC 4 cut(s) 19, 73, 440, 689
Psp6I CCWGG 2 cut(s) 115, 236
PspEI GGTNACC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 115, 236
PspN4I GGNNCC 3 cut(s) 121, 429, 442
PspPI GGNCC 1 cut(s) 213
PsuI RGATCY 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 422
SapI GCTCTTC 2 cut(s) 2, 641
SaqAI TTAA 2 cut(s) 480, 560
SatI GCNGC 4 cut(s) 18, 72, 439, 688
Sau3AI GATC 1 cut(s) 515
Sau96I GGNCC 1 cut(s) 213
ScrFI CCNGG 4 cut(s) 117, 160, 238, 494
SduI GDGCHC 4 cut(s) 67, 245, 494, 653
SexAI ACCWGGT 1 cut(s) 236
SinI GGWCC 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 654
SmoI CTYRAG 1 cut(s) 654
Sse9I AATT 3 cut(s) 146, 180, 531
SseBI AGGCCT 1 cut(s) 458
SsiI CCGC 2 cut(s) 329, 438
StuI AGGCCT 1 cut(s) 458
StyD4I CCNGG 4 cut(s) 115, 158, 236, 492
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 3 cut(s) 109, 314, 578
TaqI TCGA 1 cut(s) 165
TasI AATT 3 cut(s) 146, 180, 531
TauI GCSGC 1 cut(s) 441
Tru1I TTAA 2 cut(s) 480, 560
Tru9I TTAA 2 cut(s) 480, 560
TscAI CASTG 4 cut(s) 112, 625, 653, 709
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 3 cut(s) 17, 71, 687
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 3 cut(s) 192, 263, 412
TspRI CASTG 4 cut(s) 112, 625, 653, 709
VneI GTGCAC 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 213
XceI RCATGY 3 cut(s) 71, 612, 702
XmiI GTMKAC 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.