RchiOBHm_Chr3g0484171

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000594
Physical Location & Seq
Reverse (-)
30505011 .. 30505761
751 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44888

Sequence Viewer

Length: 483 bp
ATGATGAAAATCCAAGTGCTTCTCTACCTCACTTTCGCCTTCCTTTTCTTTCCAGGCGCACATCCGGCAACAATTTCTTTCACAAACAAGTGCACCTTCAAGGTCTGGCCAGCAACCCTAACTTCTGATAACAAACCTCAGTTACCATTGACGGGGTTCGAGTTAGCACCCCAAGCTAGCAATTCCATAGACACTCCGGTTCCATGGAATGGCCGCTTCTGGGGCCGTACCAACTGCTTCACGGACAATTCAGGAATGTTCACTTGTGACAAACCAGGGGATTGCGCATCCGGTCAGGTCTCATGCAACGGAAAAGGAGGAATTCCGCCAGCCACTTTGGTGGAAATTAATATCCCAGCAGGTGGGGGTCAAGATTTCTACGATGTTAGTCTTGTTGACGGCTTCAACTTGCCCATCTCCGTAACCCTCAAGGCGGTCACGCTCCCGGGGACTGTCGGAGCTCTAGCTGCAGCGCCAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

160

Amino Acids

16.91

Weight (kDa)

5.62

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 146 1.4e-36 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
Acc16I TGCGCA 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 350
AccB7I CCANNNNNTGG 2 cut(s) 209, 362
AciI CCGC 3 cut(s) 214, 326, 434
AcoI YGGCCR 2 cut(s) 107, 211
AcsI RAATTY 1 cut(s) 321
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 5 cut(s) 152, 209, 220, 362, 433
AgsI TTSAA 2 cut(s) 100, 406
AjnI CCWGG 2 cut(s) 52, 274
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 3 cut(s) 176, 461, 467
AluI AGCT 3 cut(s) 176, 461, 467
Alw21I GWGCWC 2 cut(s) 95, 463
Alw26I GTCTC 1 cut(s) 304
Alw44I GTGCAC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 3 cut(s) 107, 211, 223
ApaLI GTGCAC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 467, 470
ApoI RAATTY 1 cut(s) 321
AseI ATTAAT 1 cut(s) 348
AspLEI GCGC 3 cut(s) 59, 287, 475
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 2 cut(s) 446, 447
AsuNHI GCTAGC 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 445
BaeGI GKGCMC 1 cut(s) 95
BalI TGGCCA 1 cut(s) 109
BanII GRGCYC 1 cut(s) 463
Bbv12I GWGCWC 2 cut(s) 95, 463
BbvI GCAGC 1 cut(s) 454
BccI CCATC 1 cut(s) 422
BceAI ACGGC 2 cut(s) 210, 415
BciT130I CCWGG 2 cut(s) 54, 276
BcnI CCSGG 2 cut(s) 446, 447
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 2 cut(s) 177, 464
BfmI CTRYAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 3 cut(s) 214, 468, 471
BlsI GCNGC 3 cut(s) 215, 469, 472
Bme1390I CCNGG 4 cut(s) 54, 276, 446, 447
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 201, 224
BmrFI CCNGG 4 cut(s) 54, 276, 446, 447
BmsI GCATC 1 cut(s) 296
BmtI GCTAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 2 cut(s) 446, 447
BsaBI GATNNNNATC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 4 cut(s) 203, 275, 445, 446
BsaWI WCCGGW 2 cut(s) 196, 290
Bsc4I CCNNNNNNNGG 5 cut(s) 152, 209, 220, 362, 433
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 54, 276
BseDI CCNNGG 4 cut(s) 203, 275, 445, 446
BseGI GGATG 2 cut(s) 61, 287
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 5 cut(s) 152, 209, 220, 362, 433
BseMII CTCAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 95
BseXI GCAGC 1 cut(s) 454
BseYI CCCAGC 1 cut(s) 355
BshFI GGCC 3 cut(s) 109, 213, 225
BsiHKAI GWGCWC 2 cut(s) 95, 463
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 4 cut(s) 65, 197, 291, 446
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 5 cut(s) 152, 209, 220, 362, 433
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 3 cut(s) 109, 213, 225
Bso31I GGTCTC 1 cut(s) 304
BsoBI CYCGRG 1 cut(s) 445
Bsp1286I GDGCHC 2 cut(s) 95, 463
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 3 cut(s) 214, 326, 434
BspANI GGCC 3 cut(s) 109, 213, 225
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 201, 224
BspMAI CTGCAG 1 cut(s) 472
BspMI ACCTGC 1 cut(s) 350
BspOI GCTAGC 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 304
BssECI CCNNGG 4 cut(s) 203, 275, 445, 446
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 2 cut(s) 54, 276
Bst4CI ACNGT 1 cut(s) 454
BstC8I GCNNGC 3 cut(s) 111, 178, 330
BstDEI CTNAG 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 61, 287
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 3 cut(s) 59, 287, 475
BstMAI GTCTC 1 cut(s) 304
BstMWI GCNNNNNNNGC 4 cut(s) 65, 173, 222, 467
BstNI CCWGG 2 cut(s) 54, 276
BstSCI CCNGG 4 cut(s) 52, 274, 444, 445
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 454
BstXI CCANNNNNNTGG 1 cut(s) 340
BsuRI GGCC 3 cut(s) 109, 213, 225
BtgI CCRYGG 1 cut(s) 203
BtsCI GGATG 2 cut(s) 61, 287
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 3 cut(s) 111, 178, 330
CfoI GCGC 3 cut(s) 59, 287, 475
Cfr13I GGNCC 1 cut(s) 223
Cfr9I CCCGGG 1 cut(s) 445
Csp6I GTAC 1 cut(s) 228
CviAII CATG 2 cut(s) 204, 303
CviJI RGCY 8 cut(s) 109, 176, 213, 225, 332, 402, 461, 467
CviKI_1 RGCY 8 cut(s) 109, 176, 213, 225, 332, 402, 461, 467
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 138
EaeI YGGCCR 2 cut(s) 107, 211
EciI GGCGGA 1 cut(s) 315
Ecl136II GAGCTC 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 463
Eco31I GGTCTC 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 461
Eco88I CYCGRG 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 321
EcoRII CCWGG 2 cut(s) 52, 274
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 2 cut(s) 207, 306
FaiI YATR 3 cut(s) 188, 205, 304
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 463
FatI CATG 2 cut(s) 203, 302
Fnu4HI GCNGC 3 cut(s) 214, 468, 471
FokI GGATG 2 cut(s) 48, 274
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 3 cut(s) 214, 468, 471
FspBI CTAG 2 cut(s) 177, 464
FspI TGCGCA 1 cut(s) 286
GlaI GCGC 3 cut(s) 58, 286, 474
GluI GCNGC 3 cut(s) 214, 468, 471
GsaI CCCAGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 3 cut(s) 109, 213, 225
HapII CCGG 4 cut(s) 65, 197, 291, 446
HhaI GCGC 3 cut(s) 59, 287, 475
Hin1II CATG 2 cut(s) 207, 306
Hin6I GCGC 3 cut(s) 57, 285, 473
HinP1I GCGC 3 cut(s) 57, 285, 473
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HpaII CCGG 4 cut(s) 65, 197, 291, 446
Hpy166II GTNNAC 3 cut(s) 93, 261, 397
Hpy188I TCNGA 2 cut(s) 127, 458
Hpy188III TCNNGA 2 cut(s) 252, 371
Hpy8I GTNNAC 3 cut(s) 93, 261, 397
HpyAV CCTTC 2 cut(s) 49, 106
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 3 cut(s) 93, 306, 470
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 173, 222, 467
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 479
Hsp92II CATG 2 cut(s) 207, 306
HspAI GCGC 3 cut(s) 57, 285, 473
LmnI GCTCC 2 cut(s) 447, 458
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 1 cut(s) 296
MaeI CTAG 2 cut(s) 177, 464
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 4 cut(s) 141, 266, 421, 436
MhlI GDGCHC 2 cut(s) 95, 463
MlsI TGGCCA 1 cut(s) 109
MluCI AATT 5 cut(s) 72, 181, 247, 321, 345
MluNI TGGCCA 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 4 cut(s) 38, 147, 311, 437
Mox20I TGGCCA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 109
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 109
MspI CCGG 4 cut(s) 65, 197, 291, 446
MspR9I CCNGG 4 cut(s) 54, 276, 446, 447
MvaI CCWGG 2 cut(s) 54, 276
MwoI GCNNNNNNNGC 4 cut(s) 65, 173, 222, 467
NciI CCSGG 2 cut(s) 446, 447
NcoI CCATGG 1 cut(s) 203
NheI GCTAGC 1 cut(s) 176
NlaIII CATG 2 cut(s) 207, 306
NlaIV GGNNCC 2 cut(s) 201, 224
NmuCI GTSAC 2 cut(s) 266, 436
NsbI TGCGCA 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 338
PaqCI CACCTGC 1 cut(s) 350
PflMI CCANNNNNTGG 2 cut(s) 209, 362
PkrI GCNGC 3 cut(s) 215, 469, 472
PshBI ATTAAT 1 cut(s) 348
Psp124BI GAGCTC 1 cut(s) 463
Psp6I CCWGG 2 cut(s) 52, 274
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 2 cut(s) 52, 274
PspN4I GGNNCC 2 cut(s) 201, 224
PspPI GGNCC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 472
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 338
SacI GAGCTC 1 cut(s) 463
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 3 cut(s) 214, 468, 471
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 4 cut(s) 54, 276, 446, 447
SduI GDGCHC 2 cut(s) 95, 463
SfaNI GCATC 1 cut(s) 296
SfcI CTRYAG 1 cut(s) 468
SmaI CCCGGG 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 5 cut(s) 72, 181, 247, 321, 345
SsiI CCGC 3 cut(s) 214, 326, 434
SspMI CTAG 2 cut(s) 177, 464
SstI GAGCTC 1 cut(s) 463
StyD4I CCNGG 4 cut(s) 52, 274, 444, 445
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 1 cut(s) 482
TaqI TCGA 1 cut(s) 159
TasI AATT 5 cut(s) 72, 181, 247, 321, 345
TauI GCSGC 1 cut(s) 216
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseFI GTSAC 2 cut(s) 266, 436
TseI GCWGC 2 cut(s) 467, 470
Tsp45I GTSAC 2 cut(s) 266, 436
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 3 cut(s) 257, 324, 409
TspMI CCCGGG 1 cut(s) 445
Van91I CCANNNNNTGG 2 cut(s) 209, 362
VneI GTGCAC 1 cut(s) 91
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 1 cut(s) 321
XmaI CCCGGG 1 cut(s) 445
XspI CTAG 2 cut(s) 177, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.